Prupe.1G187900_v2.0.a1

vesicle-mediated transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0005704
Physical Location & Seq
Forward (+)
17205178 .. 17211224
6047 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G187900.2

Sequence Viewer

Length: 1416 bp
ATGAGAGTGAGCTCCAGCCCCACACAAAATCTGTGGCTACATGATATGAACTCCTACGTCCACCTCCACCATTTCTCCATCTCCACAAACCCATGCTCTCCCAAATCCTCCTCCTTCTCTTGCTCCATGCCTCGCCCTCCCAATCGCAATCGCAGAACTCGCGGCAACCGAAACCCTAGCCGCCCAACCACCACCATAACCACGACCACCACAAAACCCTACTTCTACCCTTCTTCTTCGCCATCGCGCCCTGATACACTCCAAGCCACCTTCGACCTCCAGTACCTCTACCACACCTCCCACTACAGCCTCCAACAATTCCTCTCCTCCGCCTCCGACGCCCTCCAAGACCTTCGGACCCTCGTCTCCGTCGACGCCGATAATCGCGTCATCGTCTCCTGTCGCCCTTCAACGCTGCGTTTCGTCGGAAATTTGGTGATTATGACCTTCGCCGTCGTTTTGGGGTTTAGGGTTTTGGTTGGGTTGGTGAGGTTAGGGTTTGGGGGTCGGTCCGGGTATGGGAGGGAGGGGACGGTGGTGAGGAGGGATAGGAGTCTTGGGGGAAAAGAGGTTGTGGTGGGGAGGGTAGAGAAGGATAGAGTTGATGTGAGGAAAAAGAAGAGTTTTGGGATGTTGGACAATCCTCTGTCGATGCCGAAGAGAACGGTGGTGGATGGTTTGGGGAGGCTTTTGAATAGCCGGGTTCGGGTTTGGGAGAAAAAAAAGCTGCCGAGTTGGTGGCCAAGCTCCATGCCGCAGCAGAGTTCGGTGGTGGATAAGGATTATTATCAAAGCGAAGCAGATAGATTGGTTAGAGCGATCACGGACAATAGAATGAGCGGAAAGGACATTGTGGAGGATGATATTATTCATTTACGTCAAATATGCAGGGCATCTAGAGTACGGGTCACCTTTGATACAACAAATACACGAGATTCATTCTACCGTGTGTCTGTTGACTTTGTCTTAAATACTTGCAGCAGGGCCCCAAGTCGCTCTACTTATGTTCAGATTGACGGCGAAGATGTTTGTCAATTTGTTGCTGGGCTTGCTGAGAATATTGGGCTTGACAACATTCGTGCTGCAAGAATTGTGTCTGCAGCCGTTGCTGCACGTACACGTTCATGCTTTTTGCAGGCGTGGGCTTTGGTAATGCAAGGTAAACATGCAGAAGCAGTACTGGAATTGTCAAAGATATGCCTTATTTTGCGGATATTTCCTCCCGAGGAGTCCTCTCCAGAGATGGAGATGGTGGCTCGAGGCTTGGCGAAACACTTGAAATTGAATCAGAGGCAATTTCTAATGAGCATGCTTGTTGGCATTTGTAGTGAAGAAAGCCAAAGAAGAGTCGCAGAAGCTTTGGGTTTGAATCTTGACCTATCTGGGCTGGACGGGGAAATCTTGGATGCCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

52.85

Weight (kDa)

9.7

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 840
AccI GTMKAC 1 cut(s) 372
AccII CGCG 3 cut(s) 162, 247, 387
AciI CCGC 6 cut(s) 162, 181, 330, 755, 840, 1210
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 1 cut(s) 430
AcyI GRCGYC 2 cut(s) 339, 375
AfaI GTAC 4 cut(s) 284, 903, 1117, 1179
AfiI CCNNNNNNNGG 2 cut(s) 519, 706
AflIII ACRYGT 1 cut(s) 1118
AgsI TTSAA 5 cut(s) 411, 694, 1279, 1285, 1369
AluBI AGCT 4 cut(s) 12, 727, 747, 1358
AluI AGCT 4 cut(s) 12, 727, 747, 1358
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 370, 400
Ama87I CYCGRG 2 cut(s) 1223, 1257
AoxI GGCC 2 cut(s) 740, 984
