FvH4_4g16071

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
19975132 .. 19977314
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16071.t1

Sequence Viewer

Length: 1467 bp
ATGGCTCAACAGAAGGAACTGAGCAGTGTGACTGAGTGGAGAATAAAAATGGCAGATGGTTCATCTGAAGCTTTGGCTCAACAAACCGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGATCTTGAAAGTATGCGATTTCTTCAAGAACGCTTGGGATTTGGGACAAAATGACCCTAGGAAAGTGATTCATTGTTTGAAAGTAGGGATGGCACTCACTGTTGTTTCACTGTTTTATTATATGAGACCTTTGTATGAAGGTATGGGAGGAAATGCTATGTGGGCAGTCATGACTGTTGTGGTTGTCTTTGAAAACACAGTTGGGGCAACAATATGCAAATGTTTAAACAGAATTTGTGGAACCTTTATTGCTGGTTCCCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTTGAGCCTTTCATCAATGGGATTTCTGTATTTTTGTTAGCTTCTGCAGTTTCCTTCTCAAGATTTATACCATCAGTCAAAAAGCGATTTGATTATGGTGCGATGATCTTCATCCTCACATTCAGCTTAGTTACAGTGTCAGGTTACCGGGTGGATAAATTATTGGAGATGGCCAACAATAGAGTCTACACCATTATCATTGGAACTGCATTGTGCATTATGATAACCATGATTATTTGCCCCATTTGGGCTGGGGAGGAACTATATATGCTCATTACTCGAAACATGGACAAACTTGCCTATTCCTTAGATGGTTGTGTTGGAGAGTATTTCAATGACAGCGGAAGCTCTTCTGATGATGACAAGGAATCTGATAAGAAATTGCTTGGCTACAAATGTGTTTTAACCTCAAAAGCAACAGAAGAAGCCATGGCTAATTTTGCAAGGTGGGAGCCTGCACATGGCCGCTTCAACTTCAGACATCCATGGAAACAATACCTCAAAGTCGGAGCATCAATGCGTGCTTGTGCCTATTGCATCGATGCCCTTGATGGTTGTGTGAATTCCGAAAATGAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAGCATTGCTTTGAAAGTGAGCTCTGAGTCTTCAAGAGTCATAAAAGATCTTGCAAGGAGTATGAAGACAATGAAGAAATCATCTAATATAGATTATTTGGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAGGAGGACTTAAAATCTCTTCCTACTTTATTTATTAATCCGCAGCCACTACAAGGAGCCGACTGTCCTGAAAAAAAGAACACAGGAGCAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAGCTTCTTTACTCATTGAGATTACTACAAGGATTGAAGGCATGGTTAATGCAGTTGAAAAACTAGCTGAGATGGGTGTGTACAAGTCTGTTGCAGATGAGAAGAATCAAAACCAGCCAGTTAGTAAATCTAATGTACCAGATGAACATAAGCAAGAGGTGTGA

Protein Analysis

489

Amino Acids

54.13

Weight (kDa)

