Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

61210986 .. 61212971

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGGTGACTGAGTGGAGGATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCCGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGGTTCTGAAAGTGTGCAATTTCTTCAGGAAAGCTTGGGATTTGGGACAAAATGAGCCTAAAAAAGTGATTCATTGCTTGAAAGTAGGGATGGCACTCACTGTTGTTTCACTGTTTTACTACATGAGACCTTTGTACGAAGGTGCAACAATATGTAAAAGTTTAAACAGAATTTGCGGAACTTTTGTGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTTGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGCTACTGCAGTTACCTTCTCAAGATTTATACCATCAGTGAAAAAGCGATTTGATTATGGTGCAATGATCTTCATCCTCACATTCAGTTTAGTTGCAGTGTCGGGTTACCGGGTGGATAAATTATTGGAAATGGCAAACAATAGAGTATACACCATCATCATTGGGACTTCATTATGCGTTATGATAACCATGATTATTTGCCCCATTTGGGCTGGGGAGGAACTCTATATGCTCATCACCCGAAACATGGACAAACTTGCCTATTCCTTAGATGGTTGTGTTGGAGAGTATTTCAATGAAAGCGGAAGCTCTTCTGATGGTGACAAGGATTCTGATAAGAAATTACTTGGCTACAAATGTGTTTTAACCTCAAAAGCAACAGAAGAAGCCATGGCTAATTTTGCAAGATGGGAGCCTGCACATGGCCGCTTCAACTTCAGACATCCATGGAAACAATACCTCAAAATCGGGGCATCAATGCGTGCTTGTGCTTATTGCATTGACGCCCTTGATGGTTGCATGAATTCCGAAAATGAGAAAGATATCATCAATGATTATCTAGCTTCAACTACTTCATCTGGTCAACAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAACATTGCTTTGAAAGTAAGCTCTGAGTCTTCAAGAGTCATCAAAGAGCTTGCAAAGACTATGAAGACAATGAAGAAATCATCTACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTACTTTATTTATTAATCCGCAGCCACTACAAGGAGCTGACTGTCCTGAAAAAAAGAACACGGGAGCAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAGTTTCTTTACTGATTGAGATTGCTACAAGGATTGAAGGAATGGTCAATGCAGTTGAAGAACTAGCTGAGATGGGTGAGTACAAGTCAGTTGCAGATGAGAAGAATCAAAACCAGCCAGTTAGCAAAACTAATGTACCAGATGAACATAAGGAAGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

484

Amino Acids

53.84

Weight (kDa)