ApaI GGGCCC 1 cut(s) 988
ApeKI GCWGC 7 cut(s) 415, 727, 757, 978, 1082, 1100, 1109
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 4 cut(s) 357, 510, 984, 985
AsuC2I CCSGG 2 cut(s) 514, 701
AsuHPI GGTGA 4 cut(s) 448, 499, 550, 901
AvaI CYCGRG 2 cut(s) 1223, 1257
AvaII GGWCC 2 cut(s) 357, 510
BaeGI GKGCMC 1 cut(s) 988
BalI TGGCCA 1 cut(s) 742
BanII GRGCYC 2 cut(s) 14, 988
BauI CACGAG 1 cut(s) 930
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 7 cut(s) 402, 714, 769, 990, 1069, 1096, 1112
BccI CCATC 5 cut(s) 86, 250, 668, 1237, 1243
BceAI ACGGC 3 cut(s) 437, 1033, 1088
BcnI CCSGG 2 cut(s) 514, 701
BcoDI GTCTC 2 cut(s) 370, 400
BfaI CTAG 2 cut(s) 177, 897
BfmI CTRYAG 2 cut(s) 304, 1098
BmcAI AGTACT 1 cut(s) 1179
Bme1390I CCNGG 2 cut(s) 514, 701
Bme18I GGWCC 2 cut(s) 357, 510
BmeT110I CYCGRG 2 cut(s) 1223, 1257
BmgT120I GGNCC 4 cut(s) 357, 510, 984, 985
BmiI GGNNCC 3 cut(s) 359, 986, 987
BmrFI CCNGG 2 cut(s) 514, 701
BmsI GCATC 3 cut(s) 642, 902, 1396
BoxI GACNNNNGTC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 1217, 1249
BpmI CTGGAG 2 cut(s) 263, 1221
BpuMI CCSGG 2 cut(s) 514, 701
BsaAI YACGTR 1 cut(s) 1115
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 2 cut(s) 339, 375
BsaJI CCNNGG 1 cut(s) 1224
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 706
Bse1I ACTGG 2 cut(s) 280, 1185
Bse8I GATNNNNATC 1 cut(s) 786
BseDI CCNNGG 1 cut(s) 1224
BseGI GGATG 4 cut(s) 636, 679, 865, 1411
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 519, 706
BseMII CTCAG 1 cut(s) 1044
BseNI ACTGG 2 cut(s) 280, 1185
BseRI GAGGAG 4 cut(s) 100, 316, 556, 1241
BseSI GKGCMC 1 cut(s) 988
BseXI GCAGC 7 cut(s) 402, 714, 769, 990, 1069, 1096, 1112
BseYI CCCAGC 1 cut(s) 1043
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 3 cut(s) 162, 247, 387
BshFI GGCC 2 cut(s) 742, 986
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 2 cut(s) 1223, 1257
BsiSI CCGG 2 cut(s) 513, 700
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 2 cut(s) 519, 706
BsmAI GTCTC 2 cut(s) 370, 400
BsmBI CGTCTC 2 cut(s) 370, 400
BsmFI GGGAC 1 cut(s) 544
BsnI GGCC 2 cut(s) 742, 986
BsoBI CYCGRG 2 cut(s) 1223, 1257
Bsp120I GGGCCC 1 cut(s) 984
Bsp1286I GDGCHC 2 cut(s) 14, 988
Bsp143I GATC 1 cut(s) 819
BspACI CCGC 6 cut(s) 162, 181, 330, 755, 840, 1210
BspANI GGCC 2 cut(s) 742, 986
BspCNI CTCAG 1 cut(s) 1045
BspFNI CGCG 3 cut(s) 162, 247, 387
BspLI GGNNCC 3 cut(s) 359, 986, 987
