Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

1842545 .. 1844579

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGGTGACTGAGTGGAGAATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCAGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGGTTTTGAAAGTGTGCAATTTCTTCAGGAAAGCTTGGGATTTGGGACGAAATGAGCCTAAAAAAGTGATTCATTGTTTGAAAGTAGGGATGGCAGTCACTGTTGTTTCATTGTTTTACTACATGAGACCTTTGTACGAAGGTATGGGAGGAAATGCTATGTGGGCAGTTATTACTGTTGTGGTTGTCTTTGAAAACACAGTGGGTGCAACAATATGTAAAAGTTTAAACAGAATTTGTGGAACTTTTATGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTCGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGCTTCTGCAGTTACCTTCTCAAGATTTATCCCATCGGTGAAAAAGCGATTTGATTATGGTGCAATGATCTTCGTCCTCACATTCAGTTTAGTTACAGTACTGTCGGGTTACCGGGTGGATAAATTATTGGAAATGACCAACGATAGAGTATACACCATCATCATTGGGACTTCATTGTGCATTATGATAACCATGATTATTTGCCCCATTTGGGCTGGGGAGGGACTCTATATGCTCATCACTCGAAACATGGACAAACTTGCCTATTCGTTAGATGGTTGTGTTGGAGAGTATTTCAATGATAGCAGAAGCTCTTCTGATGGTGACAAGGAATCTGATAAGAAATTGCTTGGCTACAAATGTGTTTTAACGTCAAAAGCAACAGAAGAAACCATGGCTAATTTTGCAAGATGGGAGCCTGCACATGGCCGCTTCAACTCCAGACATCTATGGAAACAATACCTCAAAATTGGCGCATCAATGCGTGCTTGTGCTTATTGCATTGACGCCCTTGATGGTTGTGTGAATTCTGAAAATGAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAACATTGCTTTGAAAGTAAGCTCTGAGTCTTCAAGAGTCATAAAAGAGCTTGCAAGGACTATGAAGACAATGAAGAAATCATCTACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTAATTTATTTATTAATCCGCAGCCACTACAAGGAGCTGACTGCATGGTTAATGCAGTTGAAGAACTAGCTGAGATGGGTGAGTACAAGTCTATTGCAGATGAGAAGAATCAAAACCAGCCTGTTAGTAAAACTAATGTACCTGCAGATGAGCATAAGGAAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

457

Amino Acids

50.99

Weight (kDa)

