vesicle-mediated transport
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43235 |
| fragaria_vesca | FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 |
| malus_domestica | MD04G1038000.v1.1 |
| prunus_persica | Prupe.1G187900_v2.0.a1 Prupe.1G187900_v2.0.a1 |
| pyrus_communis | pycom04g03090 |
| rosa_chinensis | RchiOBHm_Chr4g0407651 |
| rosa_laevigata | RLG00000002116 RLG00000008704 |
| rosa_multiflora | Rmu_sc0001743.1_g000005 Rmu_sc0001900.1_g000058 Rmu_sc0006439.1_g000002 Rmu_sc0011989.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00352250 |
| rosa_rugosa | Rorug02G0207700 Rorug04G0081100 |
| rosa_samantha | Rh4AG145700 Rh4BG143400 Rh4BG241800 Rh4CG152300 Rh4DG139900 |
| rosa_wichuraiana | Rw4G011830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 392 |
| AccB1I | GGYRCC | 1 cut(s) | 868 |
| AccBSI | CCGCTC | 2 cut(s) | 444, 723 |
| AccI | GTMKAC | 1 cut(s) | 309 |
| AccII | CGCG | 1 cut(s) | 374 |
| AclWI | GGATC | 1 cut(s) | 1176 |
| AcoI | YGGCCR | 1 cut(s) | 623 |
| AcsI | RAATTY | 1 cut(s) | 1178 |
| AcyI | GRCGYC | 2 cut(s) | 276, 869 |
| AfaI | GTAC | 2 cut(s) | 827, 1000 |
| AfeI | AGCGCT | 1 cut(s) | 1242 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 564, 621, 650, 1108 |
| AflIII | ACRYGT | 1 cut(s) | 1001 |
| AgsI | TTSAA | 2 cut(s) | 1162, 1264 |
| AjnI | CCWGG | 2 cut(s) | 863, 1022 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 152, 184, 619, 651 |
| AluBI | AGCT | 3 cut(s) | 610, 926, 986 |
| AluI | AGCT | 3 cut(s) | 610, 926, 986 |
| Alw21I | GWGCWC | 1 cut(s) | 672 |
| Alw26I | GTCTC | 3 cut(s) | 307, 337, 796 |
| AlwI | GGATC | 1 cut(s) | 1176 |
| Ama87I | CYCGRG | 2 cut(s) | 1106, 1140 |
| Aor51HI | AGCGCT | 1 cut(s) | 1242 |
| AoxI | GGCC | 3 cut(s) | 530, 623, 1020 |
| ApeKI | GCWGC | 5 cut(s) | 352, 983, 992, 1209, 1232 |
| ApoI | RAATTY | 1 cut(s) | 1178 |
| AspLEI | GCGC | 3 cut(s) | 389, 871, 1243 |
| AspS9I | GGNCC | 2 cut(s) | 286, 531 |
| AsuHPI | GGTGA | 5 cut(s) | 436, 547, 914, 1110, 1286 |
| AvaI | CYCGRG | 2 cut(s) | 1106, 1140 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| BalI | TGGCCA | 1 cut(s) | 625 |
| BanI | GGYRCC | 1 cut(s) | 868 |
| BbsI | GAAGAC | 1 cut(s) | 1107 |
| Bbv12I | GWGCWC | 1 cut(s) | 672 |
| BbvI | GCAGC | 5 cut(s) | 339, 979, 995, 1221, 1244 |
| BccI | CCATC | 2 cut(s) | 1120, 1126 |
| BceAI | ACGGC | 2 cut(s) | 263, 374 |