BspMAI CTGCAG 1 cut(s) 1102
BsrBI CCGCTC 1 cut(s) 840
BsrI ACTGG 2 cut(s) 280, 1185
BssECI CCNNGG 1 cut(s) 1224
BssMI GATC 1 cut(s) 819
BssNI GRCGYC 2 cut(s) 339, 375
BssSI CACGAG 1 cut(s) 930
Bst2BI CACGAG 1 cut(s) 930
Bst4CI ACNGT 3 cut(s) 535, 667, 947
Bst6I CTCTTC 3 cut(s) 614, 653, 1339
BstACI GRCGYC 2 cut(s) 339, 375
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstBAI YACGTR 1 cut(s) 1115
BstC8I GCNNGC 3 cut(s) 1050, 1137, 1310
BstDEI CTNAG 1 cut(s) 1053
BstEII GGTNACC 1 cut(s) 907
BstF5I GGATG 4 cut(s) 636, 679, 865, 1411
BstFNI CGCG 3 cut(s) 162, 247, 387
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 822
BstMAI GTCTC 2 cut(s) 370, 400
BstMBI GATC 1 cut(s) 819
BstMWI GCNNNNNNNGC 5 cut(s) 159, 338, 1049, 1106, 1109
BstNSI RCATGY 2 cut(s) 1169, 1312
BstPAI GACNNNNGTC 1 cut(s) 362
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 2 cut(s) 512, 699
BstSFI CTRYAG 2 cut(s) 304, 1098
BstSLI GKGCMC 1 cut(s) 988
BstUI CGCG 3 cut(s) 162, 247, 387
BstV1I GCAGC 7 cut(s) 402, 714, 769, 990, 1069, 1096, 1112
BsuRI GGCC 2 cut(s) 742, 986
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 4 cut(s) 636, 679, 865, 1411
Cac8I GCNNGC 3 cut(s) 1050, 1137, 1310
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 4 cut(s) 357, 510, 984, 985
CpoI CGGWCCG 1 cut(s) 510
CseI GACGC 3 cut(s) 347, 376, 383
Csp6I GTAC 4 cut(s) 283, 902, 1116, 1178
CspCI CAANNNNNGTGG 2 cut(s) 14, 49
CspI CGGWCCG 1 cut(s) 510
CviAII CATG 7 cut(s) 41, 93, 127, 751, 1125, 1166, 1309
CviQI GTAC 4 cut(s) 283, 902, 1116, 1178
DdeI CTNAG 1 cut(s) 1053
DpnI GATC 1 cut(s) 821
DpnII GATC 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 3 cut(s) 614, 653, 1339
EarI CTCTTC 3 cut(s) 614, 653, 1339
EciI GGCGGA 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 14, 988
Eco47I GGWCC 2 cut(s) 357, 510
Eco53kI GAGCTC 1 cut(s) 12
Eco88I CYCGRG 2 cut(s) 1223, 1257
Eco91I GGTNACC 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 2 cut(s) 984, 985
EcoO65I GGTNACC 1 cut(s) 907
EcoT38I GRGCYC 2 cut(s) 14, 988
Esp3I CGTCTC 2 cut(s) 370, 400
FaeI CATG 7 cut(s) 44, 96, 130, 754, 1128, 1169, 1312
FaqI GGGAC 1 cut(s) 544
FatI CATG 7 cut(s) 40, 92, 126, 750, 1124, 1165, 1308
FblI GTMKAC 1 cut(s) 372
FokI GGATG 3 cut(s) 643, 686, 872
FriOI GRGCYC 2 cut(s) 14, 988
FspBI CTAG 2 cut(s) 177, 897
GlaI GCGC 1 cut(s) 248
GsaI CCCAGC 1 cut(s) 1047
GsuI CTGGAG 2 cut(s) 263, 1221