6.98

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 58 - 409 4.8e-150 Aluminium activated malate transporter
FUSC_2 PF13515 90 - 222 8.6e-11 Fusaric acid resistance protein-like
FUSC PF04632 97 - 234 4.8e-07 Fusaric acid resistance protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 627
AciI CCGC 3 cut(s) 783, 907, 1220
AcoI YGGCCR 2 cut(s) 612, 904
AcsI RAATTY 3 cut(s) 369, 440, 1003
AcuI CTGAAG 3 cut(s) 87, 137, 901
AfaI GTAC 2 cut(s) 1385, 1440
AfiI CCNNNNNNNGG 3 cut(s) 688, 902, 1232
AjnI CCWGG 1 cut(s) 1179
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 9 cut(s) 71, 104, 482, 567, 789, 1068, 1177, 1307, 1370
AluI AGCT 9 cut(s) 71, 104, 482, 567, 789, 1068, 1177, 1307, 1370
Alw21I GWGCWC 2 cut(s) 1070, 1179
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 2 cut(s) 612, 904
ApeKI GCWGC 2 cut(s) 1047, 1222
ApoI RAATTY 3 cut(s) 369, 440, 1003
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 790
AspA2I CCTAGG 1 cut(s) 194
AsuC2I CCSGG 2 cut(s) 88, 590
AvrII CCTAGG 1 cut(s) 194
BalI TGGCCA 1 cut(s) 614
BanII GRGCYC 2 cut(s) 1070, 1179
BbsI GAAGAC 2 cut(s) 1068, 1118
Bbv12I GWGCWC 2 cut(s) 1070, 1179
BbvI GCAGC 2 cut(s) 1059, 1234
BccI CCATC 7 cut(s) 50, 220, 520, 604, 746, 986, 1369
BciT130I CCWGG 1 cut(s) 1181
BcnI CCSGG 2 cut(s) 88, 590
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 2 cut(s) 195, 1367
BfmI CTRYAG 1 cut(s) 486
BglII AGATCT 1 cut(s) 1093
BisI GCNGC 3 cut(s) 907, 1048, 1223
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 3 cut(s) 908, 1049, 1224
Bme1390I CCNGG 3 cut(s) 88, 590, 1181
BmiI GGNNCC 5 cut(s) 379, 394, 894, 1020, 1237
BmrFI CCNGG 3 cut(s) 88, 590, 1181
BmsI GCATC 4 cut(s) 417, 962, 973, 987
BpiI GAAGAC 2 cut(s) 1068, 1118
BpmI CTGGAG 1 cut(s) 1163
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 2 cut(s) 88, 590
Bsa29I ATCGAT 1 cut(s) 981
BsaBI GATNNNNATC 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 194, 870, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 688, 902, 1232
Bse1I ACTGG 1 cut(s) 1421
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 1 cut(s) 1181
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 194, 870, 926
BseGI GGATG 4 cut(s) 231, 408, 552, 922
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 3 cut(s) 688, 902, 1232
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 5 cut(s) 11, 24, 1014, 1062, 1362
BseNI ACTGG 1 cut(s) 1421
BseXI GCAGC 2 cut(s) 1059, 1234
BseYI CCCAGC 1 cut(s) 692
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 2 cut(s) 614, 906
BshVI ATCGAT 1 cut(s) 981
BsiHKAI GWGCWC 2 cut(s) 1070, 1179
BsiSI CCGG 2 cut(s) 87, 589
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 688, 902, 1232
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 2 cut(s) 614, 906
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 1070, 1179
Bsp1407I TGTACA 1 cut(s) 1383
Bsp143I GATC 3 cut(s) 138, 546, 1093
Bsp19I CCATGG 2 cut(s) 870, 926
BspACI CCGC 3 cut(s) 783, 907, 1220
BspANI GGCC 2 cut(s) 614, 906
BspCNI CTCAG 5 cut(s) 12, 25, 1015, 1063, 1363
BspDI ATCGAT 1 cut(s) 981
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 5 cut(s) 379, 394, 894, 1020, 1237
BspMAI CTGCAG 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 796
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 1050
BsrGI TGTACA 1 cut(s) 1383
BsrI ACTGG 1 cut(s) 1421
BssECI CCNNGG 3 cut(s) 194, 870, 926
