Rh4DG139900

vesicle-mediated transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005704
Physical Location & Seq
Forward (+)
27831018 .. 27836584
5567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG139900.1

Sequence Viewer

Length: 1029 bp
ATGAATTCCTCCGCCACGGCCACGGCCACGGCCACCGCCCACTCGCTCGCTCCGTCGCCATTCCACCGCTTCCGCAACCCATGCGCTCCCAAAGCCTCCTTCTCCTGCTCCATGCCTCGCCCTCCCAATCGAAACCGCCGAAACCGCAGACGAAACTCCGACAGCGCCACCACCGCCACCTTCACCACCGTCCACACCGCCAAGCCCGCCTTCTACACTTCCTCAGACCCTGAAAACATCCAAGCCACCTTCGACCTCAACAGCCTCTACCACTCCTCCCGCTCCTACCTCCGCCACTTCCTCTCCTCCGCCGCCGACGCCGCCGACGACCTCCAGACCCTCGTCTCCGTCGACGTCGACCGCAGGATCCTCGTCTCCTGCCGCCCCTCCACGCTGCGGTTCGTCGGCAATTTCGTCGTGTTGACCTGCGCCGTCGTGCTGGGGTTTAGGGTTCTGGTTGGGCTGGTGAGGTTAGGGTTTGGGAGCGGGTCGGGTTACGGAAGGGAGAAGGTGGTGACGAGGAGGGATAGGAGTCTTGGGGGGAAGGAGGTTGTGGTAGCTAGGATAGAGAGGCCAAGAGCAGAGGAGGTTAGTGTCAAGAAGAACAGCGGTTTGGGGATTTTGGATAATCCCCTATCGTCGGTGAGGAAGAGCTCAATGGTGGCTGGGATGGAGAGAGTGTTTAAGAATCGGGTTCGCTTCGGGGAGAAGCTTCCCCAATGGTGGCCAACTACAACTTCCCAGCCCATTTTAGGGGTCGATAATGAGGAGCACCAGAGAGAAGCAAATAGATTGGTTAGAGCAATCACCGACAATAGAATGAGCGGGAAGGACATTATGGAGGATGATATAATTCATTTACGTCAAATATGCAGGACATATGGAGTACGGGTCTCCTTTGATACTACAAATACACGGGATTCATTGTACCGTGTGTCTGTTGACTTTGTCTTACATGTATGCAGCAGGTATTCTTCTGGGCTGCCATGTGTAACGTTTACCTTAGTTTCTAATTGCCCCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.13

Weight (kDa)

