Rh4AG145700

vesicle-mediated transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005704
Physical Location & Seq
Reverse (-)
36892899 .. 36897544
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG145700.1

Sequence Viewer

Length: 1290 bp
ATGAACTCCTCCGCCACCGCCACCGCCACCGCCCACTCGCTCGCTCCGTCGCCATTCCACCGCTTCCGCAACCCATGCGCTCCCAAAGCCTCCTTCTCCTGCTCCATGCCTCGCCCTCCCAATCGAAACCGCCGAAACCGCAGACGAAACTCCGACAGCGCCACCACCGCCACCTTCACCACCGTCCCCACCGCCAAGCCCGCCTTCTACACTTCCTCAGACCCTGAAAACATCCAAGCCACCTTCGACCTCAACAGCCTCTACCACTCCTCCCACTCCTACCTCCGCCACTTCCTCGCCTCCGCTGCCGACGCCGCCGACGACCTCCAGACCCTCGTCTCCGTCGACGTCGACCGGAGGATCGTCGTCTCCTGCCGCCCCTCCACGCTGCGATTCGTCGGCAATTTCGTCGTGTTGACCTGCGCCGTCGTGCTGGGGTTTAGGGTTCTGGTTGGGTTGGTGAGGTTAGGGTTTGGGAGCGGGTCGGGTTACGGAAGGGAGAAGGTGGTGACGAGGAGGGATAGGAGTCTTGGGGGGAAGGAGGTTGTGGTAGCTAGGATAGAGAAGCCAAGAGCAGAGGAGGTTAGTGTCAAGAAGAACAGCGGTTTGGGGATTTTGGATAATCCCCTATCGTCGGTGAGGAAGAGCTCAATGGTGGCTGGGATGGAGAGAGTGTTTAAGAATCGGGTTCGCTTCGGGGAGAAGCTTCCCCAATGGTGGCCAACTACAACGTCCCAGCCCATTTTAGGGGTTGATAATGAGGAGCACCAGAGAGAAGCAAATAGATTGGTTAGAGCAATCACCGACAATAGAATGAGCGGGAAGGACATTATGGAGGATGATATAATTCATTTACGTCAAATATGCAGGACATATGGAGTACGGGTCTCCTTTGATACTACAAATACACGGGATTCATTGTACCGTGTGTCTGTTGACTTTGTCTTCAATGTATGCAGCAGGACACCGAGTTACTCTAAAGGTGTTGAGATCGAGGGTGAAGATGCCCGGCAATTCATAGCTGGGCTAGCTGAGAACATTGGGCTTGAGAATGTTCGTGCTGGAAGAATTGTGTCTGCCGCCGTAGCTGCGCGTACACGTTCATGTTTTTTGCAGGCTTGGGCTTTAGTAATGCAAGCTAAACATGCAGAAGCCGTAGTAGAACTGTCAAAAATATGCCTTGTTTGGCGGATTTTCCCTCCCGAGGAATCTTCGGTATGTGCTCTGTTTATTCATGAAACAAATTTACCACAACAGATCAACAATTTTTTACTTAAGACATTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

47.7

Weight (kDa)

