Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Forward (+)

364169 .. 366121

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000080.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atggtgaatgaaaaggatgtgccagagaatttggagtggagtatcaacgtgactgatgggacaaaacaagtggtagcagttccagaactgaggctagttaataaggtgtggctaggatcgaagtctgtagttggaggtttgatattgaaagtttggaggtttttagtgaaggcatggaatttaggagttgctgagcctaaaaaggttattcatgctgtcaaagttgggttggctcttactattgtgtcactttgttactatataaggtctttgtatgaaggtgttggagggaatgctatgtgggcagttatgacagttgtagtagtttttgaatcttccgtagcttcagcagcaaccttttctcgatttatcccatctgtcaaatcccgattcgattatggtgctctcatattcatcctcaccttcagcttagtttcagtttctgggtatcgtgtggacggaatatctgagttggctttccaaagactgtccaccattttcattgggacctctttttgcattctgattagcattcttttctatcccacctgggctggtgctgagcttcaccgtttgatctataggaaccttgagaagctggctgattccttggatggatacgttatcgagtactttgactatgaagctgtggctgaagactccaatcatactaaggcaatgaaagggtacaagtatgtgcttgattcaaaggcgaccgaagacaatttggcaaaatttgcaagatgggagcctgcacacggctgtttcaacttccaacatccatggaaacaatacctaaagattggggcatcaattcgtagttctgcatattgcattgaggctctgagtggttgcatggattcagaaattcaggcaccgggaattgggtaccttaagaagcatgtaagcaatgcctgcaagacaatgaacaaattttcttcagatatcttaagagaactggcaataacactaaaaaccatgacaaagtcatctcagatgggttcattggttcgggaaatgaacattgcagtgcagcaacttcaaatttctttgagatctatacctaactgcctcattgctccaacatcagaagatactactgatgaacccttcagaaaaatctgcataacaccactagtggaggtcattccactgaccacttttgtgtctttgttaatagaaaatgcagcaagaatcaatgagattgttgatgcagtcaatgagctagcaggcatggttgatatgaagcatgggaactcaaaagcaaaaccaacacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

426

Amino Acids

47.33

Weight (kDa)