10.07

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
Acc36I ACCTGC 2 cut(s) 434, 957
AccBSI CCGCTC 3 cut(s) 282, 486, 825
AccI GTMKAC 2 cut(s) 351, 357
AclI AACGTT 1 cut(s) 995
AclWI GGATC 2 cut(s) 361, 374
AcoI YGGCCR 4 cut(s) 18, 24, 30, 725
AcsI RAATTY 1 cut(s) 4
AcyI GRCGYC 2 cut(s) 318, 354
AfaI GTAC 2 cut(s) 888, 929
AfiI CCNNNNNNNGG 5 cut(s) 396, 640, 723, 752, 753
AflIII ACRYGT 1 cut(s) 955
AjuI GAANNNNNNNTTGG 8 cut(s) 83, 115, 194, 226, 596, 628, 721, 753
AluBI AGCT 3 cut(s) 560, 654, 712
AluI AGCT 3 cut(s) 560, 654, 712
Alw21I GWGCWC 2 cut(s) 656, 774
Alw26I GTCTC 3 cut(s) 349, 379, 898
AlwI GGATC 2 cut(s) 361, 374
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 5 cut(s) 18, 24, 30, 572, 725
ApeKI GCWGC 3 cut(s) 394, 963, 982
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 3 cut(s) 86, 167, 431
AsuHPI GGTGA 5 cut(s) 175, 478, 526, 655, 799
BalI TGGCCA 1 cut(s) 727
BamHI GGATCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 656, 774
BbvI GCAGC 3 cut(s) 381, 969, 975
BccI CCATC 1 cut(s) 664
BceAI ACGGC 4 cut(s) 33, 39, 45, 416
BcgI CGANNNNNNTGC 4 cut(s) 352, 386, 397, 431
BcoDI GTCTC 3 cut(s) 349, 379, 898
BfaI CTAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 168
BfuAI ACCTGC 2 cut(s) 434, 957
BisI GCNGC 6 cut(s) 312, 321, 382, 395, 964, 983
BlsI GCNGC 6 cut(s) 313, 322, 383, 396, 965, 984
BmiI GGNNCC 1 cut(s) 368
BoxI GACNNNNGTC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 317
BsaHI GRCGYC 2 cut(s) 318, 354
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 3 cut(s) 15, 21, 27
BsaXI ACNNNNNCTCC 8 cut(s) 260, 287, 290, 317, 665, 695, 876, 906
Bsc4I CCNNNNNNNGG 5 cut(s) 396, 640, 723, 752, 753
BseDI CCNNGG 3 cut(s) 15, 21, 27
BseGI GGATG 3 cut(s) 237, 675, 850
BseLI CCNNNNNNNGG 5 cut(s) 396, 640, 723, 752, 753
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 5 cut(s) 265, 295, 535, 599, 782
BseXI GCAGC 3 cut(s) 381, 969, 975
BseYI CCCAGC 3 cut(s) 439, 665, 741
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 5 cut(s) 20, 26, 32, 574, 727
BsiEI CGRYCG 1 cut(s) 361
BsiHKAI GWGCWC 2 cut(s) 656, 774
BslI CCNNNNNNNGG 5 cut(s) 396, 640, 723, 752, 753
BsmAI GTCTC 3 cut(s) 349, 379, 898
BsmBI CGTCTC 2 cut(s) 349, 379
BsnI GGCC 5 cut(s) 20, 26, 32, 574, 727
Bso31I GGTCTC 1 cut(s) 898
Bsp1286I GDGCHC 2 cut(s) 656, 774
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 5 cut(s) 20, 26, 32, 574, 727
BspCNI CTCAG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 368
BspMI ACCTGC 2 cut(s) 434, 957
BspPI GGATC 2 cut(s) 361, 374
BspQI GCTCTTC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 898
BsrBI CCGCTC 3 cut(s) 282, 486, 825
BssECI CCNNGG 3 cut(s) 15, 21, 27
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 2 cut(s) 318, 354
Bst4CI ACNGT 2 cut(s) 190, 932
Bst6I CTCTTC 1 cut(s) 644
BstACI GRCGYC 2 cut(s) 318, 354
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 48, 207
BstDEI CTNAG 2 cut(s) 223, 1003
BstDSI CCRYGG 3 cut(s) 15, 21, 27
BstF5I GGATG 3 cut(s) 237, 675, 850
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 3 cut(s) 86, 167, 431
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 3 cut(s) 349, 379, 898
BstMBI GATC 1 cut(s) 366
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 7 cut(s) 81, 92, 144, 173, 206, 317, 320
BstNSI RCATGY 1 cut(s) 959
BstPAI GACNNNNGTC 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 381, 969, 975
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 5 cut(s) 20, 26, 32, 574, 727
BtgI CCRYGG 3 cut(s) 15, 21, 27
BtsCI GGATG 3 cut(s) 237, 675, 850
BveI ACCTGC 2 cut(s) 434, 957
Cac8I GCNNGC 2 cut(s) 48, 207
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 3 cut(s) 86, 167, 431
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 887, 928
CviAII CATG 4 cut(s) 81, 112, 956, 987
CviQI GTAC 2 cut(s) 887, 928
DdeI CTNAG 2 cut(s) 223, 1003
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
EaeI YGGCCR 4 cut(s) 18, 24, 30, 725
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
EciI GGCGGA 2 cut(s) 281, 298
Ecl136II GAGCTC 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 898