9.7

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 428
AccBSI CCGCTC 2 cut(s) 480, 819
AccI GTMKAC 2 cut(s) 345, 351
AccII CGCG 1 cut(s) 1093
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 1 cut(s) 1243
AcyI GRCGYC 2 cut(s) 312, 348
AfaI GTAC 3 cut(s) 882, 923, 1096
AfiI CCNNNNNNNGG 5 cut(s) 634, 717, 746, 747, 1204
AflII CTTAAG 1 cut(s) 1274
AflIII ACRYGT 1 cut(s) 1097
AgsI TTSAA 1 cut(s) 949
AjuI GAANNNNNNNTTGG 6 cut(s) 77, 109, 188, 220, 590, 622
AluBI AGCT 7 cut(s) 554, 648, 706, 1022, 1031, 1088, 1139
AluI AGCT 7 cut(s) 554, 648, 706, 1022, 1031, 1088, 1139
Alw21I GWGCWC 3 cut(s) 650, 768, 1225
Alw26I GTCTC 3 cut(s) 343, 373, 892
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 1202
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 4 cut(s) 305, 388, 957, 1088
ApoI RAATTY 1 cut(s) 1243
AspLEI GCGC 4 cut(s) 80, 161, 425, 1093
AsuC2I CCSGG 1 cut(s) 1009
AsuHPI GGTGA 6 cut(s) 169, 472, 520, 649, 793, 1010
AsuNHI GCTAGC 1 cut(s) 1027
AvaI CYCGRG 1 cut(s) 1202
BalI TGGCCA 1 cut(s) 721
BanII GRGCYC 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 3 cut(s) 650, 768, 1225
BbvI GCAGC 4 cut(s) 292, 375, 969, 1075
BccI CCATC 1 cut(s) 658
BceAI ACGGC 3 cut(s) 410, 1067, 1139
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BcnI CCSGG 1 cut(s) 1009
BcoDI GTCTC 3 cut(s) 343, 373, 892
BfaI CTAG 2 cut(s) 555, 1028
BfoI RGCGCY 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 1274
BfuAI ACCTGC 1 cut(s) 428
BisI GCNGC 7 cut(s) 306, 315, 376, 389, 958, 1080, 1089
BlsI GCNGC 7 cut(s) 307, 316, 377, 390, 959, 1081, 1090
Bme1390I CCNGG 1 cut(s) 1009
BmeT110I CYCGRG 1 cut(s) 1202
BmrFI CCNGG 1 cut(s) 1009
BmsI GCATC 1 cut(s) 994
BmtI GCTAGC 1 cut(s) 1031
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 937
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 1067
BpuMI CCSGG 1 cut(s) 1009
BsaHI GRCGYC 2 cut(s) 312, 348
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 1 cut(s) 1203
BsaWI WCCGGW 1 cut(s) 354
BsaXI ACNNNNNCTCC 6 cut(s) 254, 284, 659, 689, 870, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 634, 717, 746, 747, 1204
BseDI CCNNGG 1 cut(s) 1203
BseGI GGATG 3 cut(s) 231, 669, 844
BseLI CCNNNNNNNGG 5 cut(s) 634, 717, 746, 747, 1204
BseMII CTCAG 2 cut(s) 231, 1023
BseRI GAGGAG 4 cut(s) 259, 529, 593, 776
BseXI GCAGC 4 cut(s) 292, 375, 969, 1075
BseYI CCCAGC 4 cut(s) 433, 659, 735, 1022
Bsh1236I CGCG 1 cut(s) 1093
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 721
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 3 cut(s) 650, 768, 1225
BsiHKCI CYCGRG 1 cut(s) 1202
BsiSI CCGG 2 cut(s) 355, 1009
BslFI GGGAC 2 cut(s) 170, 718
BslI CCNNNNNNNGG 5 cut(s) 634, 717, 746, 747, 1204
BsmAI GTCTC 3 cut(s) 343, 373, 892
BsmBI CGTCTC 2 cut(s) 343, 373
BsmFI GGGAC 2 cut(s) 170, 718
BsnI GGCC 1 cut(s) 721
Bso31I GGTCTC 1 cut(s) 892
BsoBI CYCGRG 1 cut(s) 1202
Bsp1286I GDGCHC 3 cut(s) 650, 768, 1225
Bsp143I GATC 3 cut(s) 360, 990, 1257
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 2 cut(s) 230, 1024
BspFNI CGCG 1 cut(s) 1093
BspHI TCATGA 1 cut(s) 1234
BspMI ACCTGC 1 cut(s) 428
BspOI GCTAGC 1 cut(s) 1031
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 638
BspTI CTTAAG 1 cut(s) 1274