| BciT130I | CCWGG | 2 cut(s) | 865, 1024 |
| BcoDI | GTCTC | 3 cut(s) | 307, 337, 796 |
| BfaI | CTAG | 1 cut(s) | 1244 |
| BfmI | CTRYAG | 1 cut(s) | 981 |
| BfoI | RGCGCY | 2 cut(s) | 872, 1244 |
| BfuAI | ACCTGC | 1 cut(s) | 392 |
| BisI | GCNGC | 6 cut(s) | 340, 353, 984, 993, 1210, 1233 |
| BlsI | GCNGC | 6 cut(s) | 341, 354, 985, 994, 1211, 1234 |
| Bme1390I | CCNGG | 2 cut(s) | 865, 1024 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmeT110I | CYCGRG | 2 cut(s) | 1106, 1140 |
| BmgT120I | GGNCC | 2 cut(s) | 286, 531 |
| BmiI | GGNNCC | 2 cut(s) | 107, 870 |
| BmrFI | CCNGG | 2 cut(s) | 865, 1024 |
| BmsI | GCATC | 1 cut(s) | 898 |
| BoxI | GACNNNNGTC | 1 cut(s) | 299 |
| BpiI | GAAGAC | 1 cut(s) | 1107 |
| BpmI | CTGGAG | 1 cut(s) | 275 |
| BpuEI | CTTGAG | 1 cut(s) | 971 |
| BsaAI | YACGTR | 1 cut(s) | 998 |
| BsaHI | GRCGYC | 2 cut(s) | 276, 869 |
| BsaI | GGTCTC | 1 cut(s) | 796 |
| BsaJI | CCNNGG | 3 cut(s) | 864, 1023, 1107 |
| BsaWI | WCCGGW | 1 cut(s) | 318 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 218, 245, 248, 275, 560, 590, 774, 804 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 564, 621, 650, 1108 |
| BseBI | CCWGG | 2 cut(s) | 865, 1024 |
| BseDI | CCNNGG | 3 cut(s) | 864, 1023, 1107 |
| BseGI | GGATG | 1 cut(s) | 748 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 564, 621, 650, 1108 |
| BseMII | CTCAG | 2 cut(s) | 927, 1113 |
| BseRI | GAGGAG | 6 cut(s) | 223, 253, 493, 557, 680, 1124 |
| BseXI | GCAGC | 5 cut(s) | 339, 979, 995, 1221, 1244 |
| BseYI | CCCAGC | 3 cut(s) | 397, 639, 926 |
| BsgI | GTGCAG | 1 cut(s) | 978 |
| Bsh1236I | CGCG | 1 cut(s) | 374 |
| BshFI | GGCC | 3 cut(s) | 532, 625, 1022 |
| BshNI | GGYRCC | 1 cut(s) | 868 |
| BsiHKAI | GWGCWC | 1 cut(s) | 672 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1106, 1140 |
| BsiSI | CCGG | 1 cut(s) | 319 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 564, 621, 650, 1108 |
| BsmAI | GTCTC | 3 cut(s) | 307, 337, 796 |
| BsmBI | CGTCTC | 2 cut(s) | 307, 337 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| BsnI | GGCC | 3 cut(s) | 532, 625, 1022 |
| Bso31I | GGTCTC | 1 cut(s) | 796 |
| BsoBI | CYCGRG | 2 cut(s) | 1106, 1140 |
| Bsp1286I | GDGCHC | 1 cut(s) | 672 |
| Bsp143I | GATC | 2 cut(s) | 894, 1168 |
| BspANI | GGCC | 3 cut(s) | 532, 625, 1022 |