BssMI GATC 3 cut(s) 138, 546, 1093
BssT1I CCWWGG 3 cut(s) 194, 870, 926
Bst2UI CCWGG 1 cut(s) 1181
Bst4CI ACNGT 6 cut(s) 238, 249, 313, 337, 577, 1244
Bst6I CTCTTC 2 cut(s) 796, 1203
BstAUI TGTACA 1 cut(s) 1383
BstC8I GCNNGC 5 cut(s) 93, 97, 111, 897, 963
BstDEI CTNAG 7 cut(s) 20, 33, 568, 748, 1023, 1071, 1371
BstDSI CCRYGG 2 cut(s) 870, 926
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 4 cut(s) 231, 408, 552, 922
BstKTI GATC 3 cut(s) 141, 549, 1096
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 138, 546, 1093
BstMWI GCNNNNNNNGC 4 cut(s) 101, 110, 299, 881
BstNI CCWGG 1 cut(s) 1181
BstPI GGTNACC 1 cut(s) 584
BstSCI CCNGG 3 cut(s) 86, 588, 1179
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 1059, 1234
BstV2I GAAGAC 2 cut(s) 1068, 1118
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
Bsu15I ATCGAT 1 cut(s) 981
BsuRI GGCC 2 cut(s) 614, 906
BsuTUI ATCGAT 1 cut(s) 981
BtgI CCRYGG 2 cut(s) 870, 926
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 4 cut(s) 231, 408, 552, 922
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 4 cut(s) 31, 234, 245, 582
Cac8I GCNNGC 5 cut(s) 93, 97, 111, 897, 963
CciI TCATGA 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 981
Csp6I GTAC 2 cut(s) 1384, 1439
CviAII CATG 9 cut(s) 307, 670, 727, 871, 902, 927, 1279, 1288, 1345
CviQI GTAC 2 cut(s) 1384, 1439
DdeI CTNAG 7 cut(s) 20, 33, 568, 748, 1023, 1071, 1371
DpnI GATC 3 cut(s) 140, 548, 1095
DpnII GATC 3 cut(s) 138, 546, 1093
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 2 cut(s) 612, 904
Eam1104I CTCTTC 2 cut(s) 796, 1203
EarI CTCTTC 2 cut(s) 796, 1203
Ecl136II GAGCTC 2 cut(s) 1068, 1177
Eco130I CCWWGG 3 cut(s) 194, 870, 926
Eco24I GRGCYC 2 cut(s) 1070, 1179
Eco31I GGTCTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 1285
Eco53kI GAGCTC 2 cut(s) 1068, 1177
Eco57I CTGAAG 3 cut(s) 87, 137, 901
Eco91I GGTNACC 1 cut(s) 584
EcoICRI GAGCTC 2 cut(s) 1068, 1177
EcoO65I GGTNACC 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 1 cut(s) 1179
EcoRV GATATC 1 cut(s) 1285
EcoT14I CCWWGG 3 cut(s) 194, 870, 926
EcoT38I GRGCYC 2 cut(s) 1070, 1179
ErhI CCWWGG 3 cut(s) 194, 870, 926
FaeI CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
FaqI GGGAC 1 cut(s) 195
FatI CATG 9 cut(s) 306, 669, 726, 870, 901, 926, 1278, 1287, 1344
FauNDI CATATG 1 cut(s) 1041
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 3 cut(s) 907, 1048, 1223
FokI GGATG 4 cut(s) 238, 395, 539, 909
FriOI GRGCYC 2 cut(s) 1070, 1179
Fsp4HI GCNGC 3 cut(s) 907, 1048, 1223
FspBI CTAG 2 cut(s) 195, 1367
GluI GCNGC 3 cut(s) 907, 1048, 1223
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 1163
HaeIII GGCC 2 cut(s) 614, 906
HapII CCGG 2 cut(s) 87, 589
Hin1II CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 7 cut(s) 205, 424, 624, 809, 1073, 1083, 1408
HpaII CCGG 2 cut(s) 87, 589
Hpy166II GTNNAC 2 cut(s) 628, 1384
Hpy188I TCNGA 9 cut(s) 67, 117, 126, 796, 814, 920, 950, 1009, 1072
Hpy188III TCNNGA 8 cut(s) 142, 163, 307, 432, 501, 1022, 1080, 1247
Hpy8I GTNNAC 2 cut(s) 628, 1384
HpyAV CCTTC 5 cut(s) 7, 112, 269, 505, 1334
HpyCH4III ACNGT 6 cut(s) 238, 249, 313, 337, 577, 1244
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 110, 299, 881
HpyF3I CTNAG 7 cut(s) 20, 33, 568, 748, 1023, 1071, 1371
Hsp92II CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
Kzo9I GATC 3 cut(s) 138, 546, 1093