BspTNI GGTCTC 1 cut(s) 892
BsrBI CCGCTC 2 cut(s) 480, 819
BssECI CCNNGG 1 cut(s) 1203
BssMI GATC 3 cut(s) 360, 990, 1257
BssNI GRCGYC 2 cut(s) 312, 348
Bst4CI ACNGT 3 cut(s) 184, 926, 1167
Bst6I CTCTTC 1 cut(s) 638
BstACI GRCGYC 2 cut(s) 312, 348
BstAFI CTTAAG 1 cut(s) 1274
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 5 cut(s) 42, 201, 1029, 1116, 1137
BstDEI CTNAG 2 cut(s) 217, 1032
BstF5I GGATG 3 cut(s) 231, 669, 844
BstFNI CGCG 1 cut(s) 1093
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 4 cut(s) 80, 161, 425, 1093
BstKTI GATC 3 cut(s) 363, 993, 1260
BstMAI GTCTC 3 cut(s) 343, 373, 892
BstMBI GATC 3 cut(s) 360, 990, 1257
BstMCI CGRYCG 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 1148
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 1007
BstUI CGCG 1 cut(s) 1093
BstV1I GCAGC 4 cut(s) 292, 375, 969, 1075
BstV2I GAAGAC 1 cut(s) 937
BsuRI GGCC 1 cut(s) 721
BtsCI GGATG 3 cut(s) 231, 669, 844
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 5 cut(s) 42, 201, 1029, 1116, 1137
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 4 cut(s) 80, 161, 425, 1093
CseI GACGC 1 cut(s) 320
Csp6I GTAC 3 cut(s) 881, 922, 1095
CviAII CATG 5 cut(s) 75, 106, 1104, 1145, 1235
CviQI GTAC 3 cut(s) 881, 922, 1095
DdeI CTNAG 2 cut(s) 217, 1032
DpnI GATC 3 cut(s) 362, 992, 1259
DpnII GATC 3 cut(s) 360, 990, 1257
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
EciI GGCGGA 2 cut(s) 275, 1204
Ecl136II GAGCTC 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 650
Eco31I GGTCTC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 1202
EcoICRI GAGCTC 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 650
Esp3I CGTCTC 2 cut(s) 343, 373
FaeI CATG 5 cut(s) 78, 109, 1107, 1148, 1238
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 170, 718
FatI CATG 5 cut(s) 74, 105, 1103, 1144, 1234
FauI CCCGC 3 cut(s) 208, 473, 812
FauNDI CATATG 1 cut(s) 874
FblI GTMKAC 2 cut(s) 345, 351
Fnu4HI GCNGC 7 cut(s) 306, 315, 376, 389, 958, 1080, 1089
FokI GGATG 3 cut(s) 218, 676, 851
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 7 cut(s) 306, 315, 376, 389, 958, 1080, 1089
FspBI CTAG 2 cut(s) 555, 1028
GlaI GCGC 4 cut(s) 79, 160, 424, 1092
GluI GCNGC 7 cut(s) 306, 315, 376, 389, 958, 1080, 1089
GsaI CCCAGC 4 cut(s) 437, 663, 739, 1026
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 721
HapII CCGG 2 cut(s) 355, 1009
HgaI GACGC 1 cut(s) 320
HhaI GCGC 4 cut(s) 80, 161, 425, 1093
Hin1I GRCGYC 2 cut(s) 312, 348
Hin1II CATG 5 cut(s) 78, 109, 1107, 1148, 1238
Hin6I GCGC 4 cut(s) 78, 159, 423, 1091
HinP1I GCGC 4 cut(s) 78, 159, 423, 1091
HincII GTYRAC 4 cut(s) 346, 352, 417, 937
HindII GTYRAC 4 cut(s) 346, 352, 417, 937
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 5 cut(s) 393, 526, 682, 914, 1208
HpaII CCGG 2 cut(s) 355, 1009
HphI GGTGA 6 cut(s) 169, 472, 520, 649, 793, 1010
Hpy166II GTNNAC 5 cut(s) 346, 352, 417, 937, 1097
Hpy188I TCNGA 2 cut(s) 154, 220
Hpy188III TCNNGA 4 cut(s) 328, 592, 1202, 1235
Hpy8I GTNNAC 5 cut(s) 346, 352, 417, 937, 1097
HpyAV CCTTC 8 cut(s) 103, 184, 214, 253, 489, 496, 532, 817
HpyCH4III ACNGT 3 cut(s) 184, 926, 1167
HpyCH4IV ACGT 4 cut(s) 348, 731, 856, 1099
HpyCH4V TGCA 5 cut(s) 867, 957, 1114, 1135, 1148