8.28

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	2 cut(s)	874, 888
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	6 cut(s)	28, 178, 734, 867, 932, 1044
AcuI	CTGAAG	5 cut(s)	330, 409, 675, 924, 1096
AfaI	GTAC	3 cut(s)	632, 689, 890
AfiI	CCNNNNNNNGG	2 cut(s)	758, 884
AflII	CTTAAG	2 cut(s)	893, 949
AgsI	TTSAA	5 cut(s)	148, 332, 708, 769, 1043
AhlI	ACTAGT	1 cut(s)	1135
AjnI	CCWGG	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	1163
AluBI	AGCT	6 cut(s)	344, 429, 565, 598, 647, 1225
AluI	AGCT	6 cut(s)	344, 429, 565, 598, 647, 1225
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	350, 1033, 1187
ApoI	RAATTY	6 cut(s)	28, 178, 734, 867, 932, 1044
Asp718I	GGTACC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	879
AsuHPI	GGTGA	3 cut(s)	16, 412, 560
AsuNHI	GCTAGC	1 cut(s)	1225
AvaII	GGWCC	1 cut(s)	507
BanI	GGYRCC	2 cut(s)	874, 888
BbsI	GAAGAC	2 cut(s)	663, 726
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	362, 1045, 1199
BccI	CCATC	5 cut(s)	50, 382, 608, 738, 991
BceAI	ACGGC	1 cut(s)	775
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	1 cut(s)	550
BciVI	GTATCC	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	879
BcuI	ACTAGT	1 cut(s)	1135
BfaI	CTAG	4 cut(s)	95, 113, 1136, 1226
BfmI	CTRYAG	2 cut(s)	126, 580
BfrI	CTTAAG	2 cut(s)	893, 949
BfuI	GTATCC	1 cut(s)	611
BglII	AGATCT	1 cut(s)	1055
BisI	GCNGC	3 cut(s)	351, 1034, 1188
BlpI	GCTNAGC	2 cut(s)	192, 561
BlsI	GCNGC	3 cut(s)	352, 1035, 1189
BmcAI	AGTACT	1 cut(s)	632
Bme1390I	CCNGG	2 cut(s)	550, 879
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	5 cut(s)	508, 587, 750, 876, 890
BmrFI	CCNGG	2 cut(s)	550, 879
BmsI	GCATC	2 cut(s)	818, 1201
BmtI	GCTAGC	1 cut(s)	1229
BpiI	GAAGAC	2 cut(s)	663, 726
Bpu1102I	GCTNAGC	2 cut(s)	192, 561
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	879
BsaJI	CCNNGG	3 cut(s)	549, 609, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	758, 884
Bse1I	ACTGG	1 cut(s)	963
Bse3DI	GCAATG	4 cut(s)	684, 916, 1023, 1074
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	3 cut(s)	549, 609, 782
BseGI	GGATG	4 cut(s)	22, 414, 619, 778
BseLI	CCNNNNNNNGG	2 cut(s)	758, 884
BseMI	GCAATG	4 cut(s)	684, 916, 1023, 1074
BseMII	CTCAG	6 cut(s)	80, 183, 459, 552, 836, 1007
BseNI	ACTGG	1 cut(s)	963
BseXI	GCAGC	3 cut(s)	362, 1045, 1199
BsgI	GTGCAG	2 cut(s)	738, 1052
Bsh1285I	CGRYCG	1 cut(s)	717
BshNI	GGYRCC	2 cut(s)	874, 888
BsiEI	CGRYCG	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	878
BslFI	GGGAC	2 cut(s)	73, 520
BslI	CCNNNNNNNGG	2 cut(s)	758, 884
BsmFI	GGGAC	2 cut(s)	73, 520
BsmI	GAATGC	3 cut(s)	298, 519, 531
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	116, 576, 1055
Bsp1720I	GCTNAGC	2 cut(s)	192, 561
Bsp19I	CCATGG	1 cut(s)	782
BspCNI	CTCAG	6 cut(s)	81, 184, 460, 553, 837, 1006
BspLI	GGNNCC	5 cut(s)	508, 587, 750, 876, 890
BspOI	GCTAGC	1 cut(s)	1229
BspPI	GGATC	1 cut(s)	124
BspT107I	GGYRCC	2 cut(s)	874, 888
BspTI	CTTAAG	2 cut(s)	893, 949
BsrDI	GCAATG	4 cut(s)	684, 916, 1023, 1074