| BspCNI | CTCAG | 2 cut(s) | 928, 1114 |
| BspFNI | CGCG | 1 cut(s) | 374 |
| BspLI | GGNNCC | 2 cut(s) | 107, 870 |
| BspMAI | CTGCAG | 1 cut(s) | 985 |
| BspMI | ACCTGC | 1 cut(s) | 392 |
| BspPI | GGATC | 1 cut(s) | 1176 |
| BspT107I | GGYRCC | 1 cut(s) | 868 |
| BspTNI | GGTCTC | 1 cut(s) | 796 |
| BsrBI | CCGCTC | 2 cut(s) | 444, 723 |
| BssECI | CCNNGG | 3 cut(s) | 864, 1023, 1107 |
| BssMI | GATC | 2 cut(s) | 894, 1168 |
| BssNI | GRCGYC | 2 cut(s) | 276, 869 |
| Bst2UI | CCWGG | 2 cut(s) | 865, 1024 |
| Bst4CI | ACNGT | 2 cut(s) | 148, 830 |
| Bst6I | CTCTTC | 2 cut(s) | 454, 1209 |
| BstACI | GRCGYC | 2 cut(s) | 276, 869 |
| BstBAI | YACGTR | 1 cut(s) | 998 |
| BstC8I | GCNNGC | 5 cut(s) | 30, 165, 933, 1020, 1193 |
| BstDEI | CTNAG | 2 cut(s) | 936, 1122 |
| BstF5I | GGATG | 1 cut(s) | 748 |
| BstFNI | CGCG | 1 cut(s) | 374 |
| BstH2I | RGCGCY | 2 cut(s) | 872, 1244 |
| BstHHI | GCGC | 3 cut(s) | 389, 871, 1243 |
| BstKTI | GATC | 2 cut(s) | 897, 1171 |
| BstMAI | GTCTC | 3 cut(s) | 307, 337, 796 |
| BstMBI | GATC | 2 cut(s) | 894, 1168 |
| BstNI | CCWGG | 2 cut(s) | 865, 1024 |
| BstNSI | RCATGY | 2 cut(s) | 1052, 1195 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 299 |
| BstSCI | CCNGG | 2 cut(s) | 863, 1022 |
| BstSFI | CTRYAG | 1 cut(s) | 981 |
| BstUI | CGCG | 1 cut(s) | 374 |
| BstV1I | GCAGC | 5 cut(s) | 339, 979, 995, 1221, 1244 |
| BstV2I | GAAGAC | 1 cut(s) | 1107 |
| BsuRI | GGCC | 3 cut(s) | 532, 625, 1022 |
| BtsCI | GGATG | 1 cut(s) | 748 |
| BtsI | GCAGTG | 1 cut(s) | 1065 |
| BtsIMutI | CAGTG | 1 cut(s) | 1065 |
| BveI | ACCTGC | 1 cut(s) | 392 |
| Cac8I | GCNNGC | 5 cut(s) | 30, 165, 933, 1020, 1193 |
| CfoI | GCGC | 3 cut(s) | 389, 871, 1243 |
| Cfr13I | GGNCC | 2 cut(s) | 286, 531 |
| CseI | GACGC | 2 cut(s) | 284, 320 |
| Csp6I | GTAC | 2 cut(s) | 826, 999 |
| CviAII | CATG | 4 cut(s) | 85, 1008, 1049, 1192 |
| CviQI | GTAC | 2 cut(s) | 826, 999 |
| DdeI | CTNAG | 2 cut(s) | 936, 1122 |
| DinI | GGCGCC | 1 cut(s) | 870 |
| DpnI | GATC | 2 cut(s) | 896, 1170 |
| DpnII | GATC | 2 cut(s) | 894, 1168 |
| EaeI | YGGCCR | 1 cut(s) | 623 |
| Eam1104I | CTCTTC | 2 cut(s) | 454, 1209 |
| EarI | CTCTTC | 2 cut(s) | 454, 1209 |
| EciI | GGCGGA | 3 cut(s) | 35, 256, 1108 |
| Eco147I | AGGCCT | 1 cut(s) | 1022 |
| Eco31I | GGTCTC | 1 cut(s) | 796 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco47III | AGCGCT | 1 cut(s) | 1242 |
