Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Forward (+)

32623998 .. 32624750

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGCCGATCCAGAAAACTGAGTCGCTGAATTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATGTTCTCGACCACGCCATCACCCTCGCCGCCTCCGATTTTCCGGAGGAGTTCAGTCGCCAAAGGAGTCGAATTCTCGGTTCGATTCAGGGTTTGGGCGGCGGTGATGATCGGCGCTCCGATCTAGGGTTTGGTGGCTCATCTGAAACTGGGTCGGAACAAAAGGCTGAGCCTTCAAAGCCATCGCTCAAAGTACGCATAAAGATCGTGAAGCGAAACGTTGATGGTACCTTGATCAAACCCAGTTCAGATGAAGCTAAACCGATCAAGCCCTCTTCAGATGAGAATAAGTCGATCAAGCCGGAAACGTGTGTTGATAAAGTGGCACTTGATCGAGCGAAAATGATCAAGCCCCCACCCTGTGTTGGTGAAGCTAAATCGATCAAGCCGAAGCCGTGTTTGGATGAAGTGGCAATTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGTTTCATGATCGATATGAAGAAATTGAGAACAGTAAGAAGCAGAGGAGGATACAAGTCTTGAATTATCTTCCCAACCAAGACTTCAAGCTTGGATGCCCTACCAGTACTAAACCACAGGGGAAGAAACTTGGAAACCATTGTCTACAGTCCTCGGCGAGAAGGCGGGTGGCAAATAAACTGGGTTTTCAGAGTTTTCAAAGTAATAGGATAGTCAGTGCTACCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

250

Amino Acids

27.8

Weight (kDa)