BsrI	ACTGG	1 cut(s)	963
BssECI	CCNNGG	3 cut(s)	549, 609, 782
BssMI	GATC	3 cut(s)	116, 576, 1055
BssT1I	CCWWGG	2 cut(s)	609, 782
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	4 cut(s)	316, 489, 572, 1278
BstAFI	CTTAAG	2 cut(s)	893, 949
BstAPI	GCANNNNNTGC	2 cut(s)	737, 915
BstC8I	GCNNGC	5 cut(s)	600, 753, 916, 1227, 1231
BstDEI	CTNAG	8 cut(s)	89, 192, 430, 468, 561, 672, 845, 993
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	4 cut(s)	22, 414, 619, 778
BstKTI	GATC	3 cut(s)	119, 579, 1058
BstMBI	GATC	3 cut(s)	116, 576, 1055
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 350, 737, 915
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	2 cut(s)	548, 877
BstSFI	CTRYAG	2 cut(s)	126, 580
BstV1I	GCAGC	3 cut(s)	362, 1045, 1199
BstV2I	GAAGAC	2 cut(s)	663, 726
BstX2I	RGATCY	1 cut(s)	1055
BstYI	RGATCY	1 cut(s)	1055
BsuI	GTATCC	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	4 cut(s)	22, 414, 619, 778
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	2 cut(s)	1035, 1151
Cac8I	GCNNGC	5 cut(s)	600, 753, 916, 1227, 1231
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	507
Csp6I	GTAC	3 cut(s)	631, 688, 889
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	8 cut(s)	174, 212, 783, 856, 902, 979, 1234, 1250
CviQI	GTAC	3 cut(s)	631, 688, 889
DdeI	CTNAG	8 cut(s)	89, 192, 430, 468, 561, 672, 845, 993
DpnI	GATC	3 cut(s)	118, 578, 1057
DpnII	GATC	3 cut(s)	116, 576, 1055
Eco130I	CCWWGG	2 cut(s)	609, 782
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	1 cut(s)	507
Eco57I	CTGAAG	5 cut(s)	330, 409, 675, 924, 1096
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	946
EcoT14I	CCWWGG	2 cut(s)	609, 782
ErhI	CCWWGG	2 cut(s)	609, 782
FaeI	CATG	8 cut(s)	177, 215, 786, 859, 905, 982, 1237, 1253
FaqI	GGGAC	2 cut(s)	73, 520
FatI	CATG	8 cut(s)	173, 211, 782, 855, 901, 978, 1233, 1249
Fnu4HI	GCNGC	3 cut(s)	351, 1034, 1188
FokI	GGATG	4 cut(s)	29, 401, 626, 765
Fsp4HI	GCNGC	3 cut(s)	351, 1034, 1188
FspBI	CTAG	4 cut(s)	95, 113, 1136, 1226
GluI	GCNGC	3 cut(s)	351, 1034, 1188
HapII	CCGG	1 cut(s)	878
Hin1II	CATG	8 cut(s)	177, 215, 786, 859, 905, 982, 1237, 1253
HinfI	GANTC	7 cut(s)	332, 390, 605, 659, 704, 860, 1194
HpaII	CCGG	1 cut(s)	878
HphI	GGTGA	3 cut(s)	16, 412, 560
Hpy166II	GTNNAC	2 cut(s)	457, 492
Hpy188I	TCNGA	8 cut(s)	469, 525, 846, 865, 943, 996, 1090, 1115
Hpy188III	TCNNGA	4 cut(s)	83, 363, 387, 1013
Hpy8I	GTNNAC	2 cut(s)	457, 492
HpyAV	CCTTC	4 cut(s)	163, 272, 433, 1120
HpyCH4III	ACNGT	4 cut(s)	316, 489, 572, 1278
HpyCH4IV	ACGT	2 cut(s)	48, 621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 350, 737, 915
HpyF3I	CTNAG	8 cut(s)	89, 192, 430, 468, 561, 672, 845, 993
HpySE526I	ACGT	2 cut(s)	48, 621
Hsp92II	CATG	8 cut(s)	177, 215, 786, 859, 905, 982, 1237, 1253
KpnI	GGTACC	1 cut(s)	892
Kzo9I	GATC	3 cut(s)	116, 576, 1055
LmnI	GCTCC	2 cut(s)	748, 1084
Lsp1109I	GCAGC	3 cut(s)	362, 1045, 1199
LweI	GCATC	2 cut(s)	818, 1201
MaeI	CTAG	4 cut(s)	95, 113, 1136, 1226
MaeII	ACGT	2 cut(s)	48, 621