| Eco88I | CYCGRG | 2 cut(s) | 1106, 1140 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoRII | CCWGG | 2 cut(s) | 863, 1022 |
| EgeI | GGCGCC | 1 cut(s) | 870 |
| EheI | GGCGCC | 1 cut(s) | 870 |
| Esp3I | CGTCTC | 2 cut(s) | 307, 337 |
| FaeI | CATG | 4 cut(s) | 88, 1011, 1052, 1195 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 152, 184 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FatI | CATG | 4 cut(s) | 84, 1007, 1048, 1191 |
| FauI | CCCGC | 4 cut(s) | 172, 437, 491, 716 |
| FblI | GTMKAC | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 6 cut(s) | 340, 353, 984, 993, 1210, 1233 |
| FokI | GGATG | 1 cut(s) | 755 |
| Fsp4HI | GCNGC | 6 cut(s) | 340, 353, 984, 993, 1210, 1233 |
| FspBI | CTAG | 1 cut(s) | 1244 |
| GlaI | GCGC | 3 cut(s) | 388, 870, 1242 |
| GluI | GCNGC | 6 cut(s) | 340, 353, 984, 993, 1210, 1233 |
| GsaI | CCCAGC | 3 cut(s) | 401, 643, 930 |
| GsuI | CTGGAG | 1 cut(s) | 275 |
| HaeII | RGCGCY | 2 cut(s) | 872, 1244 |
| HaeIII | GGCC | 3 cut(s) | 532, 625, 1022 |
| HapII | CCGG | 1 cut(s) | 319 |
| HgaI | GACGC | 2 cut(s) | 284, 320 |
| HhaI | GCGC | 3 cut(s) | 389, 871, 1243 |
| Hin1I | GRCGYC | 2 cut(s) | 276, 869 |
| Hin1II | CATG | 4 cut(s) | 88, 1011, 1052, 1195 |
| Hin6I | GCGC | 3 cut(s) | 387, 869, 1241 |
| HinP1I | GCGC | 3 cut(s) | 387, 869, 1241 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HindIII | AAGCTT | 1 cut(s) | 608 |
| HinfI | GANTC | 8 cut(s) | 324, 357, 490, 586, 597, 818, 874, 1112 |
| HpaII | CCGG | 1 cut(s) | 319 |
| HphI | GGTGA | 5 cut(s) | 436, 547, 914, 1110, 1286 |
| Hpy166II | GTNNAC | 3 cut(s) | 310, 1001, 1046 |
| Hpy188I | TCNGA | 5 cut(s) | 105, 184, 274, 602, 1173 |
| Hpy188III | TCNNGA | 3 cut(s) | 292, 439, 1106 |
| Hpy8I | GTNNAC | 3 cut(s) | 310, 1001, 1046 |
| Hpy99I | CGWCG | 7 cut(s) | 126, 278, 284, 311, 314, 332, 365 |
| HpyAV | CCTTC | 5 cut(s) | 82, 178, 217, 460, 721 |
| HpyCH4III | ACNGT | 2 cut(s) | 148, 830 |
| HpyCH4IV | ACGT | 3 cut(s) | 760, 997, 1003 |
| HpyCH4V | TGCA | 7 cut(s) | 771, 983, 995, 1018, 1039, 1052, 1209 |
| HpyF3I | CTNAG | 2 cut(s) | 936, 1122 |
| HpySE526I | ACGT | 3 cut(s) | 760, 997, 1003 |
| Hsp92I | GRCGYC | 2 cut(s) | 276, 869 |
| Hsp92II | CATG | 4 cut(s) | 88, 1011, 1052, 1195 |
| HspAI | GCGC | 3 cut(s) | 387, 869, 1241 |