8.12

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 446	2e-141	Aluminium activated malate transporter
FUSC_2	PF13515	90 - 222	2.4e-08	Fusaric acid resistance protein-like
FUSC	PF04632	97 - 310	1.7e-08	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1354
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	2 cut(s)	910, 1223
AcoI	YGGCCR	1 cut(s)	907
AcsI	RAATTY	3 cut(s)	369, 440, 1006
AcuI	CTGAAG	3 cut(s)	87, 137, 145
AcyI	GRCGYC	1 cut(s)	987
AfaI	GTAC	4 cut(s)	272, 579, 1289, 1344
AfiI	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1235
AgsI	TTSAA	8 cut(s)	145, 217, 329, 778, 916, 1063, 1083, 1265
Alw21I	GWGCWC	1 cut(s)	1182
Alw26I	GTCTC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	907
ApeKI	GCWGC	1 cut(s)	1225
ApoI	RAATTY	3 cut(s)	369, 440, 1006
AseI	ATTAAT	1 cut(s)	1218
Asp700I	GAANNNNTTC	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	956
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	4 cut(s)	40, 529, 815, 1295
BaeI	ACNNNNGTAYC	2 cut(s)	1326, 1359
BanII	GRGCYC	1 cut(s)	1182
BbsI	GAAGAC	2 cut(s)	1071, 1121
Bbv12I	GWGCWC	1 cut(s)	1182
BbvI	GCAGC	1 cut(s)	1237
BccI	CCATC	9 cut(s)	50, 220, 520, 644, 749, 794, 885, 989, 1273
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	1271
BfmI	CTRYAG	3 cut(s)	486, 1137, 1347
BfuAI	ACCTGC	1 cut(s)	1354
BisI	GCNGC	2 cut(s)	910, 1226
BlsI	GCNGC	2 cut(s)	911, 1227
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	593
BmiI	GGNNCC	3 cut(s)	78, 897, 1023
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	417, 965
BpiI	GAAGAC	2 cut(s)	1071, 1121
BpmI	CTGGAG	2 cut(s)	63, 904
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	987
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	873
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1235
Bse3DI	GCAATG	2 cut(s)	549, 1053
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	2 cut(s)	231, 408
BseLI	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1235
BseMI	GCAATG	2 cut(s)	549, 1053
BseMII	CTCAG	4 cut(s)	24, 1017, 1065, 1266
BseXI	GCAGC	1 cut(s)	1237
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	1182
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	3 cut(s)	195, 661, 717
BslI	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1235
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	3 cut(s)	195, 661, 717
BsnI	GGCC	1 cut(s)	909
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	1182
Bsp143I	GATC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	2 cut(s)	910, 1223
BspANI	GGCC	1 cut(s)	909
BspCNI	CTCAG	4 cut(s)	25, 1018, 1066, 1267
BspLI	GGNNCC	3 cut(s)	78, 897, 1023
BspMAI	CTGCAG	2 cut(s)	490, 1351
BspMI	ACCTGC	1 cut(s)	1354
BspQI	GCTCTTC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	549, 1053
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	1 cut(s)	546
BssNAI	GTATAC	1 cut(s)	631
BssNI	GRCGYC	1 cut(s)	987
BssT1I	CCWWGG	1 cut(s)	873
Bst1107I	GTATAC	1 cut(s)	631
Bst4CI	ACNGT	5 cut(s)	238, 313, 337, 577, 582
Bst6I	CTCTTC	2 cut(s)	799, 1206
BstACI	GRCGYC	1 cut(s)	987
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 900, 966, 1101
BstDEI	CTNAG	4 cut(s)	33, 1026, 1074, 1275
BstDSI	CCRYGG	1 cut(s)	873
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	231, 408
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 884
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	3 cut(s)	486, 1137, 1347
BstV1I	GCAGC	1 cut(s)	1237
BstV2I	GAAGAC	2 cut(s)	1071, 1121
BstZ17I	GTATAC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	909
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	231, 408
BtsIMutI	CAGTG	2 cut(s)	234, 342
BveI	ACCTGC	1 cut(s)	1354
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 900, 966, 1101
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	956
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	4 cut(s)	271, 578, 1288, 1343
CviAII	CATG	6 cut(s)	259, 673, 730, 874, 905, 1249
CviQI	GTAC	4 cut(s)	271, 578, 1288, 1343
DdeI	CTNAG	4 cut(s)	33, 1026, 1074, 1275
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	907
Eam1104I	CTCTTC	2 cut(s)	799, 1206
EarI	CTCTTC	2 cut(s)	799, 1206
Ecl136II	GAGCTC	1 cut(s)	1180
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	1182
Eco31I	GGTCTC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	1180
Eco57I	CTGAAG	3 cut(s)	87, 137, 145
Eco91I	GGTNACC	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	1180
EcoO65I	GGTNACC	1 cut(s)	587
EcoRI	GAATTC	2 cut(s)	440, 1006