HpyF3I CTNAG 2 cut(s) 217, 1032
HpySE526I ACGT 4 cut(s) 348, 731, 856, 1099
Hsp92I GRCGYC 2 cut(s) 312, 348
Hsp92II CATG 5 cut(s) 78, 109, 1107, 1148, 1238
HspAI GCGC 4 cut(s) 78, 159, 423, 1091
Kzo9I GATC 3 cut(s) 360, 990, 1257
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 5 cut(s) 49, 85, 107, 477, 763
Lsp1109I GCAGC 4 cut(s) 292, 375, 969, 1075
LweI GCATC 1 cut(s) 994
MaeI CTAG 2 cut(s) 555, 1028
MaeII ACGT 4 cut(s) 348, 731, 856, 1099
MaeIII GTNAC 3 cut(s) 488, 508, 971
MalI GATC 3 cut(s) 362, 992, 1259
MbiI CCGCTC 2 cut(s) 480, 819
MboI GATC 3 cut(s) 360, 990, 1257
MboII GAAGA 6 cut(s) 607, 655, 937, 1013, 1077, 1203
MhlI GDGCHC 3 cut(s) 650, 768, 1225
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 6 cut(s) 403, 846, 1013, 1068, 1243, 1264
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 721
MscI TGGCCA 1 cut(s) 721
MseI TTAA 2 cut(s) 678, 1275
MslI CAYNNNNRTG 1 cut(s) 1102
Msp20I TGGCCA 1 cut(s) 721
MspA1I CMGCKG 2 cut(s) 305, 603
MspCI CTTAAG 1 cut(s) 1274
MspI CCGG 2 cut(s) 355, 1009
MspR9I CCNGG 1 cut(s) 1009
MvnI CGCG 1 cut(s) 1093
NciI CCSGG 1 cut(s) 1009
NdeI CATATG 1 cut(s) 874
NdeII GATC 3 cut(s) 360, 990, 1257
NheI GCTAGC 1 cut(s) 1027
NlaIII CATG 5 cut(s) 78, 109, 1107, 1148, 1238
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 1148
PagI TCATGA 1 cut(s) 1234
PciSI GCTCTTC 1 cut(s) 638
PcsI WCGNNNNNNNCGW 5 cut(s) 44, 130, 318, 342, 405
PfeI GAWTC 4 cut(s) 393, 682, 914, 1208
PflFI GACNNNGTC 1 cut(s) 941
PkrI GCNGC 7 cut(s) 307, 316, 377, 390, 959, 1081, 1090
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
PshAI GACNNNNGTC 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 650
PspFI CCCAGC 4 cut(s) 433, 659, 735, 1022
PstNI CAGNNNCTG 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 3 cut(s) 882, 923, 1096
RsaNI GTAC 3 cut(s) 881, 922, 1095
RseI CAYNNNNRTG 1 cut(s) 1102
SacI GAGCTC 1 cut(s) 650
SalI GTCGAC 2 cut(s) 344, 350
SapI GCTCTTC 1 cut(s) 638
SaqAI TTAA 2 cut(s) 678, 1275
SatI GCNGC 7 cut(s) 306, 315, 376, 389, 958, 1080, 1089
Sau3AI GATC 3 cut(s) 360, 990, 1257
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 1009
SduI GDGCHC 3 cut(s) 650, 768, 1225
SfaNI GCATC 1 cut(s) 994
SgrDI CGTCGACG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 1102
SmlI CTYRAG 2 cut(s) 1046, 1274
SmoI CTYRAG 2 cut(s) 1046, 1274
Sse9I AATT 6 cut(s) 403, 846, 1013, 1068, 1243, 1264
SspMI CTAG 2 cut(s) 555, 1028
SstI GAGCTC 1 cut(s) 650
StyD4I CCNGG 1 cut(s) 1007
TaaI ACNGT 3 cut(s) 184, 926, 1167
TaiI ACGT 4 cut(s) 351, 734, 859, 1102
TaqI TCGA 5 cut(s) 124, 246, 345, 351, 993
TasI AATT 6 cut(s) 403, 846, 1013, 1068, 1243, 1264
TauI GCSGC 3 cut(s) 317, 378, 1082
TfiI GAWTC 4 cut(s) 393, 682, 914, 1208
Tru1I TTAA 2 cut(s) 678, 1275
Tru9I TTAA 2 cut(s) 678, 1275
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 4 cut(s) 305, 388, 957, 1088
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 7 cut(s) 17, 839, 906, 1006, 1092, 1223, 1251
TspGWI ACGGA 3 cut(s) 36, 331, 507
Tth111I GACNNNGTC 1 cut(s) 941
Vha464I CTTAAG 1 cut(s) 1274
XapI RAATTY 1 cut(s) 1243
XceI RCATGY 1 cut(s) 1148
XmiI GTMKAC 2 cut(s) 345, 351
XspI CTAG 2 cut(s) 555, 1028
ZraI GACGTC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.