Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Reverse (-)

8917916 .. 8933876

Gene Structure 15961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATTCTGCAAAAGATAGGGAAAATATTGATCCTACGGACGCACCATTTTCTGCTTCTACTGGCGCTGAGCAGCAGCCTTCAAAACCATCCCTCAAAATATGCATAAAGATCGTGAAGCGAAATGTTGATGGTACCTTGATCAAACCCAGTTCAGATGACGCGAAACTGATCAAGCCCTGTTCTCATCTGATCGAGCTGAAACCATGTGTTGATAAAGTGGCAAAATTGATCAAGCCCCCACTCTGTGTTGGTGAAGCTAAATCGATTAACCCGAAGCCGTGTTTGGATGAAGCGGCAATTGAGGCAAAGCTTCAGGCCACGAAGAGAAGGTTTCATGATCGATATCAAGAAATTGAGAACAATAAGAGGCAAAGGAGGATACAAGTCTTGAATTATCTTCCCAAGCAAGACTTCAAGATTAGATGCCTTGCCACTACTAAACCCAAACTTGGGAAACCAGTACTAAAAATCACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.6

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	164
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	136, 465
AfiI	CCNNNNNNNGG	2 cut(s)	452, 453
AgsI	TTSAA	3 cut(s)	84, 394, 418
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 398, 430
AluBI	AGCT	3 cut(s)	199, 260, 313
AluI	AGCT	3 cut(s)	199, 260, 313
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	73, 76
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	85, 88
BccI	CCATC	2 cut(s)	97, 125
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	3 cut(s)	141, 171, 231
BfoI	RGCGCY	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	74, 77, 297
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	3 cut(s)	75, 78, 298
BmcAI	AGTACT	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	69
Bsa29I	ATCGAT	2 cut(s)	266, 343
BsaBI	GATNNNNATC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 453
Bse1I	ACTGG	3 cut(s)	67, 150, 461
Bse8I	GATNNNNATC	1 cut(s)	345
BseCI	ATCGAT	2 cut(s)	266, 343
BseGI	GGATG	2 cut(s)	89, 295
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	452, 453
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	67, 150, 461
BseXI	GCAGC	2 cut(s)	85, 88
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	134
BshVI	ATCGAT	2 cut(s)	266, 343
BslI	CCNNNNNNNGG	2 cut(s)	452, 453
BsnI	GGCC	1 cut(s)	320
Bsp143I	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	2 cut(s)	266, 343
BspFNI	CGCG	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	67, 150, 461
BssMI	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
Bst6I	CTCTTC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	89, 295
BstFNI	CGCG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	7 cut(s)	34, 114, 144, 174, 195, 234, 343
BstMBI	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	85, 88
Bsu15I	ATCGAT	2 cut(s)	266, 343
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	320
BsuTUI	ATCGAT	2 cut(s)	266, 343
BtsCI	GGATG	2 cut(s)	89, 295
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	68
ClaI	ATCGAT	2 cut(s)	266, 343
CseI	GACGC	2 cut(s)	50, 170
Csp6I	GTAC	2 cut(s)	135, 464
CviAII	CATG	2 cut(s)	207, 338
CviJI	RGCY	8 cut(s)	79, 178, 199, 238, 260, 280, 313, 320
CviKI_1	RGCY	8 cut(s)	79, 178, 199, 238, 260, 280, 313, 320
CviQI	GTAC	2 cut(s)	135, 464
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	7 cut(s)	33, 113, 143, 173, 194, 233, 342
DpnII	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	2 cut(s)	210, 341
FaiI	YATR	5 cut(s)	103, 107, 208, 339, 481
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	2 cut(s)	206, 337
FbaI	TGATCA	3 cut(s)	141, 171, 231
Fnu4HI	GCNGC	3 cut(s)	74, 77, 297
FokI	GGATG	2 cut(s)	76, 302
Fsp4HI	GCNGC	3 cut(s)	74, 77, 297
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	74, 77, 297
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	320
HgaI	GACGC	2 cut(s)	50, 170
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	210, 341
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	157, 192
Hpy188III	TCNNGA	5 cut(s)	115, 338, 350, 391, 418
HpyAV	CCTTC	2 cut(s)	90, 324
HpyCH4V	TGCA	2 cut(s)	11, 105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	210, 341
HspAI	GCGC	1 cut(s)	66
KpnI	GGTACC	1 cut(s)	138
Ksp22I	TGATCA	3 cut(s)	141, 171, 231
Kzo9I	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
LpnPI	CCDG	5 cut(s)	48, 163, 193, 302, 474
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	1 cut(s)	416
MalI	GATC	7 cut(s)	33, 113, 143, 173, 194, 233, 342
MboI	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
MboII	GAAGA	2 cut(s)	337, 392
MfeI	CAATTG	1 cut(s)	300
MluCI	AATT	4 cut(s)	227, 300, 354, 394
MnlI	CCTC	4 cut(s)	104, 298, 363, 372
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	1 cut(s)	270
MunI	CAATTG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
NlaIII	CATG	2 cut(s)	210, 341
NlaIV	GGNNCC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	107
PagI	TCATGA	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	75, 78, 298
PspN4I	GGNNCC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	136, 465
RsaNI	GTAC	2 cut(s)	135, 464
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	74, 77, 297
Sau3AI	GATC	7 cut(s)	31, 111, 141, 171, 192, 231, 340
ScaI	AGTACT	1 cut(s)	465
SetI	ASST	5 cut(s)	140, 201, 262, 315, 335
SfaNI	GCATC	1 cut(s)	416
Sse9I	AATT	4 cut(s)	227, 300, 354, 394
SsiI	CCGC	1 cut(s)	296
SspI	AATATT	1 cut(s)	28
TaqI	TCGA	3 cut(s)	195, 266, 343
TasI	AATT	4 cut(s)	227, 300, 354, 394
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	2 cut(s)	73, 76
TspDTI	ATGAA	2 cut(s)	306, 326
TspGWI	ACGGA	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.