Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8404289.1

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 1295

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8404289.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 997 bp

atgcgtttctttattatttcagcttctgcagttaccttctcaagatttataccatcagtgaaaaagcgatttgattatggtgcaatgatcttcatcctcacattcagtttagttgcagtgtcgggttaccgggtggataaattattggaaatggcaaacaatagagtatacaccatcatcattgggactgcattatgcattatgataaccatgattatttaccccatttgggctggggaggaactctatatgctcatcacccgaaacatggacaaacttgcctattccttagatggttgtgttggagagtatttcaatgaaagcagaagctcttctgagggtgacaaggaatctgctaagaaattacttggctacaaatgtgttttaacctcaaaagcaacagaagaagccatggctaattttgcaagatgggagcctgcacatggccgcttcaacttcagacatccatggaaacaatacctcaaaatcggggcatcaatgcgcgcttgtgcttattgcattgacgcccttgatggttgcgtgaattccgaaaatgaggttcctgagttgataaagaagcatatgagcaacattgctttgaaagtaagctctgagtcttcaagagtcatcaaagagcttgcaaagactatgaagacaatgaagaaatcatctactatagattatttagttggagaaatgaacaatgcagtcttggagctccaagaggacttaaaatctcttcctactttatttattaatccgcagccactacaaggagctgactgtcctgaaaaaaagaacacgggagcagttgctctcatggatatcatgccacttgtgactttagtttctttactgattgagattgctacaaggattgaaggcttggttaatgcagttgaagaactagctgagatgggtgagtacaagtcagttgcagatgagaagaatcaaaaccagccagttagtaaaactaatgtaccagatgaacataagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

332

Amino Acids

37.19

Weight (kDa)

