Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011989.1

Orthogroup ID

OG0005704

Physical Location & Seq

Genomic Coordinates Reverse (-)

8476 .. 10623

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011989.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgcctactcagacctctctatgtggtaatctttatgaacagctcttacaattgggcccatcaaatttcaatcatcaaagacgaaactccaacagcaccaccaccaccgtccccaccgccaaacccgccttctacacttcttctgaccctgaaaacttccaagccaccttcaacctcaacagcctctaccactcctcccactcctacctctgccacttcctcgcctccgccgccgaagccgcggacaacctccagaccctcgtctccgtcgacgttgaccgcaggatagtcgtctcctaccgcccctcctctatgctattagtcggcaatttcgtcgtgttgacctgtgccgtcgtgctgggggagaaggtggtgacgaggagggacatgagtcttggagggaaagaggttgtggtagcgagaatagagaagccaagagcagaggaggttaaagtcaagaagaacaggggtttggcgattttggataatcacctatcgtcggtgaggaagagctcaatggtggctgggatggagagagcgtttaagaattgggttcgcttcggggagaaacttccccaatggtggccaactgcaacttccccaagagaaagaagaggaggagagaggtgggtggatatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.88

Weight (kDa)

9.63

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43235
fragaria_vesca	FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340 FvH4_4g11340
malus_domestica	MD04G1038000.v1.1
prunus_persica	Prupe.1G187900_v2.0.a1 Prupe.1G187900_v2.0.a1
pyrus_communis	pycom04g03090
rosa_chinensis	RchiOBHm_Chr4g0407651
rosa_laevigata	RLG00000002116 RLG00000008704
rosa_multiflora	Rmu_sc0001743.1_g000005 Rmu_sc0001900.1_g000058 Rmu_sc0006439.1_g000002 Rmu_sc0011989.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352250
rosa_rugosa	Rorug02G0207700 Rorug04G0081100
rosa_samantha	Rh4AG145700 Rh4BG143400 Rh4BG241800 Rh4CG152300 Rh4DG139900
rosa_wichuraiana	Rw4G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	242
AciI	CCGC	8 cut(s)	117, 126, 228, 231, 240, 242, 280, 301
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	499, 582
AgsI	TTSAA	2 cut(s)	70, 172
AjuI	GAANNNNNNNTTGG	6 cut(s)	113, 145, 455, 487, 580, 612
AluBI	AGCT	2 cut(s)	43, 513
AluI	AGCT	2 cut(s)	43, 513
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	2 cut(s)	268, 298
AoxI	GGCC	2 cut(s)	55, 584
ApaI	GGGCCC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	55, 56
AsuHPI	GGTGA	3 cut(s)	385, 482, 514
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	586
BanII	GRGCYC	2 cut(s)	59, 515
Bbv12I	GWGCWC	1 cut(s)	515
BccI	CCATC	2 cut(s)	67, 523
BceAI	ACGGC	1 cut(s)	335
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 316, 350
BcoDI	GTCTC	2 cut(s)	268, 298
BisI	GCNGC	2 cut(s)	231, 240
BlsI	GCNGC	2 cut(s)	232, 241
BmgT120I	GGNCC	2 cut(s)	55, 56
BmiI	GGNNCC	1 cut(s)	57
BoxI	GACNNNNGTC	2 cut(s)	260, 390
BpmI	CTGGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	240
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 209, 290, 320, 524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 582
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	499, 582
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	6 cut(s)	184, 298, 394, 458, 630, 633
BseSI	GKGCMC	1 cut(s)	59
BseYI	CCCAGC	2 cut(s)	358, 524
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	57, 586
BsiHKAI	GWGCWC	1 cut(s)	515
BslFI	GGGAC	2 cut(s)	95, 398
BslI	CCNNNNNNNGG	2 cut(s)	499, 582
BsmAI	GTCTC	2 cut(s)	268, 298
BsmBI	CGTCTC	2 cut(s)	268, 298
BsmFI	GGGAC	2 cut(s)	95, 398
BsnI	GGCC	2 cut(s)	57, 586
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	59, 515
BspACI	CCGC	8 cut(s)	117, 126, 228, 231, 240, 242, 280, 301
BspANI	GGCC	2 cut(s)	57, 586
