Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

73481 .. 75476

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

atggctcaagagaaggaaatgagcagggtgactgagtggaggataagaatggcagatggttcatctgaagctttggctccagaagccgggcttgcctgccgagcttggcttgctctgaagggtctgattatggggttggttctgaaagtgtgcaatttcttcaggaaagcttgggatttgggacaaaatgagcctaaaaaagtgattcattgcttgaaagtagggatggcactcactgttgtttcactgttttactacatgagacctttgtacgaaggtatgggaggaaatgctatgtgggcagttatgactgttgtggttgtctttgagaacacagtgggtgcaacaatatgtaaaagtttaaacagaatttgcggaacttttgtggctggctctcttgccattggcatccattggatagtgagtcaatcaggaaaagaattcgagcctttcatcaatgggatttcagtatttttgttagttaccttctcaagatttataccatcagtgaaaaagcgatttgattatggtgcaatgatcttcatcctcacattcagtttagttgcagtgtcgggttaccgggtggataaattattggaaatggcaaacaatagagtatacaccatcatcattgggactgcattatgcattatgataaccatgattatttaccccatttgggctggggaggaactctatatgctcatcacccgaaacatggacaaacttgcctattccttagatggttgtgttggagagtatttcaatgaaagcagaagctcttctgagggtgacaaggaatctgctaagaaattacttggctacaaatgtgttttaacctcaaaagcaacagaagaagccatggctaattttgcaagatgggagcctgcacatggccgcttcaacttcagacatccatggaaacaatacctcaaaatcggggcatcaatgcgcgcttgtgcttattgcattgacgcccttgatggttgcgtgaattccgaaaatgaggttcctgagttgataaagaagcatatgagcaacattgctttgaaagtaagctctgagtcttcaagagtcatcaaagagcttgcaaagactatgaagacaatgaagaaatcatctactatagattatttagttggagaaatgaacaatgcagtcttggagctccaagaggacttaaaatctcttcctactttatttattaatccgcagccactacaaggagctgactgtcctgaaaaaaagaacacgggagcagttgctctcatggatatcatgccacttgtgactttagtttctttactgattgagattgctacaaggattgaaggcttggttaatgcagttgaagaactagctgagatgggtgagtacaagtcagttgcagatgagaagaatcaaaaccagccagttagtaaaactaatgtaccagatgaacataaggaaggggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

485

Amino Acids

53.99

Weight (kDa)