6.48

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	504
AciI	CCGC	2 cut(s)	448, 761
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	926, 981
AfiI	CCNNNNNNNGG	4 cut(s)	229, 268, 443, 773
AgsI	TTSAA	6 cut(s)	316, 454, 601, 621, 881, 902
AluBI	AGCT	7 cut(s)	23, 330, 609, 637, 718, 779, 911
AluI	AGCT	7 cut(s)	23, 330, 609, 637, 718, 779, 911
Alw21I	GWGCWC	1 cut(s)	720
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	1 cut(s)	544
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	504, 506
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	250, 353, 932
BaeI	ACNNNNGTAYC	2 cut(s)	963, 996
BanII	GRGCYC	1 cut(s)	720
BbsI	GAAGAC	2 cut(s)	609, 659
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	6 cut(s)	61, 182, 287, 423, 527, 910
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	908
BfmI	CTRYAG	2 cut(s)	27, 675
BisI	GCNGC	2 cut(s)	448, 764
BlsI	GCNGC	2 cut(s)	449, 765
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	435, 561
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	609, 659
BpuEI	CTTGAG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	411, 467
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 268, 443, 773
Bse1I	ACTGG	1 cut(s)	962
Bse3DI	GCAATG	2 cut(s)	90, 591
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	411, 467
BseGI	GGATG	2 cut(s)	93, 463
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	4 cut(s)	229, 268, 443, 773
BseMI	GCAATG	2 cut(s)	90, 591
BseMII	CTCAG	4 cut(s)	327, 555, 603, 903
BseNI	ACTGG	1 cut(s)	962
BsePI	GCGCGC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	229, 268, 443, 773
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	1 cut(s)	87
Bsp19I	CCATGG	2 cut(s)	411, 467
BspACI	CCGC	2 cut(s)	448, 761
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	4 cut(s)	328, 556, 604, 904
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	435, 561
BspMAI	CTGCAG	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	337
BsrDI	GCAATG	2 cut(s)	90, 591
BsrI	ACTGG	1 cut(s)	962
BssECI	CCNNGG	2 cut(s)	411, 467
BssHII	GCGCGC	1 cut(s)	502
BssMI	GATC	1 cut(s)	87
BssNAI	GTATAC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	411, 467
Bst1107I	GTATAC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	2 cut(s)	337, 744
BstACI	GRCGYC	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	438, 504, 639
BstDEI	CTNAG	6 cut(s)	289, 336, 357, 564, 612, 912
BstDSI	CCRYGG	2 cut(s)	411, 467
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	93, 463
BstFNI	CGCG	1 cut(s)	504
BstHHI	GCGC	2 cut(s)	504, 506
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	2 cut(s)	27, 675
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	2 cut(s)	609, 659
BstZ17I	GTATAC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	2 cut(s)	411, 467
BtsCI	GGATG	2 cut(s)	93, 463
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	63, 123
Cac8I	GCNNGC	3 cut(s)	438, 504, 639
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	2 cut(s)	504, 506
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	925, 980
CviAII	CATG	7 cut(s)	211, 268, 412, 443, 468, 820, 829
CviQI	GTAC	2 cut(s)	925, 980
DdeI	CTNAG	6 cut(s)	289, 336, 357, 564, 612, 912
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	337, 744
EarI	CTCTTC	2 cut(s)	337, 744
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	411, 467
Eco24I	GRGCYC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	826
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	826
EcoT14I	CCWWGG	2 cut(s)	411, 467
EcoT22I	ATGCAT	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	411, 467
FaeI	CATG	7 cut(s)	214, 271, 415, 446, 471, 823, 832
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	7 cut(s)	210, 267, 411, 442, 467, 819, 828
FauNDI	CATATG	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	448, 764
FokI	GGATG	2 cut(s)	80, 450
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	2 cut(s)	448, 764
FspBI	CTAG	1 cut(s)	908
GlaI	GCGC	2 cut(s)	503, 505
GluI	GCNGC	2 cut(s)	448, 764
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	2 cut(s)	504, 506
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	7 cut(s)	214, 271, 415, 446, 471, 823, 832
Hin6I	GCGC	2 cut(s)	502, 504
HinP1I	GCGC	2 cut(s)	502, 504
HinfI	GANTC	4 cut(s)	350, 614, 624, 949
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	3 cut(s)	250, 353, 932
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	337, 461, 550, 613
Hpy188III	TCNNGA	4 cut(s)	42, 563, 621, 788
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	46, 875
HpyCH4III	ACNGT	1 cut(s)	785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	6 cut(s)	289, 336, 357, 564, 612, 912
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	7 cut(s)	214, 271, 415, 446, 471, 823, 832
HspAI	GCGC	2 cut(s)	502, 504
Kzo9I	GATC	1 cut(s)	87
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	5 cut(s)	433, 715, 723, 776, 806
LpnPI	CCDG	7 cut(s)	143, 219, 450, 576, 801, 971, 975
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	1 cut(s)	908
MaeIII	GTNAC	4 cut(s)	31, 125, 341, 838
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	9 cut(s)	82, 324, 416, 609, 664, 673, 731, 914, 958
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	4 cut(s)	140, 362, 418, 544
MlyI	GAGTC	2 cut(s)	623, 633
MmeI	TCCRAC	2 cut(s)	283, 670
MnlI	CCTC	7 cut(s)	107, 232, 331, 400, 491, 550, 718
Mph1103I	ATGCAT	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	4 cut(s)	386, 731, 756, 891
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	2 cut(s)	411, 467
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	7 cut(s)	214, 271, 415, 446, 471, 823, 832
NlaIV	GGNNCC	2 cut(s)	435, 561
NmuCI	GTSAC	2 cut(s)	341, 838
NsiI	ATGCAT	1 cut(s)	200
PauI	GCGCGC	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	350, 949
PkrI	GCNGC	2 cut(s)	449, 765
PleI	GAGTC	2 cut(s)	622, 632
PpsI	GAGTC	2 cut(s)	622, 632
PshBI	ATTAAT	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	435, 561
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	26
PteI	GCGCGC	1 cut(s)	502
RsaI	GTAC	2 cut(s)	926, 981
RsaNI	GTAC	2 cut(s)	925, 980
SacI	GAGCTC	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	386, 731, 756, 891
SatI	GCNGC	2 cut(s)	448, 764
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	623, 633
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	2 cut(s)	27, 675
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	4 cut(s)	140, 362, 418, 544
SsiI	CCGC	2 cut(s)	448, 761
SspMI	CTAG	1 cut(s)	908
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	411, 467
TaaI	ACNGT	1 cut(s)	785
TasI	AATT	4 cut(s)	140, 362, 418, 544
TatI	WGTACW	1 cut(s)	924
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	2 cut(s)	350, 949
Tru1I	TTAA	4 cut(s)	386, 731, 756, 891
Tru9I	TTAA	4 cut(s)	386, 731, 756, 891
TscAI	CASTG	2 cut(s)	63, 123
TseFI	GTSAC	2 cut(s)	341, 838
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	2 cut(s)	341, 838
TspDTI	ATGAA	5 cut(s)	82, 333, 665, 674, 713
TspRI	CASTG	2 cut(s)	63, 123
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	908
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.