LguI GCTCTTC 1 cut(s) 796
LmnI GCTCC 6 cut(s) 892, 950, 1174, 1182, 1235, 1265
Lsp1109I GCAGC 2 cut(s) 1059, 1234
LweI GCATC 4 cut(s) 417, 962, 973, 987
MaeI CTAG 2 cut(s) 195, 1367
MaeIII GTNAC 4 cut(s) 28, 571, 584, 1297
MalI GATC 3 cut(s) 140, 548, 1095
MboI GATC 3 cut(s) 138, 546, 1093
MboII GAAGA 9 cut(s) 151, 541, 783, 875, 1068, 1123, 1132, 1190, 1417
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 2 cut(s) 1070, 1179
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 6 cut(s) 369, 440, 599, 821, 877, 1003
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 4 cut(s) 433, 633, 1082, 1092
MmeI TCCRAC 3 cut(s) 742, 928, 1129
MnlI CCTC 8 cut(s) 278, 566, 691, 859, 950, 1009, 1177, 1453
Mox20I TGGCCA 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 790
MscI TGGCCA 1 cut(s) 614
MseI TTAA 5 cut(s) 362, 845, 1190, 1215, 1350
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 783
MspI CCGG 2 cut(s) 87, 589
MspR9I CCNGG 3 cut(s) 88, 590, 1181
MssI GTTTAAAC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 1181
MwoI GCNNNNNNNGC 4 cut(s) 101, 110, 299, 881
NciI CCSGG 2 cut(s) 88, 590
NcoI CCATGG 2 cut(s) 870, 926
NdeI CATATG 1 cut(s) 1041
NdeII GATC 3 cut(s) 138, 546, 1093
NlaIII CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
NlaIV GGNNCC 5 cut(s) 379, 394, 894, 1020, 1237
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 28, 1297
PagI TCATGA 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 205, 809, 1408
PfoI TCCNGGA 1 cut(s) 1179
PkrI GCNGC 3 cut(s) 908, 1049, 1224
PleI GAGTC 4 cut(s) 432, 632, 1081, 1091
PmeI GTTTAAAC 1 cut(s) 363
PpsI GAGTC 4 cut(s) 432, 632, 1081, 1091
PshBI ATTAAT 1 cut(s) 1215
Psp124BI GAGCTC 2 cut(s) 1070, 1179
Psp6I CCWGG 1 cut(s) 1179
PspEI GGTNACC 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 1 cut(s) 1179
PspN4I GGNNCC 5 cut(s) 379, 394, 894, 1020, 1237
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 1093
RsaI GTAC 2 cut(s) 1385, 1440
RsaNI GTAC 2 cut(s) 1384, 1439
SacI GAGCTC 2 cut(s) 1070, 1179
SapI GCTCTTC 1 cut(s) 796
SaqAI TTAA 5 cut(s) 362, 845, 1190, 1215, 1350
SatI GCNGC 3 cut(s) 907, 1048, 1223
Sau3AI GATC 3 cut(s) 138, 546, 1093
SchI GAGTC 4 cut(s) 433, 633, 1082, 1092
ScrFI CCNGG 3 cut(s) 88, 590, 1181
SduI GDGCHC 2 cut(s) 1070, 1179
SfaNI GCATC 4 cut(s) 417, 962, 973, 987
SfcI CTRYAG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 6 cut(s) 369, 440, 599, 821, 877, 1003
SsiI CCGC 3 cut(s) 783, 907, 1220
SspMI CTAG 2 cut(s) 195, 1367
SstI GAGCTC 2 cut(s) 1070, 1179
StyD4I CCNGG 3 cut(s) 86, 588, 1179
StyI CCWWGG 3 cut(s) 194, 870, 926
TaaI ACNGT 6 cut(s) 238, 249, 313, 337, 577, 1244
TaqI TCGA 2 cut(s) 721, 981
TasI AATT 6 cut(s) 369, 440, 599, 821, 877, 1003
TatI WGTACW 1 cut(s) 1383
TauI GCSGC 1 cut(s) 909
TfiI GAWTC 3 cut(s) 205, 809, 1408
Tru1I TTAA 5 cut(s) 362, 845, 1190, 1215, 1350
Tru9I TTAA 5 cut(s) 362, 845, 1190, 1215, 1350
TscAI CASTG 4 cut(s) 31, 241, 252, 582
TseFI GTSAC 2 cut(s) 28, 1297
TseI GCWGC 2 cut(s) 1047, 1222
Tsp45I GTSAC 2 cut(s) 28, 1297
TspDTI ATGAA 9 cut(s) 51, 197, 288, 442, 541, 1124, 1133, 1172, 1461
TspRI CASTG 4 cut(s) 31, 241, 252, 582
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 3 cut(s) 369, 440, 1003
XmaJI CCTAGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 790
XspI CTAG 2 cut(s) 195, 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.