7.47

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AccII	CGCG	1 cut(s)	954
AciI	CCGC	3 cut(s)	375, 898, 1211
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	3 cut(s)	369, 440, 994
AcuI	CTGAAG	4 cut(s)	87, 137, 145, 892
AcyI	GRCGYC	1 cut(s)	975
AfaI	GTAC	3 cut(s)	272, 1376, 1431
AfiI	CCNNNNNNNGG	5 cut(s)	86, 679, 718, 893, 1223
AgsI	TTSAA	7 cut(s)	217, 766, 904, 1051, 1071, 1331, 1352
AluBI	AGCT	9 cut(s)	71, 104, 170, 780, 1059, 1087, 1168, 1229, 1361
AluI	AGCT	9 cut(s)	71, 104, 170, 780, 1059, 1087, 1168, 1229, 1361
Alw21I	GWGCWC	1 cut(s)	1170
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	895
ApeKI	GCWGC	1 cut(s)	1213
ApoI	RAATTY	3 cut(s)	369, 440, 994
AseI	ATTAAT	1 cut(s)	1206
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	2 cut(s)	954, 956
AsuC2I	CCSGG	2 cut(s)	88, 581
AsuHPI	GGTGA	4 cut(s)	40, 700, 803, 1382
BaeI	ACNNNNGTAYC	2 cut(s)	1413, 1446
BanII	GRGCYC	1 cut(s)	1170
BbsI	GAAGAC	2 cut(s)	1059, 1109
Bbv12I	GWGCWC	1 cut(s)	1170
BbvI	GCAGC	1 cut(s)	1225
BccI	CCATC	8 cut(s)	50, 220, 511, 632, 737, 873, 977, 1360
BcnI	CCSGG	2 cut(s)	88, 581
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	1358
BfmI	CTRYAG	1 cut(s)	1125
BisI	GCNGC	2 cut(s)	898, 1214
BlsI	GCNGC	2 cut(s)	899, 1215
Bme1390I	CCNGG	2 cut(s)	88, 581
BmiI	GGNNCC	3 cut(s)	78, 885, 1011
BmrFI	CCNGG	2 cut(s)	88, 581
BmsI	GCATC	2 cut(s)	417, 953
BpiI	GAAGAC	2 cut(s)	1059, 1109
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	2 cut(s)	88, 581
BsaBI	GATNNNNATC	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	975
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	861, 917
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 679, 718, 893, 1223
Bse1I	ACTGG	1 cut(s)	1412
Bse3DI	GCAATG	3 cut(s)	208, 540, 1041
Bse8I	GATNNNNATC	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	861, 917
BseGI	GGATG	4 cut(s)	231, 408, 543, 913
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	5 cut(s)	86, 679, 718, 893, 1223
BseMI	GCAATG	3 cut(s)	208, 540, 1041
BseMII	CTCAG	5 cut(s)	24, 777, 1005, 1053, 1353
BseNI	ACTGG	1 cut(s)	1412
BsePI	GCGCGC	1 cut(s)	952
BseXI	GCAGC	1 cut(s)	1225
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	1 cut(s)	954
BshFI	GGCC	1 cut(s)	897
BsiHKAI	GWGCWC	1 cut(s)	1170
BsiSI	CCGG	2 cut(s)	87, 580
BslFI	GGGAC	2 cut(s)	195, 649
BslI	CCNNNNNNNGG	5 cut(s)	86, 679, 718, 893, 1223
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	195, 649
BsnI	GGCC	1 cut(s)	897
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	1170
Bsp143I	GATC	1 cut(s)	537
Bsp19I	CCATGG	2 cut(s)	861, 917
BspACI	CCGC	3 cut(s)	375, 898, 1211
BspANI	GGCC	1 cut(s)	897
BspCNI	CTCAG	5 cut(s)	25, 778, 1006, 1054, 1354
BspFNI	CGCG	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	78, 885, 1011
BspQI	GCTCTTC	1 cut(s)	787
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	3 cut(s)	208, 540, 1041
BsrI	ACTGG	1 cut(s)	1412
BssECI	CCNNGG	2 cut(s)	861, 917
BssHII	GCGCGC	1 cut(s)	952
BssMI	GATC	1 cut(s)	537
BssNAI	GTATAC	1 cut(s)	619
BssNI	GRCGYC	1 cut(s)	975
BssT1I	CCWWGG	2 cut(s)	861, 917
Bst1107I	GTATAC	1 cut(s)	619
