Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005704

Physical Location & Seq

Genomic Coordinates Reverse (-)

19474209 .. 19476157

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0207700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTGTGTGGGCTGTGGCAGGTGCATCCGACTTACTCCTGAAGAGCTGGAGAATTTCGGTACTCCAGACTTCACTGTATACAATGCCGGTCAGTTCCCATGTAATCGTTACACTCATTACATGACATCCTCTACTAGTGTAGACATCAACCTTGCTAGCAAGGAAATGGTCATCCTTGGCGCCATGTACGCCGGGAAAATGAAGAAAGGCACCAGAAAGACAACTCTATCGACGGATCACAATAGGTACTTAATTGGAGATGATGAACACTGCTGGAGTGAGAATGGTGTATCAAATACCGAAGTGCTGGAAAATGTCACATTCGACGAGCATACACGAGAGGTGGATTATAGTGACAAAATCTATTACAGAGAATTCTCGAGCAGCGTATCCCCATTCAGTACATTCCCAACGCAAAAGATACCATGTGTTGGCCCTCATCCAAAGAATGTGATACTTTTGCCATGTGATGCATTTGGTGTATTCCCACCTGTCAGCAAGTTAAACCTGGCACAGACCATGTACCATTTCATCAGTGGTTATACTGCCCTGGTTGCTGGAACTGAAGAGGGTGTGAAGGAGCCACGGGCAACATTCTCGGCTTGCTTTGGTGCAGCATTTTTGATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAACATGGTGCAACTGCATGGCTGGCCAAACTGTGGTCAAACAAGAATGCATATGAGGAAACTCTACTGAAGCTGGCTAGCCTATTCACGACCAACTTTGAGACTTTCACAGACTGCAAGATTGGCAACGACAATAACCTGACGGAAGACCTCCTTGCAGCTGGTCCTATTTTTCAGAACTTCAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.04

Weight (kDa)