HaeIII GGCC 2 cut(s) 742, 986
HapII CCGG 2 cut(s) 513, 700
HgaI GACGC 3 cut(s) 347, 376, 383
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 2 cut(s) 339, 375
Hin1II CATG 7 cut(s) 44, 96, 130, 754, 1128, 1169, 1312
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 2 cut(s) 373, 958
HindII GTYRAC 2 cut(s) 373, 958
HindIII AAGCTT 1 cut(s) 1356
HinfI GANTC 6 cut(s) 553, 935, 1229, 1285, 1347, 1369
HpaII CCGG 2 cut(s) 513, 700
HphI GGTGA 4 cut(s) 448, 499, 550, 901
Hpy166II GTNNAC 5 cut(s) 61, 373, 958, 1118, 1163
Hpy188I TCNGA 5 cut(s) 337, 357, 428, 1011, 1290
Hpy188III TCNNGA 4 cut(s) 897, 1223, 1238, 1373
Hpy8I GTNNAC 5 cut(s) 61, 373, 958, 1118, 1163
Hpy99I CGWCG 5 cut(s) 341, 374, 377, 428, 458
HpyAV CCTTC 7 cut(s) 124, 240, 280, 362, 417, 457, 586
HpyCH4III ACNGT 3 cut(s) 535, 667, 947
HpyCH4IV ACGT 4 cut(s) 57, 877, 1114, 1120
HpyCH4V TGCA 8 cut(s) 888, 978, 1085, 1100, 1112, 1135, 1156, 1169
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 338, 1049, 1106, 1109
HpyF3I CTNAG 1 cut(s) 1053
HpySE526I ACGT 4 cut(s) 57, 877, 1114, 1120
Hsp92I GRCGYC 2 cut(s) 339, 375
Hsp92II CATG 7 cut(s) 44, 96, 130, 754, 1128, 1169, 1312
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 819
LmnI GCTCC 3 cut(s) 17, 128, 752
Lsp1109I GCAGC 7 cut(s) 402, 714, 769, 990, 1069, 1096, 1112
LweI GCATC 3 cut(s) 642, 902, 1396
MaeI CTAG 2 cut(s) 177, 897
MaeII ACGT 4 cut(s) 57, 877, 1114, 1120
MaeIII GTNAC 1 cut(s) 907
MalI GATC 1 cut(s) 821
MbiI CCGCTC 1 cut(s) 840
MboI GATC 1 cut(s) 819
MboII GAAGA 7 cut(s) 225, 228, 631, 670, 1034, 1343, 1356
MhlI GDGCHC 2 cut(s) 14, 988
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 7 cut(s) 317, 430, 1034, 1089, 1184, 1280, 1295
MluNI TGGCCA 1 cut(s) 742
MlyI GAGTC 3 cut(s) 562, 1238, 1356
MmeI TCCRAC 4 cut(s) 337, 360, 406, 615
Mox20I TGGCCA 1 cut(s) 742
MscI TGGCCA 1 cut(s) 742
MseI TTAA 1 cut(s) 968
MslI CAYNNNNRTG 1 cut(s) 1123
Msp20I TGGCCA 1 cut(s) 742
MspI CCGG 2 cut(s) 513, 700
MspR9I CCNGG 2 cut(s) 514, 701
MvnI CGCG 3 cut(s) 162, 247, 387
MwoI GCNNNNNNNGC 5 cut(s) 159, 338, 1049, 1106, 1109
NciI CCSGG 2 cut(s) 514, 701
NdeII GATC 1 cut(s) 819
NlaIII CATG 7 cut(s) 44, 96, 130, 754, 1128, 1169, 1312
NlaIV GGNNCC 3 cut(s) 359, 986, 987
NmeAIII GCCGAG 1 cut(s) 756
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 2 cut(s) 1169, 1312
PaeI GCATGC 1 cut(s) 1312
PaeR7I CTCGAG 1 cut(s) 1257