Bst4CI	ACNGT	5 cut(s)	238, 249, 313, 337, 1235
Bst6I	CTCTTC	2 cut(s)	787, 1194
BstACI	GRCGYC	1 cut(s)	975
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 888, 954, 1089
BstDEI	CTNAG	7 cut(s)	33, 739, 786, 807, 1014, 1062, 1362
BstDSI	CCRYGG	2 cut(s)	861, 917
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	4 cut(s)	231, 408, 543, 913
BstFNI	CGCG	1 cut(s)	954
BstHHI	GCGC	2 cut(s)	954, 956
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 872
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	86, 579
BstSFI	CTRYAG	1 cut(s)	1125
BstUI	CGCG	1 cut(s)	954
BstV1I	GCAGC	1 cut(s)	1225
BstV2I	GAAGAC	2 cut(s)	1059, 1109
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	897
BtgI	CCRYGG	2 cut(s)	861, 917
BtsCI	GGATG	4 cut(s)	231, 408, 543, 913
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	5 cut(s)	234, 245, 342, 513, 573
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 888, 954, 1089
CfoI	GCGC	2 cut(s)	954, 956
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	271, 1375, 1430
CviAII	CATG	8 cut(s)	259, 661, 718, 862, 893, 918, 1270, 1279
CviQI	GTAC	3 cut(s)	271, 1375, 1430
DdeI	CTNAG	7 cut(s)	33, 739, 786, 807, 1014, 1062, 1362
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	787, 1194
EarI	CTCTTC	2 cut(s)	787, 1194
Ecl136II	GAGCTC	1 cut(s)	1168
Eco130I	CCWWGG	2 cut(s)	861, 917
Eco24I	GRGCYC	1 cut(s)	1170
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	1276
Eco53kI	GAGCTC	1 cut(s)	1168
Eco57I	CTGAAG	4 cut(s)	87, 137, 145, 892
Eco91I	GGTNACC	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	1168
EcoO65I	GGTNACC	1 cut(s)	575
EcoRI	GAATTC	2 cut(s)	440, 994
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	2 cut(s)	861, 917
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	1170
ErhI	CCWWGG	2 cut(s)	861, 917
FaeI	CATG	8 cut(s)	262, 664, 721, 865, 896, 921, 1273, 1282
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	195, 649
FatI	CATG	8 cut(s)	258, 660, 717, 861, 892, 917, 1269, 1278
FauNDI	CATATG	1 cut(s)	1032
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	898, 1214
FokI	GGATG	4 cut(s)	238, 395, 530, 900
FriOI	GRGCYC	1 cut(s)	1170
Fsp4HI	GCNGC	2 cut(s)	898, 1214
FspBI	CTAG	1 cut(s)	1358
GlaI	GCGC	2 cut(s)	953, 955
GluI	GCNGC	2 cut(s)	898, 1214
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	897
HapII	CCGG	2 cut(s)	87, 580
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	2 cut(s)	954, 956
Hin1I	GRCGYC	1 cut(s)	975
Hin1II	CATG	8 cut(s)	262, 664, 721, 865, 896, 921, 1273, 1282
Hin6I	GCGC	2 cut(s)	952, 954
HinP1I	GCGC	2 cut(s)	952, 954
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	6 cut(s)	205, 424, 800, 1064, 1074, 1399
HpaII	CCGG	2 cut(s)	87, 580
HphI	GGTGA	4 cut(s)	40, 700, 803, 1382
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	8 cut(s)	67, 117, 126, 144, 787, 911, 1000, 1063
Hpy188III	TCNNGA	8 cut(s)	8, 80, 163, 432, 492, 1013, 1071, 1238
Hpy8I	GTNNAC	1 cut(s)	619
HpyAV	CCTTC	6 cut(s)	7, 112, 269, 496, 1325, 1442
HpyCH4III	ACNGT	5 cut(s)	238, 249, 313, 337, 1235
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 872