5.92

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	9 - 70	3e-13	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	70 - 101	1.4e-10	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	102 - 233	1.8e-51	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43235
fragaria_vesca	FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340
malus_domestica	MD04G1038000.v1.1
prunus_persica	Prupe.1G187900_v2.0.a1 Prupe.1G187900_v2.0.a1
pyrus_communis	pycom04g03090
rosa_chinensis	RchiOBHm_Chr4g0407651
rosa_laevigata	RLG00000002116 RLG00000008704
rosa_multiflora	Rmu_sc0001743.1_g000005 Rmu_sc0001900.1_g000058 Rmu_sc0006439.1_g000002 Rmu_sc0011989.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352250
rosa_rugosa	Rorug02G0207700 Rorug04G0081100
rosa_samantha	Rh4AG145700 Rh4BG143400 Rh4BG241800 Rh4CG152300 Rh4DG139900
rosa_wichuraiana	Rw4G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	9
AccB1I	GGYRCC	2 cut(s)	179, 209
AccB7I	CCANNNNNTGG	2 cut(s)	431, 705
AccI	GTMKAC	2 cut(s)	78, 141
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	2 cut(s)	52, 374
AcuI	CTGAAG	3 cut(s)	60, 585, 761
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	5 cut(s)	61, 188, 248, 403, 524
AfiI	CCNNNNNNNGG	2 cut(s)	431, 705
AgsI	TTSAA	1 cut(s)	856
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	2 cut(s)	507, 549
AluBI	AGCT	3 cut(s)	46, 745, 833
AluI	AGCT	3 cut(s)	46, 745, 833
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	2 cut(s)	433, 696
ApeKI	GCWGC	4 cut(s)	384, 614, 647, 830
ApoI	RAATTY	2 cut(s)	52, 374
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	434, 836
AsuC2I	CCSGG	1 cut(s)	193
AsuNHI	GCTAGC	2 cut(s)	155, 749
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	179, 209
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	825
BbvI	GCAGC	4 cut(s)	396, 626, 659, 842
BcgI	CGANNNNNNTGC	2 cut(s)	579, 613
BciT130I	CCWGG	2 cut(s)	509, 551
BciVI	GTATCC	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	767
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	3 cut(s)	135, 156, 750
BfoI	RGCGCY	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	4 cut(s)	385, 615, 648, 831
BlsI	GCNGC	4 cut(s)	386, 616, 649, 832
Bme1390I	CCNGG	3 cut(s)	193, 509, 551
Bme18I	GGWCC	1 cut(s)	836
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	434, 836
BmiI	GGNNCC	3 cut(s)	181, 211, 582
BmrFI	CCNGG	3 cut(s)	193, 509, 551
BmsI	GCATC	4 cut(s)	33, 460, 640, 657
BmtI	GCTAGC	2 cut(s)	159, 753
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	3 cut(s)	48, 68, 295
BpuMI	CCSGG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	175, 549, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 705
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	509, 551
BseDI	CCNNGG	3 cut(s)	175, 549, 584
BseGI	GGATG	5 cut(s)	24, 125, 171, 439, 631
BseLI	CCNNNNNNNGG	2 cut(s)	431, 705
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	396, 626, 659, 842
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	435, 698
BshNI	GGYRCC	2 cut(s)	179, 209
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	87, 192
BslI	CCNNNNNNNGG	2 cut(s)	431, 705
BsmAI	GTCTC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	435, 698
BsoBI	CYCGRG	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	435, 698
BspCNI	CTCAG	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	181, 211, 582
BspMI	ACCTGC	1 cut(s)	9
BspOI	GCTAGC	2 cut(s)	159, 753
BspPI	GGATC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	2 cut(s)	179, 209
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	175, 549, 584
BssMI	GATC	1 cut(s)	235
BssNAI	GTATAC	1 cut(s)	79
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	509, 551
Bst4CI	ACNGT	2 cut(s)	76, 705
Bst6I	CTCTTC	2 cut(s)	36, 561
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	6 cut(s)	157, 604, 657, 696, 747, 751
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	5 cut(s)	24, 125, 171, 439, 631
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 554, 656, 695, 795
BstNI	CCWGG	2 cut(s)	509, 551
BstSCI	CCNGG	3 cut(s)	191, 507, 549
BstV1I	GCAGC	4 cut(s)	396, 626, 659, 842
BstV2I	GAAGAC	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	435, 698
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	5 cut(s)	24, 125, 171, 439, 631
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	72, 268, 541
BveI	ACCTGC	1 cut(s)	9
Cac8I	GCNNGC	6 cut(s)	157, 604, 657, 696, 747, 751
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	434, 836
Csp6I	GTAC	5 cut(s)	60, 187, 247, 402, 523
CviAII	CATG	8 cut(s)	99, 121, 184, 426, 465, 520, 677, 690
