Rorug06G0475100

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
59753328 .. 59756236
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0475100.1

Sequence Viewer

Length: 1080 bp
ATGTCAAAACGGCACAGAAAAAGAGAGAGAGAGAGAGAAACGGAAACCCCCCCCACAGAAAAAGCAGCCGCAGCAGCAATCATGGCGGATCTGTACGGAACGCCGCCGGACTCGGAAGAAATCTCCAACATTCTCAGCCACCTCCTCCACGGCGGCTCCTCCTCTTCCTGCGGGGCGCCCCTCAAGCCCGCCACTTACATGCACCTACTCAACTCCTCCTCAGTGCCGCCGCCGCCGCACGAGCATCCTCAATTGTTGCCCCGATCGGCGGACCGGTCCGACTCCGACCGCCCCTCTGACTTCAACTTCTCCGATTCCGGCGGCGGGTATTTCATGGACTCCGACGCCAACACTTCAAAGAAGGGGAGGAGAGTTCCGTCGGAGAATGATCTCGGTGACGTCAGCTGTGACAGTGAGGGTCCTGAAGCGCCGGAGGTTCCATTAAACCCAGCTCCGCCGCGTAGTTCGTCCAAGAGAAGCAGAGCGGCGGAGGTCCATAACTTGTCGGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAAATGAAAGCTTTGCAGAACCTGATTCCAAATTCTAACAAGACGGATAAGGCTTCGATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATGTTAACGATGAGAAATGGACTGGGTTTGCATCCCATGTGCTTACCAGGAATGATGCAGCCTGTGCAGTTTCCTCATATGGCATTGGGCTTTGACGAAGGAAGTGACAAAGTTCCAAAGTCTAGCAGAGGAATGAGCCCATTTTTTGGTAGTGAAGAAAACTCAATGCAATCAGCTTATAATATTTCCAGTGGATGCACAATCTTGAATCAGCCAATGGTCGTACCCTCAGCTGCAAATGTCCCTGCTTTGGAAGCCTCATTCGTCTTTGAACCATCGACTCAAGCTTACTACAGACCCTTCTTTGCTGCCACATCTTCTAAGGAACTATTATTCGGTGAAGGTGAGCCGTCCTCAAAATCAGATTCCAATCGGACTGGGATAAACTCTTCATCAGATGCTGATAAGGTGTCCTCAAAGAGACCTGATGTATGA

Protein Analysis

359

Amino Acids

39.09

Weight (kDa)

6.17

Isoelectric Point (pI)