MaeIII	GTNAC	3 cut(s)	49, 246, 254
MalI	GATC	3 cut(s)	118, 578, 1057
MboI	GATC	3 cut(s)	116, 576, 1055
MboII	GAAGA	5 cut(s)	327, 668, 731, 930, 1103
MflI	RGATCY	1 cut(s)	1055
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	9 cut(s)	28, 178, 724, 734, 813, 867, 882, 932, 1044
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	4 cut(s)	112, 265, 799, 1106
MnlI	CCTC	9 cut(s)	84, 128, 150, 281, 428, 520, 832, 1082, 1135
MseI	TTAA	4 cut(s)	99, 894, 950, 1175
MslI	CAYNNNNRTG	2 cut(s)	1028, 1163
MspCI	CTTAAG	2 cut(s)	893, 949
MspI	CCGG	1 cut(s)	878
MspR9I	CCNGG	2 cut(s)	550, 879
Mva1269I	GAATGC	3 cut(s)	298, 519, 531
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	4 cut(s)	302, 350, 737, 915
NciI	CCSGG	1 cut(s)	879
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	116, 576, 1055
NheI	GCTAGC	1 cut(s)	1225
NlaIII	CATG	8 cut(s)	177, 215, 786, 859, 905, 982, 1237, 1253
NlaIV	GGNNCC	5 cut(s)	508, 587, 750, 876, 890
NmuCI	GTSAC	2 cut(s)	49, 246
NspI	RCATGY	1 cut(s)	905
OliI	CACNNNNGTG	1 cut(s)	1163
PctI	GAATGC	3 cut(s)	298, 519, 531
PfeI	GAWTC	6 cut(s)	332, 390, 605, 704, 860, 1194
PflFI	GACNNNGTC	1 cut(s)	985
PkrI	GCNGC	3 cut(s)	352, 1035, 1189
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	5 cut(s)	508, 587, 750, 876, 890
PspPI	GGNCC	1 cut(s)	507
PspPPI	RGGWCCY	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	1055
PsyI	GACNNNGTC	1 cut(s)	985
RsaI	GTAC	3 cut(s)	632, 689, 890
RsaNI	GTAC	3 cut(s)	631, 688, 889
RseI	CAYNNNNRTG	2 cut(s)	1028, 1163
SaqAI	TTAA	4 cut(s)	99, 894, 950, 1175
SatI	GCNGC	3 cut(s)	351, 1034, 1188
Sau3AI	GATC	3 cut(s)	116, 576, 1055
Sau96I	GGNCC	1 cut(s)	507
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	550, 879
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	818, 1201
SfcI	CTRYAG	2 cut(s)	126, 580
SinI	GGWCC	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	1028, 1163
SmlI	CTYRAG	3 cut(s)	590, 893, 949
SmoI	CTYRAG	3 cut(s)	590, 893, 949
SpeI	ACTAGT	1 cut(s)	1135
Sse9I	AATT	9 cut(s)	28, 178, 724, 734, 813, 867, 882, 932, 1044
SspMI	CTAG	4 cut(s)	95, 113, 1136, 1226
StyD4I	CCNGG	2 cut(s)	548, 877
StyI	CCWWGG	2 cut(s)	609, 782
TaaI	ACNGT	4 cut(s)	316, 489, 572, 1278
TaiI	ACGT	2 cut(s)	51, 624
TaqI	TCGA	4 cut(s)	119, 364, 393, 627
TaqII	GACCGA	1 cut(s)	731
TasI	AATT	9 cut(s)	28, 178, 724, 734, 813, 867, 882, 932, 1044
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	6 cut(s)	332, 390, 605, 704, 860, 1194
Tru1I	TTAA	4 cut(s)	99, 894, 950, 1175
Tru9I	TTAA	4 cut(s)	99, 894, 950, 1175
TscAI	CASTG	2 cut(s)	1035, 1158
TseFI	GTSAC	2 cut(s)	49, 246
TseI	GCWGC	3 cut(s)	350, 1033, 1187
Tsp45I	GTSAC	2 cut(s)	49, 246
TspGWI	ACGGA	2 cut(s)	328, 474
TspRI	CASTG	2 cut(s)	1035, 1158
Tth111I	GACNNNGTC	1 cut(s)	985
Vha464I	CTTAAG	2 cut(s)	893, 949
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	6 cut(s)	28, 178, 734, 867, 932, 1044
XceI	RCATGY	1 cut(s)	905
XspI	CTAG	4 cut(s)	95, 113, 1136, 1226
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.