MD06G1114500.v1.1

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
25399531 .. 25401769
2239 bp
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UTR
Exon/CDS
Intron
MD06G1114500.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGAGTGGAGGATAAAAATGGCCGACGGATCATCTGAAGCTTTGGCTCCCACCGAGGCACGGGGGTGCCCCGGCATAGCATGTCTTGCCCTAAAGGGTCTGGTTGTAGGGTTTGTAATGAAAGTATGGAACTTTCTGAAGAAAGCTTGGGACTTGGGACACAGTGATCCCAGAAAAGTGATCCACTGCCTCAAAGTTGGGATGGCACTCACTGTTGTCTCAGTCTTTTACTACTTGAGACCTCTCTATGAAGGTGTGGGAGGAAATGCCATGTGGGCAGTTATGACAGTTGTGGTTGTCTTCGAAAATACTATTGGTGCAACATTATGTAAAAGTATAAACAGAATATGTGGAACTTTTCTTGCCGGATTTCTTGCCATCGGCATCCATTGGATTGCAAATCGATCCGGGAAAGAATTCGAGCCTTTCATCACTGGAATATCTGTTTTCTTATTAGCTTCTGCAGCAACCTTTTCGAGATTCATACCTTCAGTGAAAGCTCGATTTGATTACGGTGCTATGATCTTCATCCTCACATTCAGCTTAGTTTCGGTGTCGGGTTACCGGGTGGATCAGTTATTCCACATGGCCAGCCAAAGAATGTCGACCATCGTCATTGGGACTTCCTTGTGCGCTGTCATAACCATGATCATTTGCCCCATTTGGGCTGGGGAGGAACTCTACATGCTCATCACTCGGAACATGGACAAGCTTGCCAATTCCTTAGATGGTTGTGTGGCAGATTATTTCAATGATAGTGGAGGCTTTGCTGGTAGTGACAAAGAATCTGACAAGAAATTGCTTGGCTACAAATGCGTTTTGGGGTCAAAGGGAGCAGAAGAATCCATGGCCAATTTTGCTAGATGGGAGCCGGCACACGGCCGATTCAACTTTCGGCATCCATGGAAGCAATACCTCAAAATTGGGGCATCAATGCGTGACTGTGCTTATTGCATCGAGGCCCTCAATGGTTGTGTCAGTTCGGAAAATAAGGTCTCTGAGTTGGCAAAGAAGCATATCAGCAACATTGCCATGAAAGTAAGCTCAGATTCTTCAACAGTGATAAAAGAGCTAGCAAAGACTATGAAAACAATGAAGAAATCAACTGCAATAGATCTCCTAGTTGGAGAAATGAACAATGCAGTTCTGGAGCTCCAAGAGGACTTGAAATCTCTTCCTAACTTATTCATTAATCGACAGCCACAACTGCCGCAGGAATCCGATGATTGTCCCGAAAACAACAACACAAAAGCAGAAGCAGAAGCAGTTGCTCTCATGGACATAATTCCACTTGTGACTTTAGCTTCTCTGCTGATTGAAATTGTTGCAAGGATTGAAGGCATGGTAGGTGCAGTCGAGGAACTGGCTGAGCTGGCTGAGTTCAAGGCAGCCGGCGATCGGAAGGCGAATCAGAATCAGACTACTAATAAAGTTGTACCGGATCAACATGCCCTCCGAAGGGTCTGA

Protein Analysis

489

Amino Acids

53.57

Weight (kDa)