78.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 164 - 211 5.1e-14 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 170 - 215 4.8e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AatII GACGTC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 791
AccBSI CCGCTC 1 cut(s) 485
AccII CGCG 1 cut(s) 460
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 3 cut(s) 176, 345, 399
AfaI GTAC 3 cut(s) 95, 642, 870
AfiI CCNNNNNNNGG 4 cut(s) 268, 324, 791, 895
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 6 cut(s) 304, 357, 622, 638, 853, 917
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 8 cut(s) 405, 452, 548, 628, 634, 821, 878, 932
AluI AGCT 8 cut(s) 405, 452, 548, 628, 634, 821, 878, 932
Alw26I GTCTC 1 cut(s) 1060
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 2 cut(s) 559, 1046
ApeKI GCWGC 7 cut(s) 65, 71, 74, 625, 703, 878, 953
ApoI RAATTY 1 cut(s) 568
AseI ATTAAT 1 cut(s) 531
AsiGI ACCGGT 1 cut(s) 273
AspLEI GCGC 2 cut(s) 178, 430
AspS9I GGNCC 4 cut(s) 271, 276, 419, 493
AsuHPI GGTGA 3 cut(s) 407, 995, 1001
AvaII GGWCC 4 cut(s) 271, 276, 419, 493
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 785
BauI CACGAG 1 cut(s) 239
BbvCI CCTCAGC 1 cut(s) 874
BbvI GCAGC 7 cut(s) 77, 83, 86, 637, 715, 865, 940
BccI CCATC 1 cut(s) 928
BceAI ACGGC 3 cut(s) 26, 166, 979
BciT130I CCWGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 1060
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 1 cut(s) 937
BfoI RGCGCY 2 cut(s) 179, 431
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 4 cut(s) 271, 276, 419, 493
BmgT120I GGNCC 4 cut(s) 271, 276, 419, 493
BmiI GGNNCC 4 cut(s) 157, 177, 420, 438
BmrFI CCNGG 1 cut(s) 693
BmrI ACTGGG 2 cut(s) 677, 1032
BmsI GCATC 6 cut(s) 253, 585, 685, 690, 830, 1033
BmuI ACTGGG 2 cut(s) 677, 1032
BplI GAGNNNNNCTC 2 cut(s) 983, 1015
BpmI CTGGAG 1 cut(s) 614
Bpu10I CCTNAGC 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 167, 912
BsaBI GATNNNNATC 1 cut(s) 1014
BsaHI GRCGYC 3 cut(s) 176, 345, 399
BsaI GGTCTC 1 cut(s) 1060
BsaJI CCNNGG 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 324, 791, 895
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 3 cut(s) 672, 834, 1027
Bse8I GATNNNNATC 1 cut(s) 1014
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 4 cut(s) 244, 607, 676, 845
BseJI GATNNNNATC 1 cut(s) 1014
BseLI CCNNNNNNNGG 4 cut(s) 268, 324, 791, 895
BseMII CTCAG 3 cut(s) 148, 234, 888
BseNI ACTGG 3 cut(s) 672, 834, 1027
BseRI GAGGAG 7 cut(s) 134, 148, 151, 205, 208, 382, 535
BseXI GCAGC 7 cut(s) 77, 83, 86, 637, 715, 865, 940
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 731
Bsh1236I CGCG 1 cut(s) 460
Bsh1285I CGRYCG 2 cut(s) 266, 289
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 273
BsiEI CGRYCG 2 cut(s) 266, 289
BsiSI CCGG 4 cut(s) 107, 274, 318, 431
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 4 cut(s) 268, 324, 791, 895
BsmAI GTCTC 1 cut(s) 1060
BsmFI GGGAC 1 cut(s) 872
Bso31I GGTCTC 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 785
Bsp143I GATC 3 cut(s) 88, 263, 388
BspCNI CTCAG 3 cut(s) 147, 233, 887
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 157, 177, 420, 438
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 1060
BsrBI CCGCTC 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 3 cut(s) 672, 834, 1027
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 3 cut(s) 88, 263, 388
BssNI GRCGYC 3 cut(s) 176, 345, 399
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 169, 1039
BstACI GRCGYC 3 cut(s) 176, 345, 399
BstAPI GCANNNNNTGC 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 4 cut(s) 134, 220, 874, 966
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 4 cut(s) 244, 607, 676, 845
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 2 cut(s) 179, 431
BstHHI GCGC 2 cut(s) 178, 430
BstKTI GATC 3 cut(s) 91, 266, 391
BstMAI GTCTC 1 cut(s) 1060
BstMBI GATC 3 cut(s) 88, 263, 388
BstMCI CGRYCG 2 cut(s) 266, 289
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 691
BstSFI CTRYAG 1 cut(s) 937
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 7 cut(s) 77, 83, 86, 637, 715, 865, 940
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 4 cut(s) 244, 607, 676, 845
BtsIMutI CAGTG 3 cut(s) 228, 418, 841
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 2 cut(s) 559, 1046
CfoI GCGC 2 cut(s) 178, 430
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 4 cut(s) 271, 276, 419, 493
CpoI CGGWCCG 2 cut(s) 271, 276
CseI GACGC 1 cut(s) 353
Csp6I GTAC 3 cut(s) 94, 641, 869
CspAI ACCGGT 1 cut(s) 273
CspI CGGWCCG 2 cut(s) 271, 276
CviAII CATG 4 cut(s) 82, 199, 334, 682
CviQI GTAC 3 cut(s) 94, 641, 869
DdeI CTNAG 4 cut(s) 134, 220, 874, 966
DinI GGCGCC 1 cut(s) 177
DpnI GATC 3 cut(s) 90, 265, 390
DpnII GATC 3 cut(s) 88, 263, 388
Eam1104I CTCTTC 2 cut(s) 169, 1039
EarI CTCTTC 2 cut(s) 169, 1039