| KasI | GGCGCC | 1 cut(s) | 868 |
| Kzo9I | GATC | 2 cut(s) | 894, 1168 |
| LmnI | GCTCC | 4 cut(s) | 37, 86, 441, 667 |
| Lsp1109I | GCAGC | 5 cut(s) | 339, 979, 995, 1221, 1244 |
| LweI | GCATC | 1 cut(s) | 898 |
| MaeI | CTAG | 1 cut(s) | 1244 |
| MaeII | ACGT | 3 cut(s) | 760, 997, 1003 |
| MaeIII | GTNAC | 3 cut(s) | 472, 553, 875 |
| MalI | GATC | 2 cut(s) | 896, 1170 |
| MbiI | CCGCTC | 2 cut(s) | 444, 723 |
| MboI | GATC | 2 cut(s) | 894, 1168 |
| MboII | GAAGA | 7 cut(s) | 171, 471, 595, 917, 981, 1107, 1226 |
| MhlI | GDGCHC | 1 cut(s) | 672 |
| MlsI | TGGCCA | 1 cut(s) | 625 |
| MluCI | AATT | 7 cut(s) | 367, 645, 750, 917, 972, 1067, 1178 |
| MluNI | TGGCCA | 1 cut(s) | 625 |
| Mly113I | GGCGCC | 1 cut(s) | 869 |
| MlyI | GAGTC | 3 cut(s) | 499, 883, 1121 |
| MmeI | TCCRAC | 2 cut(s) | 207, 297 |
| Mox20I | TGGCCA | 1 cut(s) | 625 |
| MscI | TGGCCA | 1 cut(s) | 625 |
| MseI | TTAA | 2 cut(s) | 579, 851 |
| MslI | CAYNNNNRTG | 2 cut(s) | 882, 1006 |
| Msp20I | TGGCCA | 1 cut(s) | 625 |
| MspA1I | CMGCKG | 1 cut(s) | 986 |
| MspI | CCGG | 1 cut(s) | 319 |
| MspR9I | CCNGG | 2 cut(s) | 865, 1024 |
| MvaI | CCWGG | 2 cut(s) | 865, 1024 |
| MvnI | CGCG | 1 cut(s) | 374 |
| NarI | GGCGCC | 1 cut(s) | 869 |
| NdeII | GATC | 2 cut(s) | 894, 1168 |
| NlaIII | CATG | 4 cut(s) | 88, 1011, 1052, 1195 |
| NlaIV | GGNNCC | 2 cut(s) | 107, 870 |
| NmeAIII | GCCGAG | 2 cut(s) | 892, 897 |
| NmuCI | GTSAC | 3 cut(s) | 472, 553, 875 |
| NspI | RCATGY | 2 cut(s) | 1052, 1195 |
| PaeI | GCATGC | 1 cut(s) | 1195 |
| PaeR7I | CTCGAG | 1 cut(s) | 1140 |
| PceI | AGGCCT | 1 cut(s) | 1022 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 32, 109, 306 |
| PfeI | GAWTC | 5 cut(s) | 324, 357, 586, 597, 818 |
| PflFI | GACNNNGTC | 1 cut(s) | 278 |
| PkrI | GCNGC | 6 cut(s) | 341, 354, 985, 994, 1211, 1234 |
| PleI | GAGTC | 3 cut(s) | 498, 882, 1120 |
| PluTI | GGCGCC | 1 cut(s) | 872 |
| PpsI | GAGTC | 3 cut(s) | 498, 882, 1120 |
| Ppu21I | YACGTR | 1 cut(s) | 998 |
| PpuMI | RGGWCCY | 1 cut(s) | 286 |
| PshAI | GACNNNNGTC | 1 cut(s) | 299 |
| Psp5II | RGGWCCY | 1 cut(s) | 286 |
| Psp6I | CCWGG | 2 cut(s) | 863, 1022 |
| PspFI | CCCAGC | 3 cut(s) | 397, 639, 926 |
| PspGI | CCWGG | 2 cut(s) | 863, 1022 |
| PspN4I | GGNNCC | 2 cut(s) | 107, 870 |
| PspPI | GGNCC | 2 cut(s) | 286, 531 |
| PspPPI | RGGWCCY | 1 cut(s) | 286 |