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	1182
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	6 cut(s)	262, 676, 733, 877, 908, 1252
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	3 cut(s)	195, 661, 717
FatI	CATG	6 cut(s)	258, 672, 729, 873, 904, 1248
FauNDI	CATATG	1 cut(s)	1044
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	2 cut(s)	910, 1226
FokI	GGATG	2 cut(s)	238, 395
FriOI	GRGCYC	1 cut(s)	1182
Fsp4HI	GCNGC	2 cut(s)	910, 1226
FspBI	CTAG	1 cut(s)	1271
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	2 cut(s)	910, 1226
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	63, 904
HaeIII	GGCC	1 cut(s)	909
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	1 cut(s)	956
Hin1I	GRCGYC	1 cut(s)	987
Hin1II	CATG	6 cut(s)	262, 676, 733, 877, 908, 1252
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	7 cut(s)	205, 424, 705, 812, 1076, 1086, 1312
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	4 cut(s)	40, 529, 815, 1295
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	7 cut(s)	67, 117, 126, 799, 817, 1012, 1075
Hpy188III	TCNNGA	8 cut(s)	8, 80, 163, 432, 501, 921, 1025, 1083
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	4 cut(s)	7, 112, 269, 505
HpyCH4III	ACNGT	5 cut(s)	238, 313, 337, 577, 582
HpyCH4IV	ACGT	1 cut(s)	851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 884
HpyF3I	CTNAG	4 cut(s)	33, 1026, 1074, 1275
HpySE526I	ACGT	1 cut(s)	851
Hsp92I	GRCGYC	1 cut(s)	987
Hsp92II	CATG	6 cut(s)	262, 676, 733, 877, 908, 1252
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	799
LmnI	GCTCC	5 cut(s)	82, 895, 1177, 1185, 1238
Lsp1109I	GCAGC	1 cut(s)	1237
LweI	GCATC	2 cut(s)	417, 965
MaeI	CTAG	1 cut(s)	1271
MaeII	ACGT	1 cut(s)	851
MaeIII	GTNAC	6 cut(s)	28, 232, 490, 571, 587, 803
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	1182
MluCI	AATT	9 cut(s)	154, 369, 440, 602, 824, 880, 948, 1006, 1207
MlyI	GAGTC	4 cut(s)	433, 699, 1085, 1095
MmeI	TCCRAC	2 cut(s)	745, 1132
MnlI	CCTC	6 cut(s)	278, 566, 694, 953, 1012, 1180
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	5 cut(s)	362, 848, 1193, 1218, 1254
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	593
MssI	GTTTAAAC	1 cut(s)	363
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 884
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	1044
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	6 cut(s)	262, 676, 733, 877, 908, 1252
NlaIV	GGNNCC	3 cut(s)	78, 897, 1023
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 232, 803
PciSI	GCTCTTC	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	3 cut(s)	205, 812, 1312
PkrI	GCNGC	2 cut(s)	911, 1227
PleI	GAGTC	4 cut(s)	432, 699, 1084, 1094
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	4 cut(s)	432, 699, 1084, 1094
PshBI	ATTAAT	1 cut(s)	1218
Psp124BI	GAGCTC	1 cut(s)	1182
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	695
PspN4I	GGNNCC	3 cut(s)	78, 897, 1023
PstI	CTGCAG	2 cut(s)	490, 1351
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	4 cut(s)	272, 579, 1289, 1344
RsaNI	GTAC	4 cut(s)	271, 578, 1288, 1343
SacI	GAGCTC	1 cut(s)	1182
SapI	GCTCTTC	1 cut(s)	799
SaqAI	TTAA	5 cut(s)	362, 848, 1193, 1218, 1254
SatI	GCNGC	2 cut(s)	910, 1226
Sau3AI	GATC	1 cut(s)	546
ScaI	AGTACT	1 cut(s)	579
SchI	GAGTC	4 cut(s)	433, 699, 1085, 1095
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	1 cut(s)	1182
SfaNI	GCATC	2 cut(s)	417, 965
SfcI	CTRYAG	3 cut(s)	486, 1137, 1347
SmlI	CTYRAG	2 cut(s)	6, 499
SmoI	CTYRAG	2 cut(s)	6, 499
Sse9I	AATT	9 cut(s)	154, 369, 440, 602, 824, 880, 948, 1006, 1207
SsiI	CCGC	2 cut(s)	910, 1223
SspMI	CTAG	1 cut(s)	1271
SstI	GAGCTC	1 cut(s)	1182
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	5 cut(s)	238, 313, 337, 577, 582
TaiI	ACGT	1 cut(s)	854
TaqI	TCGA	2 cut(s)	444, 724
TasI	AATT	9 cut(s)	154, 369, 440, 602, 824, 880, 948, 1006, 1207
TatI	WGTACW	2 cut(s)	577, 1287
TauI	GCSGC	1 cut(s)	912
TfiI	GAWTC	3 cut(s)	205, 812, 1312
Tru1I	TTAA	5 cut(s)	362, 848, 1193, 1218, 1254
Tru9I	TTAA	5 cut(s)	362, 848, 1193, 1218, 1254
TscAI	CASTG	2 cut(s)	241, 342
TseFI	GTSAC	3 cut(s)	28, 232, 803
TseI	GCWGC	1 cut(s)	1225
Tsp45I	GTSAC	3 cut(s)	28, 232, 803
TspDTI	ATGAA	8 cut(s)	51, 197, 234, 442, 642, 1127, 1136, 1175
TspRI	CASTG	2 cut(s)	241, 342
VspI	ATTAAT	1 cut(s)	1218
XapI	RAATTY	3 cut(s)	369, 440, 1006
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	1 cut(s)	1271
ZrmI	AGTACT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.