Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005704

Physical Location & Seq

Genomic Coordinates Forward (+)

25731022 .. 25731637

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002116

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCGCTCCCAAAGCCTCCTTCTCCTGCTCCATGCCTCGCCTTACCAATCGAAATCTCTGAAAACTCATACGAAACTCCAACAGCGCCGCCACCACCACCGTCCCCACCGCCAAGCCACCTTCGACCTCAACAACCTCTACTACTCCTCCCACTCCTACCTCCGCCAATTCCTTGCCTCCGCCGCCGAAGTAGCCAATGACCTTCAGACCCTCGTCTCCGTCGACATTGACGGTAGGATCATTGTCTCCTACCGCCACTCCACGTTGCGATTTGGGTCGGGTTACGGAAGGGAGAAGGTGGTGATGAGGAGGGATAGGAGTCTTGGAGGGAAAGAGGTTGTGGTAGCGAGGATAGAGAAGCCAAGTGCAGAGGAGGTTAGAGTTAAGAAGAACAGGGGTTTGGGGATTTTGGATAATCACCTATCGTCGGTAAGGAAGAGCTCAATGGTGGCTGGGATGGAGAGAGTGTTTAAGAATCGGATTAGCTTCGGGGAGAAGCTTCCCCAATGGTGGCCAACTACAACTTCCGCAAGAGGAAAAAGAAGAGGAGAAGAGGAGAGAGGCGGGTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

22.01

Weight (kDa)

10.93

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43235
fragaria_vesca	FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340
malus_domestica	MD04G1038000.v1.1
prunus_persica	Prupe.1G187900_v2.0.a1 Prupe.1G187900_v2.0.a1
pyrus_communis	pycom04g03090
rosa_chinensis	RchiOBHm_Chr4g0407651
rosa_laevigata	RLG00000002116 RLG00000008704
rosa_multiflora	Rmu_sc0001743.1_g000005 Rmu_sc0001900.1_g000058 Rmu_sc0006439.1_g000002 Rmu_sc0011989.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352250
rosa_rugosa	Rorug02G0207700 Rorug04G0081100
rosa_samantha	Rh4AG145700 Rh4BG143400 Rh4BG241800 Rh4CG152300 Rh4DG139900
rosa_wichuraiana	Rw4G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	8 cut(s)	88, 109, 163, 180, 183, 253, 528, 564
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	427, 510
AjuI	GAANNNNNNNTTGG	5 cut(s)	35, 383, 415, 508, 540
AluBI	AGCT	3 cut(s)	441, 486, 499
AluI	AGCT	3 cut(s)	441, 486, 499
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	220, 250
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	6, 87
AsuHPI	GGTGA	2 cut(s)	313, 410
BalI	TGGCCA	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	443
BccI	CCATC	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	220, 250
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	2 cut(s)	88, 183
BlsI	GCNGC	2 cut(s)	89, 184
BoxI	GACNNNNGTC	1 cut(s)	212
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 242, 272, 452, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 510
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	427, 510
BseRI	GAGGAG	5 cut(s)	136, 322, 386, 561, 569
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	427, 510
BsmAI	GTCTC	2 cut(s)	220, 250
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	8 cut(s)	88, 109, 163, 180, 183, 253, 528, 564
BspANI	GGCC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	431
BssMI	GATC	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	101, 233
Bst6I	CTCTTC	3 cut(s)	431, 538, 546
BstF5I	GGATG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	6, 87
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	2 cut(s)	220, 250
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 182, 191
BstPAI	GACNNNNGTC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	462
CfoI	GCGC	2 cut(s)	6, 87
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	15, 116, 194, 361, 441, 452, 486, 499, 514
CviKI_1	RGCY	9 cut(s)	15, 116, 194, 361, 441, 452, 486, 499, 514
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	3 cut(s)	431, 538, 546
EarI	CTCTTC	3 cut(s)	431, 538, 546
EciI	GGCGGA	2 cut(s)	152, 169
Ecl136II	GAGCTC	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 69
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	31
FauI	CCCGC	1 cut(s)	557
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	88, 183
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	88, 183
GlaI	GCGC	2 cut(s)	5, 86
GluI	GCNGC	2 cut(s)	88, 183
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	514
HhaI	GCGC	2 cut(s)	6, 87
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	4, 85
HinP1I	GCGC	2 cut(s)	4, 85
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	319, 475
HphI	GGTGA	2 cut(s)	313, 410
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	60, 207, 480
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	224, 430
HpyAV	CCTTC	5 cut(s)	29, 130, 212, 282, 289
HpyCH4III	ACNGT	2 cut(s)	101, 233
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 182, 191
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	2 cut(s)	4, 85
Kzo9I	GATC	1 cut(s)	237
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	2 cut(s)	11, 33
LpnPI	CCDG	3 cut(s)	38, 379, 438
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	400, 448, 555, 563
MhlI	GDGCHC	1 cut(s)	443
MlsI	TGGCCA	1 cut(s)	514
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	514
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	514
MscI	TGGCCA	1 cut(s)	514
MseI	TTAA	2 cut(s)	384, 471
Msp20I	TGGCCA	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	12, 182, 191
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	89, 184
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PshAI	GACNNNNGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	443
SalI	GTCGAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	384, 471
SatI	GCNGC	2 cut(s)	88, 183
Sau3AI	GATC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	443
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	8 cut(s)	88, 109, 163, 180, 183, 253, 528, 564
SstI	GAGCTC	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	101, 233
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	50, 123, 222
TasI	AATT	1 cut(s)	167
TauI	GCSGC	2 cut(s)	90, 185
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	384, 471
Tru9I	TTAA	2 cut(s)	384, 471
TspGWI	ACGGA	2 cut(s)	208, 300
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.