PcsI WCGNNNNNNNCGW 2 cut(s) 166, 369
PfeI GAWTC 3 cut(s) 935, 1285, 1369
PflFI GACNNNGTC 1 cut(s) 962
PleI GAGTC 3 cut(s) 561, 1237, 1355
PpsI GAGTC 3 cut(s) 561, 1237, 1355
Ppu21I YACGTR 1 cut(s) 1115
PshAI GACNNNNGTC 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 14
PspEI GGTNACC 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 1043
PspN4I GGNNCC 3 cut(s) 359, 986, 987
PspOMI GGGCCC 1 cut(s) 984
PspPI GGNCC 4 cut(s) 357, 510, 984, 985
PspXI VCTCGAGB 1 cut(s) 1257
PstI CTGCAG 1 cut(s) 1102
PsyI GACNNNGTC 1 cut(s) 962
RsaI GTAC 4 cut(s) 284, 903, 1117, 1179
RsaNI GTAC 4 cut(s) 283, 902, 1116, 1178
RseI CAYNNNNRTG 1 cut(s) 1123
Rsr2I CGGWCCG 1 cut(s) 510
RsrII CGGWCCG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 14
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 968
Sau3AI GATC 1 cut(s) 819
Sau96I GGNCC 4 cut(s) 357, 510, 984, 985
ScaI AGTACT 1 cut(s) 1179
SchI GAGTC 3 cut(s) 562, 1238, 1356
ScrFI CCNGG 2 cut(s) 514, 701
SduI GDGCHC 2 cut(s) 14, 988
SfaNI GCATC 3 cut(s) 642, 902, 1396
SfcI CTRYAG 2 cut(s) 304, 1098
Sfr274I CTCGAG 1 cut(s) 1257
SgrDI CGTCGACG 1 cut(s) 371
SinI GGWCC 2 cut(s) 357, 510
SlaI CTCGAG 1 cut(s) 1257
SmiMI CAYNNNNRTG 1 cut(s) 1123
SmlI CTYRAG 1 cut(s) 1257
SmoI CTYRAG 1 cut(s) 1257
SphI GCATGC 1 cut(s) 1312
Sse9I AATT 7 cut(s) 317, 430, 1034, 1089, 1184, 1280, 1295
SsiI CCGC 6 cut(s) 162, 181, 330, 755, 840, 1210
SspI AATATT 1 cut(s) 1060
SspMI CTAG 2 cut(s) 177, 897
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 512, 699
TaaI ACNGT 3 cut(s) 535, 667, 947
TaiI ACGT 4 cut(s) 60, 880, 1117, 1123
TaqI TCGA 4 cut(s) 273, 372, 650, 1258
TaqII GACCGA 1 cut(s) 498
TasI AATT 7 cut(s) 317, 430, 1034, 1089, 1184, 1280, 1295
TatI WGTACW 1 cut(s) 1177
TauI GCSGC 3 cut(s) 165, 183, 757
TfiI GAWTC 3 cut(s) 935, 1285, 1369
Tru1I TTAA 1 cut(s) 968
Tru9I TTAA 1 cut(s) 968
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 7 cut(s) 415, 727, 757, 978, 1082, 1100, 1109
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 4 cut(s) 62, 860, 927, 1113
TspGWI ACGGA 2 cut(s) 358, 839
Tth111I GACNNNGTC 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 357, 510
XapI RAATTY 1 cut(s) 430
XbaI TCTAGA 1 cut(s) 896
XceI RCATGY 2 cut(s) 1169, 1312
XhoI CTCGAG 1 cut(s) 1257
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 2 cut(s) 177, 897
ZrmI AGTACT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.