HpyF3I	CTNAG	7 cut(s)	33, 739, 786, 807, 1014, 1062, 1362
Hsp92I	GRCGYC	1 cut(s)	975
Hsp92II	CATG	8 cut(s)	262, 664, 721, 865, 896, 921, 1273, 1282
HspAI	GCGC	2 cut(s)	952, 954
Kzo9I	GATC	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	787
LmnI	GCTCC	6 cut(s)	82, 883, 1165, 1173, 1226, 1256
Lsp1109I	GCAGC	1 cut(s)	1225
LweI	GCATC	2 cut(s)	417, 953
MaeI	CTAG	1 cut(s)	1358
MaeIII	GTNAC	5 cut(s)	28, 481, 575, 791, 1288
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	1170
MluCI	AATT	7 cut(s)	154, 369, 440, 590, 812, 868, 994
MlyI	GAGTC	3 cut(s)	433, 1073, 1083
MmeI	TCCRAC	2 cut(s)	733, 1120
MnlI	CCTC	9 cut(s)	33, 278, 557, 682, 781, 850, 941, 1000, 1168
Mph1103I	ATGCAT	1 cut(s)	650
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	5 cut(s)	362, 836, 1181, 1206, 1341
MspI	CCGG	2 cut(s)	87, 580
MspR9I	CCNGG	2 cut(s)	88, 581
MssI	GTTTAAAC	1 cut(s)	363
MvnI	CGCG	1 cut(s)	954
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 872
NciI	CCSGG	2 cut(s)	88, 581
NcoI	CCATGG	2 cut(s)	861, 917
NdeI	CATATG	1 cut(s)	1032
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	8 cut(s)	262, 664, 721, 865, 896, 921, 1273, 1282
NlaIV	GGNNCC	3 cut(s)	78, 885, 1011
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 791, 1288
NsiI	ATGCAT	1 cut(s)	650
PauI	GCGCGC	1 cut(s)	952
PciSI	GCTCTTC	1 cut(s)	787
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	205, 800, 1399
PkrI	GCNGC	2 cut(s)	899, 1215
PleI	GAGTC	3 cut(s)	432, 1072, 1082
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	3 cut(s)	432, 1072, 1082
PshBI	ATTAAT	1 cut(s)	1206
Psp124BI	GAGCTC	1 cut(s)	1170
PspEI	GGTNACC	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	78, 885, 1011
PteI	GCGCGC	1 cut(s)	952
RsaI	GTAC	3 cut(s)	272, 1376, 1431
RsaNI	GTAC	3 cut(s)	271, 1375, 1430
SacI	GAGCTC	1 cut(s)	1170
SapI	GCTCTTC	1 cut(s)	787
SaqAI	TTAA	5 cut(s)	362, 836, 1181, 1206, 1341
SatI	GCNGC	2 cut(s)	898, 1214
Sau3AI	GATC	1 cut(s)	537
SchI	GAGTC	3 cut(s)	433, 1073, 1083
ScrFI	CCNGG	2 cut(s)	88, 581
SduI	GDGCHC	1 cut(s)	1170
SfaNI	GCATC	2 cut(s)	417, 953
SfcI	CTRYAG	1 cut(s)	1125
SmlI	CTYRAG	2 cut(s)	6, 490
SmoI	CTYRAG	2 cut(s)	6, 490
Sse9I	AATT	7 cut(s)	154, 369, 440, 590, 812, 868, 994
SsiI	CCGC	3 cut(s)	375, 898, 1211
SspMI	CTAG	1 cut(s)	1358
SstI	GAGCTC	1 cut(s)	1170
StyD4I	CCNGG	2 cut(s)	86, 579
StyI	CCWWGG	2 cut(s)	861, 917
TaaI	ACNGT	5 cut(s)	238, 249, 313, 337, 1235
TaqI	TCGA	1 cut(s)	444
TasI	AATT	7 cut(s)	154, 369, 440, 590, 812, 868, 994
TatI	WGTACW	1 cut(s)	1374
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	3 cut(s)	205, 800, 1399
Tru1I	TTAA	5 cut(s)	362, 836, 1181, 1206, 1341
Tru9I	TTAA	5 cut(s)	362, 836, 1181, 1206, 1341
TscAI	CASTG	5 cut(s)	241, 252, 342, 513, 573
TseFI	GTSAC	3 cut(s)	28, 791, 1288
TseI	GCWGC	1 cut(s)	1213
Tsp45I	GTSAC	3 cut(s)	28, 791, 1288
TspDTI	ATGAA	9 cut(s)	51, 197, 442, 532, 783, 1115, 1124, 1163, 1452
TspRI	CASTG	5 cut(s)	241, 252, 342, 513, 573
VspI	ATTAAT	1 cut(s)	1206
XapI	RAATTY	3 cut(s)	369, 440, 994
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	1 cut(s)	1358
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.