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	503, 607
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	268, 298
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 230, 236, 239
BstPAI	GACNNNNGTC	2 cut(s)	260, 390
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	57, 586
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	55, 56
Cfr42I	CCGCGG	1 cut(s)	243
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	9 cut(s)	43, 57, 164, 183, 239, 433, 513, 524, 586
CviKI_1	RGCY	9 cut(s)	43, 57, 164, 183, 239, 433, 513, 524, 586
DdeI	CTNAG	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	503, 607
EarI	CTCTTC	2 cut(s)	503, 607
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	513
Eco24I	GRGCYC	2 cut(s)	59, 515
Eco53kI	GAGCTC	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	59, 515
Esp3I	CGTCTC	2 cut(s)	268, 298
FaeI	CATG	1 cut(s)	391
FaiI	YATR	4 cut(s)	22, 36, 314, 389
FaqI	GGGAC	2 cut(s)	95, 398
FatI	CATG	1 cut(s)	387
FauI	CCCGC	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	231, 240
FokI	GGATG	1 cut(s)	541
FriOI	GRGCYC	2 cut(s)	59, 515
Fsp4HI	GCNGC	2 cut(s)	231, 240
GluI	GCNGC	2 cut(s)	231, 240
GsaI	CCCAGC	2 cut(s)	362, 528
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	57, 586
Hin1II	CATG	1 cut(s)	391
HincII	GTYRAC	3 cut(s)	271, 277, 342
HindII	GTYRAC	3 cut(s)	271, 277, 342
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	3 cut(s)	385, 482, 514
Hpy166II	GTNNAC	3 cut(s)	271, 277, 342
Hpy188I	TCNGA	2 cut(s)	12, 145
Hpy188III	TCNNGA	2 cut(s)	253, 457
Hpy8I	GTNNAC	3 cut(s)	271, 277, 342
Hpy99I	CGWCG	5 cut(s)	272, 275, 338, 356, 502
HpyAV	CCTTC	3 cut(s)	139, 178, 361
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 230, 236, 239
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	503
LpnPI	CCDG	7 cut(s)	162, 266, 268, 344, 358, 451, 510
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	373
MboII	GAAGA	4 cut(s)	132, 472, 520, 624
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	59, 515
MlsI	TGGCCA	1 cut(s)	586
MluCI	AATT	4 cut(s)	50, 64, 328, 547
MluNI	TGGCCA	1 cut(s)	586
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	114
Mox20I	TGGCCA	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	3 cut(s)	450, 543, 640
Msp20I	TGGCCA	1 cut(s)	586
MspA1I	CMGCKG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	125, 230, 236, 239
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 330
PkrI	GCNGC	2 cut(s)	232, 241
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PshAI	GACNNNNGTC	2 cut(s)	260, 390
Psp124BI	GAGCTC	1 cut(s)	515
PspFI	CCCAGC	2 cut(s)	358, 524
PspN4I	GGNNCC	1 cut(s)	57
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	55, 56
PsrI	GAACNNNNNNTAC	2 cut(s)	30, 62
SacI	GAGCTC	1 cut(s)	515
SacII	CCGCGG	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	3 cut(s)	450, 543, 640
SatI	GCNGC	2 cut(s)	231, 240
Sau96I	GGNCC	2 cut(s)	55, 56
SchI	GAGTC	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	59, 515
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SgrDI	CGTCGACG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	50, 64, 328, 547
SsiI	CCGC	8 cut(s)	117, 126, 228, 231, 240, 242, 280, 301
SstI	GAGCTC	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	50, 64, 328, 547
TauI	GCSGC	2 cut(s)	233, 242
Tru1I	TTAA	3 cut(s)	450, 543, 640
Tru9I	TTAA	3 cut(s)	450, 543, 640
TseFI	GTSAC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	256
XapI	RAATTY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.