Eco53kI GAGCTC 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 656
Esp3I CGTCTC 2 cut(s) 349, 379
FaeI CATG 4 cut(s) 84, 115, 959, 990
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 4 cut(s) 80, 111, 955, 986
FauI CCCGC 4 cut(s) 214, 287, 479, 818
FauNDI CATATG 1 cut(s) 880
FblI GTMKAC 2 cut(s) 351, 357
Fnu4HI GCNGC 6 cut(s) 312, 321, 382, 395, 964, 983
FokI GGATG 3 cut(s) 224, 682, 857
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 6 cut(s) 312, 321, 382, 395, 964, 983
FspBI CTAG 1 cut(s) 561
GlaI GCGC 3 cut(s) 85, 166, 430
GluI GCNGC 6 cut(s) 312, 321, 382, 395, 964, 983
GsaI CCCAGC 3 cut(s) 443, 669, 745
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 5 cut(s) 20, 26, 32, 574, 727
HgaI GACGC 1 cut(s) 326
HhaI GCGC 3 cut(s) 86, 167, 431
Hin1I GRCGYC 2 cut(s) 318, 354
Hin1II CATG 4 cut(s) 84, 115, 959, 990
Hin6I GCGC 3 cut(s) 84, 165, 429
HinP1I GCGC 3 cut(s) 84, 165, 429
HincII GTYRAC 4 cut(s) 352, 358, 423, 943
HindII GTYRAC 4 cut(s) 352, 358, 423, 943
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 3 cut(s) 532, 688, 920
HphI GGTGA 5 cut(s) 175, 478, 526, 655, 799
Hpy166II GTNNAC 6 cut(s) 193, 352, 358, 423, 943, 999
Hpy188I TCNGA 2 cut(s) 160, 226
Hpy188III TCNNGA 2 cut(s) 334, 598
Hpy8I GTNNAC 6 cut(s) 193, 352, 358, 423, 943, 999
HpyAV CCTTC 8 cut(s) 109, 190, 220, 259, 495, 502, 538, 823
HpyCH4III ACNGT 2 cut(s) 190, 932
HpyCH4IV ACGT 3 cut(s) 354, 862, 995
HpyCH4V TGCA 2 cut(s) 873, 963
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 92, 144, 173, 206, 317, 320
HpyF3I CTNAG 2 cut(s) 223, 1003
HpySE526I ACGT 3 cut(s) 354, 862, 995
Hsp92I GRCGYC 2 cut(s) 318, 354
Hsp92II CATG 4 cut(s) 84, 115, 959, 990
HspAI GCGC 3 cut(s) 84, 165, 429
Kzo9I GATC 1 cut(s) 366
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 6 cut(s) 55, 91, 113, 287, 483, 769
Lsp1109I GCAGC 3 cut(s) 381, 969, 975
MaeI CTAG 1 cut(s) 561
MaeII ACGT 3 cut(s) 354, 862, 995
MaeIII GTNAC 3 cut(s) 494, 514, 991
MalI GATC 1 cut(s) 368
MbiI CCGCTC 3 cut(s) 282, 486, 825
MboI GATC 1 cut(s) 366
MboII GAAGA 3 cut(s) 613, 661, 966
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 656, 774
MlsI TGGCCA 1 cut(s) 727
MluCI AATT 4 cut(s) 4, 409, 852, 1012
MluNI TGGCCA 1 cut(s) 727
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 727
MscI TGGCCA 1 cut(s) 727
MseI TTAA 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 727
MspA1I CMGCKG 1 cut(s) 609
MwoI GCNNNNNNNGC 7 cut(s) 81, 92, 144, 173, 206, 317, 320
NdeI CATATG 1 cut(s) 880
NdeII GATC 1 cut(s) 366
NlaIII CATG 4 cut(s) 84, 115, 959, 990
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 959
PciI ACATGT 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 5 cut(s) 50, 136, 324, 348, 411
PfeI GAWTC 2 cut(s) 688, 920
PflFI GACNNNGTC 1 cut(s) 947
PkrI GCNGC 6 cut(s) 313, 322, 383, 396, 965, 984
PleI GAGTC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 540
PscI ACATGT 1 cut(s) 955
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 656
Psp1406I AACGTT 1 cut(s) 995
PspFI CCCAGC 3 cut(s) 439, 665, 741
PspN4I GGNNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 366
PsyI GACNNNGTC 1 cut(s) 947
RsaI GTAC 2 cut(s) 888, 929
RsaNI GTAC 2 cut(s) 887, 928
SacI GAGCTC 1 cut(s) 656
SalI GTCGAC 2 cut(s) 350, 356
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 6 cut(s) 312, 321, 382, 395, 964, 983
Sau3AI GATC 1 cut(s) 366
SchI GAGTC 1 cut(s) 541
SduI GDGCHC 2 cut(s) 656, 774
SgrDI CGTCGACG 1 cut(s) 350
Sse9I AATT 4 cut(s) 4, 409, 852, 1012
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 656
TaaI ACNGT 2 cut(s) 190, 932
TaiI ACGT 3 cut(s) 357, 865, 998
TaqI TCGA 5 cut(s) 130, 252, 351, 357, 759
TasI AATT 4 cut(s) 4, 409, 852, 1012
TauI GCSGC 3 cut(s) 314, 323, 384
TfiI GAWTC 2 cut(s) 688, 920
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 3 cut(s) 394, 963, 982
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 3 cut(s) 17, 845, 912
TspGWI ACGGA 3 cut(s) 42, 337, 513
Tth111I GACNNNGTC 1 cut(s) 947
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 959
XmiI GTMKAC 2 cut(s) 351, 357
XspI CTAG 1 cut(s) 561
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.