6.38

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 93	7.7e-10	Aluminium activated malate transporter
ALMT	PF11744	93 - 405	1.3e-108	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	4 cut(s)	312, 720, 844, 1208
AcoI	YGGCCR	1 cut(s)	841
AcsI	RAATTY	3 cut(s)	306, 377, 940
AcuI	CTGAAG	4 cut(s)	87, 137, 145, 838
AcyI	GRCGYC	1 cut(s)	921
AfaI	GTAC	3 cut(s)	272, 1373, 1428
AfiI	CCNNNNNNNGG	5 cut(s)	86, 625, 664, 839, 1220
AgsI	TTSAA	8 cut(s)	217, 712, 850, 984, 1048, 1068, 1328, 1349
Alw21I	GWGCWC	1 cut(s)	1167
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	841
ApeKI	GCWGC	1 cut(s)	1210
ApoI	RAATTY	3 cut(s)	306, 377, 940
AseI	ATTAAT	1 cut(s)	1203
Asp700I	GAANNNNTTC	1 cut(s)	727
AsuC2I	CCSGG	2 cut(s)	88, 527
AsuHPI	GGTGA	4 cut(s)	40, 646, 749, 1379
BaeI	ACNNNNGTAYC	2 cut(s)	1410, 1443
BanII	GRGCYC	1 cut(s)	1167
BbsI	GAAGAC	2 cut(s)	1056, 1106
Bbv12I	GWGCWC	1 cut(s)	1167
BbvI	GCAGC	1 cut(s)	1222
BccI	CCATC	9 cut(s)	50, 220, 457, 578, 683, 728, 819, 923, 1357
BcnI	CCSGG	2 cut(s)	88, 527
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	977, 1355
BfmI	CTRYAG	2 cut(s)	423, 1122
BisI	GCNGC	2 cut(s)	844, 1211
BlsI	GCNGC	2 cut(s)	845, 1212
Bme1390I	CCNGG	2 cut(s)	88, 527
BmiI	GGNNCC	3 cut(s)	78, 831, 1008
BmrFI	CCNGG	2 cut(s)	88, 527
BmsI	GCATC	2 cut(s)	354, 899
BpiI	GAAGAC	2 cut(s)	1056, 1106
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	2 cut(s)	88, 527
BsaBI	GATNNNNATC	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	807, 863
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 625, 664, 839, 1220
Bse1I	ACTGG	1 cut(s)	1409
Bse3DI	GCAATG	3 cut(s)	208, 486, 1038
Bse8I	GATNNNNATC	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	807, 863
BseGI	GGATG	4 cut(s)	231, 345, 489, 859
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	5 cut(s)	86, 625, 664, 839, 1220
BseMI	GCAATG	3 cut(s)	208, 486, 1038
BseMII	CTCAG	4 cut(s)	24, 1002, 1050, 1350
BseNI	ACTGG	1 cut(s)	1409
BseXI	GCAGC	1 cut(s)	1222
BseYI	CCCAGC	1 cut(s)	629
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	1167
BsiSI	CCGG	2 cut(s)	87, 526
BslFI	GGGAC	2 cut(s)	195, 595
BslI	CCNNNNNNNGG	5 cut(s)	86, 625, 664, 839, 1220
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	195, 595
BsnI	GGCC	1 cut(s)	843
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	1167
Bsp143I	GATC	1 cut(s)	483
Bsp19I	CCATGG	2 cut(s)	807, 863
BspACI	CCGC	4 cut(s)	312, 720, 844, 1208
BspANI	GGCC	1 cut(s)	843
BspCNI	CTCAG	4 cut(s)	25, 1003, 1051, 1351
BspLI	GGNNCC	3 cut(s)	78, 831, 1008
BspMAI	CTGCAG	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	733
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	3 cut(s)	208, 486, 1038
BsrI	ACTGG	1 cut(s)	1409
BssECI	CCNNGG	2 cut(s)	807, 863
BssMI	GATC	1 cut(s)	483
BssNAI	GTATAC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	921
BssT1I	CCWWGG	2 cut(s)	807, 863
Bst1107I	GTATAC	1 cut(s)	565
Bst4CI	ACNGT	3 cut(s)	238, 249, 1232
Bst6I	CTCTTC	3 cut(s)	733, 1191, 1440
BstACI	GRCGYC	1 cut(s)	921
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 328, 834, 900, 1086
BstDEI	CTNAG	5 cut(s)	33, 685, 1011, 1059, 1359
BstDSI	CCRYGG	2 cut(s)	807, 863
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	231, 345, 489, 859
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 92, 101, 110, 818
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	86, 525
BstSFI	CTRYAG	2 cut(s)	423, 1122
BstV1I	GCAGC	1 cut(s)	1222
BstV2I	GAAGAC	2 cut(s)	1056, 1106
BstZ17I	GTATAC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	843
BtgI	CCRYGG	2 cut(s)	807, 863
BtsCI	GGATG	4 cut(s)	231, 345, 489, 859
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	234, 245, 459, 519
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 328, 834, 900, 1086
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	3 cut(s)	271, 1372, 1427
CviAII	CATG	9 cut(s)	259, 607, 664, 808, 839, 864, 937, 1267, 1276
CviQI	GTAC	3 cut(s)	271, 1372, 1427
DdeI	CTNAG	5 cut(s)	33, 685, 1011, 1059, 1359
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
DraI	TTTAAA	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	841
Eam1104I	CTCTTC	3 cut(s)	733, 1191, 1440
EarI	CTCTTC	3 cut(s)	733, 1191, 1440
Ecl136II	GAGCTC	1 cut(s)	1165
Eco130I	CCWWGG	2 cut(s)	807, 863
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	2 cut(s)	961, 1273
Eco53kI	GAGCTC	1 cut(s)	1165