9.62

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	4, 305
AccI	GTMKAC	1 cut(s)	667
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	4 cut(s)	108, 177, 180, 688
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	339, 491
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	3 cut(s)	273, 307, 631
AfiI	CCNNNNNNNGG	2 cut(s)	204, 443
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	255, 586, 610, 722
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 493, 590, 622
AluBI	AGCT	4 cut(s)	335, 452, 505, 613
AluI	AGCT	4 cut(s)	335, 452, 505, 613
AlwI	GGATC	1 cut(s)	4
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	150
Asp718I	GGTACC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	7, 195
AsuHPI	GGTGA	3 cut(s)	91, 194, 458
BanI	GGYRCC	2 cut(s)	4, 305
BccI	CCATC	3 cut(s)	104, 268, 296
BceAI	ACGGC	1 cut(s)	457
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	2 cut(s)	312, 423
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	668
BfoI	RGCGCY	2 cut(s)	8, 196
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	108, 178
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	2 cut(s)	109, 179
BmcAI	AGTACT	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	6, 307
BmrI	ACTGGG	3 cut(s)	237, 315, 713
BmsI	GCATC	1 cut(s)	608
BmuI	ACTGGG	3 cut(s)	237, 315, 713
BpmI	CTGGAG	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	246
Bsa29I	ATCGAT	2 cut(s)	458, 535
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 443
Bse1I	ACTGG	5 cut(s)	41, 232, 321, 627, 708
BseAI	TCCGGA	1 cut(s)	121
BseCI	ATCGAT	2 cut(s)	458, 535
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	2 cut(s)	487, 623
BseLI	CCNNNNNNNGG	2 cut(s)	204, 443
BseMII	CTCAG	2 cut(s)	12, 237
BseNI	ACTGG	5 cut(s)	41, 232, 321, 627, 708
BseRI	GAGGAG	2 cut(s)	140, 583
BshFI	GGCC	1 cut(s)	512
BshNI	GGYRCC	2 cut(s)	4, 305
BshVI	ATCGAT	2 cut(s)	458, 535
BsiSI	CCGG	2 cut(s)	122, 380
BslI	CCNNNNNNNGG	2 cut(s)	204, 443
BsnI	GGCC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	108, 177, 180, 688
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	2 cut(s)	13, 238
BspDI	ATCGAT	2 cut(s)	458, 535
BspEI	TCCGGA	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	6, 307
BspPI	GGATC	1 cut(s)	4
BspT107I	GGYRCC	2 cut(s)	4, 305
BsrI	ACTGG	5 cut(s)	41, 232, 321, 627, 708
BssECI	CCNNGG	1 cut(s)	675
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	557, 672
Bst6I	CTCTTC	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	21, 246
BstF5I	GGATG	2 cut(s)	487, 623
BstH2I	RGCGCY	2 cut(s)	8, 196
BstHHI	GCGC	2 cut(s)	7, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 497
BstSFI	CTRYAG	1 cut(s)	668
Bsu15I	ATCGAT	2 cut(s)	458, 535
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	512
BsuTUI	ATCGAT	2 cut(s)	458, 535
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	487, 623
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 745, 748
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	2 cut(s)	7, 195
ClaI	ATCGAT	2 cut(s)	458, 535
Csp6I	GTAC	3 cut(s)	272, 306, 630
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	3 cut(s)	272, 306, 630
DdeI	CTNAG	2 cut(s)	21, 246
DinI	GGCGCC	1 cut(s)	6
DraIII	CACNNNGTG	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	339, 491
EcoRI	GAATTC	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	533
FaiI	YATR	3 cut(s)	278, 531, 540
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	1 cut(s)	529
FauI	CCCGC	1 cut(s)	681
FbaI	TGATCA	2 cut(s)	312, 423
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	108, 178
FokI	GGATG	2 cut(s)	494, 630
Fsp4HI	GCNGC	2 cut(s)	108, 178
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	2 cut(s)	6, 194
GluI	GCNGC	2 cut(s)	108, 178
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	2 cut(s)	8, 196
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	2 cut(s)	122, 380
HhaI	GCGC	2 cut(s)	7, 195
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	2 cut(s)	5, 193
HinP1I	GCGC	2 cut(s)	5, 193
HindIII	AAGCTT	2 cut(s)	503, 611
HinfI	GANTC	3 cut(s)	23, 145, 163
HpaII	CCGG	2 cut(s)	122, 380
HphI	GGTGA	3 cut(s)	91, 194, 458
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	7 cut(s)	115, 199, 223, 235, 328, 358, 714
Hpy188III	TCNNGA	6 cut(s)	13, 86, 122, 286, 530, 583
Hpy8I	GTNNAC	1 cut(s)	668
HpyAV	CCTTC	2 cut(s)	261, 678
HpyCH4III	ACNGT	2 cut(s)	557, 672
HpyCH4IV	ACGT	2 cut(s)	297, 386
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 497
HpyF3I	CTNAG	2 cut(s)	21, 246
HpySE526I	ACGT	2 cut(s)	297, 386
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	2 cut(s)	5, 193
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	309
Ksp22I	TGATCA	2 cut(s)	312, 423
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	297, 386
MboII	GAAGA	4 cut(s)	345, 554, 584, 658
MfeI	CAATTG	1 cut(s)	492
MluCI	AATT	5 cut(s)	31, 150, 492, 546, 586
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	32, 154
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	33, 113, 118, 121, 361, 490, 561, 564, 685
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	2 cut(s)	122, 380
MunI	CAATTG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	256, 497
NarI	GGCGCC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	6, 307
NmeAIII	GCCGAG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 111, 464
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	109, 179
PleI	GAGTC	2 cut(s)	31, 153
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	31, 153
Psp1406I	AACGTT	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	6, 307
RsaI	GTAC	3 cut(s)	273, 307, 631
RsaNI	GTAC	3 cut(s)	272, 306, 630
SatI	GCNGC	2 cut(s)	108, 178
ScaI	AGTACT	1 cut(s)	631
SchI	GAGTC	2 cut(s)	32, 154
SetI	ASST	7 cut(s)	300, 311, 337, 389, 454, 507, 615
SfaNI	GCATC	1 cut(s)	608
SfcI	CTRYAG	1 cut(s)	668
SfoI	GGCGCC	1 cut(s)	6
Sse9I	AATT	5 cut(s)	31, 150, 492, 546, 586
SsiI	CCGC	4 cut(s)	108, 177, 180, 688
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	557, 672
TaiI	ACGT	2 cut(s)	300, 389
TaqI	TCGA	8 cut(s)	78, 87, 148, 161, 371, 412, 458, 535
TasI	AATT	5 cut(s)	31, 150, 492, 546, 586
TatI	WGTACW	1 cut(s)	629
TauI	GCSGC	2 cut(s)	110, 180
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	2 cut(s)	61, 745
TspDTI	ATGAA	4 cut(s)	345, 498, 518, 555
TspRI	CASTG	2 cut(s)	61, 745
XapI	RAATTY	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.