| PspXI | VCTCGAGB | 1 cut(s) | 1140 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 768, 800 |
| PstI | CTGCAG | 1 cut(s) | 985 |
| PsyI | GACNNNGTC | 1 cut(s) | 278 |
| PvuII | CAGCTG | 1 cut(s) | 986 |
| RsaI | GTAC | 2 cut(s) | 827, 1000 |
| RsaNI | GTAC | 2 cut(s) | 826, 999 |
| RseI | CAYNNNNRTG | 2 cut(s) | 882, 1006 |
| SalI | GTCGAC | 1 cut(s) | 308 |
| SaqAI | TTAA | 2 cut(s) | 579, 851 |
| SatI | GCNGC | 6 cut(s) | 340, 353, 984, 993, 1210, 1233 |
| Sau3AI | GATC | 2 cut(s) | 894, 1168 |
| Sau96I | GGNCC | 2 cut(s) | 286, 531 |
| SchI | GAGTC | 3 cut(s) | 499, 883, 1121 |
| ScrFI | CCNGG | 2 cut(s) | 865, 1024 |
| SduI | GDGCHC | 1 cut(s) | 672 |
| SfaNI | GCATC | 1 cut(s) | 898 |
| SfcI | CTRYAG | 1 cut(s) | 981 |
| SfoI | GGCGCC | 1 cut(s) | 870 |
| Sfr274I | CTCGAG | 1 cut(s) | 1140 |
| SgrDI | CGTCGACG | 1 cut(s) | 308 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SlaI | CTCGAG | 1 cut(s) | 1140 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 882, 1006 |
| SmlI | CTYRAG | 2 cut(s) | 950, 1140 |
| SmoI | CTYRAG | 2 cut(s) | 950, 1140 |
| SphI | GCATGC | 1 cut(s) | 1195 |
| Sse9I | AATT | 7 cut(s) | 367, 645, 750, 917, 972, 1067, 1178 |
| SseBI | AGGCCT | 1 cut(s) | 1022 |
| SspDI | GGCGCC | 1 cut(s) | 868 |
| SspI | AATATT | 1 cut(s) | 943 |
| SspMI | CTAG | 1 cut(s) | 1244 |
| StuI | AGGCCT | 1 cut(s) | 1022 |
| StyD4I | CCNGG | 2 cut(s) | 863, 1022 |
| TaaI | ACNGT | 2 cut(s) | 148, 830 |
| TaiI | ACGT | 3 cut(s) | 763, 1000, 1006 |
| TaqI | TCGA | 6 cut(s) | 210, 282, 309, 595, 897, 1141 |
| TasI | AATT | 7 cut(s) | 367, 645, 750, 917, 972, 1067, 1178 |
| TauI | GCSGC | 1 cut(s) | 342 |
| TfiI | GAWTC | 5 cut(s) | 324, 357, 586, 597, 818 |
| Tru1I | TTAA | 2 cut(s) | 579, 851 |
| Tru9I | TTAA | 2 cut(s) | 579, 851 |
| TscAI | CASTG | 1 cut(s) | 1065 |
| TseFI | GTSAC | 3 cut(s) | 472, 553, 875 |
| TseI | GCWGC | 5 cut(s) | 352, 983, 992, 1209, 1232 |
| Tsp45I | GTSAC | 3 cut(s) | 472, 553, 875 |
| TspDTI | ATGAA | 6 cut(s) | 17, 743, 810, 910, 996, 1293 |
| TspGWI | ACGGA | 3 cut(s) | 24, 295, 722 |
| TspRI | CASTG | 1 cut(s) | 1065 |
| Tth111I | GACNNNGTC | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XapI | RAATTY | 1 cut(s) | 1178 |
| XceI | RCATGY | 2 cut(s) | 1052, 1195 |
| XhoI | CTCGAG | 1 cut(s) | 1140 |
| XmiI | GTMKAC | 1 cut(s) | 309 |
| XspI | CTAG | 1 cut(s) | 1244 |