CviQI	GTAC	5 cut(s)	60, 187, 247, 402, 523
DdeI	CTNAG	1 cut(s)	660
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	36, 561
EarI	CTCTTC	2 cut(s)	36, 561
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	3 cut(s)	60, 585, 761
Eco88I	CYCGRG	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	507, 549
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	2 cut(s)	475, 724
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	8 cut(s)	102, 124, 187, 429, 468, 523, 680, 693
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FatI	CATG	8 cut(s)	98, 120, 183, 425, 464, 519, 676, 689
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	2 cut(s)	78, 141
Fnu4HI	GCNGC	4 cut(s)	385, 615, 648, 831
FokI	GGATG	5 cut(s)	11, 112, 158, 426, 618
Fsp4HI	GCNGC	4 cut(s)	385, 615, 648, 831
FspBI	CTAG	3 cut(s)	135, 156, 750
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	4 cut(s)	385, 615, 648, 831
GsuI	CTGGAG	3 cut(s)	48, 68, 295
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	435, 698
HapII	CCGG	2 cut(s)	87, 192
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	8 cut(s)	102, 124, 187, 429, 468, 523, 680, 693
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	87, 192
Hpy166II	GTNNAC	2 cut(s)	79, 142
Hpy188I	TCNGA	2 cut(s)	29, 849
Hpy188III	TCNNGA	4 cut(s)	38, 65, 379, 760
Hpy8I	GTNNAC	2 cut(s)	79, 142
Hpy99I	CGWCG	2 cut(s)	235, 329
HpyAV	CCTTC	1 cut(s)	571
HpyCH4III	ACNGT	2 cut(s)	76, 705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 554, 656, 695, 795
HpyF3I	CTNAG	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	8 cut(s)	102, 124, 187, 429, 468, 523, 680, 693
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	4 cut(s)	396, 626, 659, 842
LweI	GCATC	4 cut(s)	33, 460, 640, 657
MaeI	CTAG	3 cut(s)	135, 156, 750
MaeIII	GTNAC	3 cut(s)	107, 316, 353
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	5 cut(s)	53, 214, 578, 676, 830
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	3 cut(s)	52, 252, 374
MluNI	TGGCCA	1 cut(s)	698
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	6 cut(s)	139, 334, 447, 562, 721, 833
Mox20I	TGGCCA	1 cut(s)	698
Mph1103I	ATGCAT	2 cut(s)	475, 724
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	2 cut(s)	251, 503
Msp20I	TGGCCA	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	2 cut(s)	87, 192
MspR9I	CCNGG	3 cut(s)	193, 509, 551
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	2 cut(s)	509, 551
MwoI	GCNNNNNNNGC	5 cut(s)	188, 554, 656, 695, 795
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	193
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	1 cut(s)	235
NheI	GCTAGC	2 cut(s)	155, 749
NlaIII	CATG	8 cut(s)	102, 124, 187, 429, 468, 523, 680, 693
NlaIV	GGNNCC	3 cut(s)	181, 211, 582
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	2 cut(s)	316, 353
NsiI	ATGCAT	2 cut(s)	475, 724
PaeR7I	CTCGAG	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	724
PflMI	CCANNNNNTGG	2 cut(s)	431, 705
PkrI	GCNGC	4 cut(s)	386, 616, 649, 832
PluTI	GGCGCC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	507, 549
PspGI	CCWGG	2 cut(s)	507, 549
PspN4I	GGNNCC	3 cut(s)	181, 211, 582
PspPI	GGNCC	2 cut(s)	434, 836
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	5 cut(s)	61, 188, 248, 403, 524
RsaNI	GTAC	5 cut(s)	60, 187, 247, 402, 523
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	251, 503
SatI	GCNGC	4 cut(s)	385, 615, 648, 831
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	434, 836
ScrFI	CCNGG	3 cut(s)	193, 509, 551
SfaNI	GCATC	4 cut(s)	33, 460, 640, 657
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	379
SinI	GGWCC	1 cut(s)	836
SlaI	CTCGAG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	3 cut(s)	52, 252, 374
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	3 cut(s)	135, 156, 750
StyD4I	CCNGG	3 cut(s)	191, 507, 549
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	76, 705
TaqI	TCGA	3 cut(s)	230, 324, 380
TasI	AATT	3 cut(s)	52, 252, 374
TatI	WGTACW	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	251, 503
Tru9I	TTAA	2 cut(s)	251, 503
TscAI	CASTG	3 cut(s)	79, 275, 541
TseFI	GTSAC	2 cut(s)	316, 353
TseI	GCWGC	4 cut(s)	384, 614, 647, 830
Tsp45I	GTSAC	2 cut(s)	316, 353
TspDTI	ATGAA	3 cut(s)	215, 279, 520
TspGWI	ACGGA	2 cut(s)	248, 830
TspRI	CASTG	3 cut(s)	79, 275, 541
Van91I	CCANNNNNTGG	2 cut(s)	431, 705
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	2 cut(s)	52, 374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	78, 141
XspI	CTAG	3 cut(s)	135, 156, 750
Zsp2I	ATGCAT	2 cut(s)	475, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.