EciI GGCGGA 4 cut(s) 101, 284, 444, 503
Eco24I GRGCYC 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 1060
Eco47I GGWCC 4 cut(s) 271, 276, 419, 493
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 785
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
FaeI CATG 4 cut(s) 85, 202, 337, 685
FaiI YATR 9 cut(s) 83, 200, 335, 498, 683, 723, 725, 825, 1078
FaqI GGGAC 1 cut(s) 872
FatI CATG 4 cut(s) 81, 198, 333, 681
FauI CCCGC 3 cut(s) 164, 196, 317
FauNDI CATATG 1 cut(s) 723
FokI GGATG 4 cut(s) 231, 614, 663, 852
FriOI GRGCYC 1 cut(s) 785
FspBI CTAG 1 cut(s) 768
GlaI GCGC 2 cut(s) 177, 429
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 614
HaeII RGCGCY 2 cut(s) 179, 431
HapII CCGG 4 cut(s) 107, 274, 318, 431
HgaI GACGC 1 cut(s) 353
HhaI GCGC 2 cut(s) 178, 430
Hin1I GRCGYC 3 cut(s) 176, 345, 399
Hin1II CATG 4 cut(s) 85, 202, 337, 685
Hin6I GCGC 2 cut(s) 176, 428
HinP1I GCGC 2 cut(s) 176, 428
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 2 cut(s) 546, 930
HinfI GANTC 8 cut(s) 110, 281, 314, 338, 562, 853, 925, 1010
HpaI GTTAAC 1 cut(s) 651
HpaII CCGG 4 cut(s) 107, 274, 318, 431
HphI GGTGA 3 cut(s) 407, 995, 1001
Hpy166II GTNNAC 1 cut(s) 651
Hpy188III TCNNGA 2 cut(s) 422, 850
Hpy8I GTNNAC 1 cut(s) 651
Hpy99I CGWCG 2 cut(s) 347, 382
HpyAV CCTTC 5 cut(s) 355, 510, 737, 955, 980
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 8 cut(s) 202, 553, 676, 703, 712, 814, 843, 881
HpyF3I CTNAG 4 cut(s) 134, 220, 874, 966
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 3 cut(s) 176, 345, 399
Hsp92II CATG 4 cut(s) 85, 202, 337, 685
HspAI GCGC 2 cut(s) 176, 428
KasI GGCGCC 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 651
Kzo9I GATC 3 cut(s) 88, 263, 388
LmnI GCTCC 3 cut(s) 161, 457, 633
Lsp1109I GCAGC 7 cut(s) 77, 83, 86, 637, 715, 865, 940
LweI GCATC 6 cut(s) 253, 585, 685, 690, 830, 1033
MaeI CTAG 1 cut(s) 768
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 395, 407, 749
MalI GATC 3 cut(s) 90, 265, 390
MbiI CCGCTC 1 cut(s) 485
MboI GATC 3 cut(s) 88, 263, 388
MboII GAAGA 5 cut(s) 128, 156, 812, 954, 1026
MfeI CAATTG 2 cut(s) 251, 609
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 785
MluCI AATT 3 cut(s) 251, 568, 609
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 4 cut(s) 104, 275, 332, 919
MmeI TCCRAC 6 cut(s) 150, 303, 309, 360, 366, 486
MseI TTAA 3 cut(s) 443, 531, 650
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 405, 878
MspI CCGG 4 cut(s) 107, 274, 318, 431
MspR9I CCNGG 1 cut(s) 693
MunI CAATTG 2 cut(s) 251, 609
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 460
NarI GGCGCC 1 cut(s) 176
NdeI CATATG 1 cut(s) 723
NdeII GATC 3 cut(s) 88, 263, 388
NlaIII CATG 4 cut(s) 85, 202, 337, 685
NlaIV GGNNCC 4 cut(s) 157, 177, 420, 438
NmuCI GTSAC 3 cut(s) 395, 407, 749
NspI RCATGY 1 cut(s) 202
PfeI GAWTC 4 cut(s) 314, 562, 853, 1010
PflMI CCANNNNNTGG 1 cut(s) 791
PinAI ACCGGT 1 cut(s) 273
Ple19I CGATCG 1 cut(s) 266
PleI GAGTC 4 cut(s) 104, 275, 332, 919
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 4 cut(s) 104, 275, 332, 919
PpuMI RGGWCCY 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 531
PsiI TTATAA 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 4 cut(s) 157, 177, 420, 438
PspPI GGNCC 4 cut(s) 271, 276, 419, 493
PspPPI RGGWCCY 1 cut(s) 419
PstNI CAGNNNCTG 2 cut(s) 559, 1046
PsuI RGATCY 1 cut(s) 88
PvuI CGATCG 1 cut(s) 266
PvuII CAGCTG 2 cut(s) 405, 878
RsaI GTAC 3 cut(s) 95, 642, 870
RsaNI GTAC 3 cut(s) 94, 641, 869
RseI CAYNNNNRTG 1 cut(s) 197
Rsr2I CGGWCCG 2 cut(s) 271, 276
RsrII CGGWCCG 2 cut(s) 271, 276
SaqAI TTAA 3 cut(s) 443, 531, 650
Sau3AI GATC 3 cut(s) 88, 263, 388
Sau96I GGNCC 4 cut(s) 271, 276, 419, 493
SchI GAGTC 4 cut(s) 104, 275, 332, 919
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 1 cut(s) 785
SfaNI GCATC 6 cut(s) 253, 585, 685, 690, 830, 1033
SfcI CTRYAG 1 cut(s) 937
SfoI GGCGCC 1 cut(s) 177
SinI GGWCC 4 cut(s) 271, 276, 419, 493
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 182, 927
SmoI CTYRAG 2 cut(s) 182, 927
Sse9I AATT 3 cut(s) 251, 568, 609
SspDI GGCGCC 1 cut(s) 175
SspI AATATT 1 cut(s) 829
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 593, 923
TasI AATT 3 cut(s) 251, 568, 609
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 4 cut(s) 314, 562, 853, 1010
Tru1I TTAA 3 cut(s) 443, 531, 650
Tru9I TTAA 3 cut(s) 443, 531, 650
TscAI CASTG 3 cut(s) 228, 418, 841
TseFI GTSAC 3 cut(s) 395, 407, 749
TseI GCWGC 7 cut(s) 65, 71, 74, 625, 703, 878, 953
Tsp45I GTSAC 3 cut(s) 395, 407, 749
TspDTI ATGAA 4 cut(s) 322, 557, 618, 1026
TspGWI ACGGA 4 cut(s) 56, 111, 366, 596
TspRI CASTG 3 cut(s) 228, 418, 841
Van91I CCANNNNNTGG 1 cut(s) 791
VpaK11BI GGWCC 4 cut(s) 271, 276, 419, 493
VspI ATTAAT 1 cut(s) 531
XapI RAATTY 1 cut(s) 568
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 768
ZraI GACGTC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.