Eco57I	CTGAAG	4 cut(s)	87, 137, 145, 838
Eco91I	GGTNACC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	1165
EcoO65I	GGTNACC	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	940
EcoRV	GATATC	2 cut(s)	961, 1273
EcoT14I	CCWWGG	2 cut(s)	807, 863
EcoT38I	GRGCYC	1 cut(s)	1167
ErhI	CCWWGG	2 cut(s)	807, 863
FaeI	CATG	9 cut(s)	262, 610, 667, 811, 842, 867, 940, 1270, 1279
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	195, 595
FatI	CATG	9 cut(s)	258, 606, 663, 807, 838, 863, 936, 1266, 1275
FauNDI	CATATG	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	844, 1211
FokI	GGATG	4 cut(s)	238, 332, 476, 846
FriOI	GRGCYC	1 cut(s)	1167
Fsp4HI	GCNGC	2 cut(s)	844, 1211
FspBI	CTAG	2 cut(s)	977, 1355
GluI	GCNGC	2 cut(s)	844, 1211
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	843
HapII	CCGG	2 cut(s)	87, 526
HgaI	GACGC	1 cut(s)	929
Hin1I	GRCGYC	1 cut(s)	921
Hin1II	CATG	9 cut(s)	262, 610, 667, 811, 842, 867, 940, 1270, 1279
HincII	GTYRAC	1 cut(s)	1001
HindII	GTYRAC	1 cut(s)	1001
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	6 cut(s)	205, 361, 746, 1061, 1071, 1396
HpaII	CCGG	2 cut(s)	87, 526
HphI	GGTGA	4 cut(s)	40, 646, 749, 1379
Hpy166II	GTNNAC	2 cut(s)	565, 1001
Hpy188I	TCNGA	9 cut(s)	67, 117, 126, 144, 733, 751, 857, 946, 1060
Hpy188III	TCNNGA	8 cut(s)	8, 80, 163, 369, 438, 1010, 1068, 1235
Hpy8I	GTNNAC	2 cut(s)	565, 1001
HpyAV	CCTTC	5 cut(s)	7, 112, 269, 442, 1322
HpyCH4III	ACNGT	3 cut(s)	238, 249, 1232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 92, 101, 110, 818
HpyF3I	CTNAG	5 cut(s)	33, 685, 1011, 1059, 1359
Hsp92I	GRCGYC	1 cut(s)	921
Hsp92II	CATG	9 cut(s)	262, 610, 667, 811, 842, 867, 940, 1270, 1279
Kzo9I	GATC	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	733
LmnI	GCTCC	6 cut(s)	82, 829, 1162, 1170, 1223, 1253
Lsp1109I	GCAGC	1 cut(s)	1222
LweI	GCATC	2 cut(s)	354, 899
MaeI	CTAG	2 cut(s)	977, 1355
MaeIII	GTNAC	5 cut(s)	28, 427, 521, 737, 1285
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	1167
MluCI	AATT	7 cut(s)	154, 306, 377, 536, 758, 814, 940
MlyI	GAGTC	3 cut(s)	370, 1070, 1080
MmeI	TCCRAC	2 cut(s)	679, 1117
MnlI	CCTC	7 cut(s)	33, 503, 628, 796, 887, 1165, 1441
MroXI	GAANNNNTTC	1 cut(s)	727
MseI	TTAA	4 cut(s)	299, 782, 1178, 1203
MspI	CCGG	2 cut(s)	87, 526
MspR9I	CCNGG	2 cut(s)	88, 527
MssI	GTTTAAAC	1 cut(s)	300
MwoI	GCNNNNNNNGC	5 cut(s)	83, 92, 101, 110, 818
NciI	CCSGG	2 cut(s)	88, 527
NcoI	CCATGG	2 cut(s)	807, 863
NdeI	CATATG	1 cut(s)	1029
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	9 cut(s)	262, 610, 667, 811, 842, 867, 940, 1270, 1279
NlaIV	GGNNCC	3 cut(s)	78, 831, 1008
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 737, 1285
PciSI	GCTCTTC	1 cut(s)	733
PdmI	GAANNNNTTC	1 cut(s)	727
PfeI	GAWTC	3 cut(s)	205, 746, 1396
PkrI	GCNGC	2 cut(s)	845, 1212
PleI	GAGTC	3 cut(s)	369, 1069, 1079
PmeI	GTTTAAAC	1 cut(s)	300
PpsI	GAGTC	3 cut(s)	369, 1069, 1079
PshBI	ATTAAT	1 cut(s)	1203
Psp124BI	GAGCTC	1 cut(s)	1167
PspEI	GGTNACC	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	629
PspN4I	GGNNCC	3 cut(s)	78, 831, 1008
PstI	CTGCAG	1 cut(s)	427
RsaI	GTAC	3 cut(s)	272, 1373, 1428
RsaNI	GTAC	3 cut(s)	271, 1372, 1427
SacI	GAGCTC	1 cut(s)	1167
SapI	GCTCTTC	1 cut(s)	733
SaqAI	TTAA	4 cut(s)	299, 782, 1178, 1203
SatI	GCNGC	2 cut(s)	844, 1211
Sau3AI	GATC	1 cut(s)	483
SchI	GAGTC	3 cut(s)	370, 1070, 1080
ScrFI	CCNGG	2 cut(s)	88, 527
SduI	GDGCHC	1 cut(s)	1167
SfaNI	GCATC	2 cut(s)	354, 899
SfcI	CTRYAG	2 cut(s)	423, 1122
SmlI	CTYRAG	2 cut(s)	6, 436
SmoI	CTYRAG	2 cut(s)	6, 436
Sse9I	AATT	7 cut(s)	154, 306, 377, 536, 758, 814, 940
SsiI	CCGC	4 cut(s)	312, 720, 844, 1208
SspMI	CTAG	2 cut(s)	977, 1355
SstI	GAGCTC	1 cut(s)	1167
StyD4I	CCNGG	2 cut(s)	86, 525
StyI	CCWWGG	2 cut(s)	807, 863
TaaI	ACNGT	3 cut(s)	238, 249, 1232
TasI	AATT	7 cut(s)	154, 306, 377, 536, 758, 814, 940
TatI	WGTACW	1 cut(s)	1371
TauI	GCSGC	1 cut(s)	846
TfiI	GAWTC	3 cut(s)	205, 746, 1396
Tru1I	TTAA	4 cut(s)	299, 782, 1178, 1203
Tru9I	TTAA	4 cut(s)	299, 782, 1178, 1203
TscAI	CASTG	4 cut(s)	241, 252, 459, 519
TseFI	GTSAC	3 cut(s)	28, 737, 1285
TseI	GCWGC	1 cut(s)	1210
Tsp45I	GTSAC	3 cut(s)	28, 737, 1285
TspRI	CASTG	4 cut(s)	241, 252, 459, 519
VspI	ATTAAT	1 cut(s)	1203
XapI	RAATTY	3 cut(s)	306, 377, 940
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	727
XspI	CTAG	2 cut(s)	977, 1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.