7.88

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 50 - 400 5.2e-145 Aluminium activated malate transporter
FUSC_2 PF13515 76 - 211 7.9e-11 Fusaric acid resistance protein-like
FUSC PF04632 89 - 251 1.4e-10 Fusaric acid resistance protein family
ALMT PF11744 399 - 456 7e-06 Aluminium activated malate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 605
AciI CCGC 1 cut(s) 1211
AclWI GGATC 6 cut(s) 37, 161, 175, 399, 579, 1449
AcoI YGGCCR 4 cut(s) 21, 588, 849, 880
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 3 cut(s) 57, 158, 474
AfaI GTAC 1 cut(s) 1437
AfiI CCNNNNNNNGG 6 cut(s) 60, 664, 878, 1398, 1458, 1459
AgsI TTSAA 7 cut(s) 751, 889, 1056, 1168, 1319, 1337, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AleI CACNNNNGTG 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 1155
Alw26I GTCTC 3 cut(s) 223, 232, 1000
AlwI GGATC 6 cut(s) 37, 161, 175, 399, 579, 1449
AoxI GGCC 5 cut(s) 21, 588, 849, 880, 960
ApeKI GCWGC 2 cut(s) 464, 1388
ApoI RAATTY 1 cut(s) 416
AseI ATTAAT 1 cut(s) 1191
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 961
AsuC2I CCSGG 3 cut(s) 72, 409, 566
AsuII TTCGAA 1 cut(s) 303
AsuNHI GCTAGC 1 cut(s) 1072
BaeGI GKGCMC 1 cut(s) 71
BalI TGGCCA 2 cut(s) 590, 851
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 1155
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 1155
BbvI GCAGC 2 cut(s) 476, 1400
BccI CCATC 5 cut(s) 196, 386, 617, 722, 858
BceAI ACGGC 1 cut(s) 895
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 3 cut(s) 72, 409, 566
BcoDI GTCTC 3 cut(s) 223, 232, 1000
BfaI CTAG 3 cut(s) 861, 1073, 1121
BfmI CTRYAG 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 1114
BisI GCNGC 3 cut(s) 465, 1211, 1389
BlpI GCTNAGC 1 cut(s) 1368
BlsI GCNGC 3 cut(s) 466, 1212, 1390
Bme1390I CCNGG 3 cut(s) 72, 409, 566
BmgT120I GGNCC 1 cut(s) 961
BmiI GGNNCC 3 cut(s) 48, 68, 870
BmrFI CCNGG 3 cut(s) 72, 409, 566
BmsI GCATC 4 cut(s) 393, 907, 938, 963
BmtI GCTAGC 1 cut(s) 1076
BoxI GACNNNNGTC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 1169
Bpu1102I GCTNAGC 1 cut(s) 1368
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 3 cut(s) 72, 409, 566
Bsa29I ATCGAT 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 527
BsaI GGTCTC 2 cut(s) 232, 1000
BsaJI CCNNGG 4 cut(s) 54, 70, 846, 902
BsaWI WCCGGW 1 cut(s) 1438
BsaXI ACNNNNNCTCC 2 cut(s) 1437, 1467
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 664, 878, 1398, 1458, 1459
Bse118I RCCGGY 2 cut(s) 871, 1391
Bse1I ACTGG 2 cut(s) 439, 1368
Bse3DI GCAATG 1 cut(s) 1026
Bse8I GATNNNNATC 1 cut(s) 527
BseCI ATCGAT 1 cut(s) 403
BseDI CCNNGG 4 cut(s) 54, 70, 846, 902
BseGI GGATG 4 cut(s) 207, 384, 528, 898
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 6 cut(s) 60, 664, 878, 1398, 1458, 1459
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 5 cut(s) 234, 990, 1059, 1359, 1368
BseNI ACTGG 2 cut(s) 439, 1368
BseSI GKGCMC 1 cut(s) 71
BseX3I CGGCCG 1 cut(s) 880
BseXI GCAGC 2 cut(s) 476, 1400
BseYI CCCAGC 1 cut(s) 668
BsgI GTGCAG 1 cut(s) 1371
Bsh1285I CGRYCG 2 cut(s) 883, 1399
BshFI GGCC 5 cut(s) 23, 590, 851, 882, 962
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 403
BsiEI CGRYCG 2 cut(s) 883, 1399
BsiHKAI GWGCWC 1 cut(s) 1155
BsiSI CCGG 7 cut(s) 72, 366, 408, 565, 872, 1392, 1439
BslFI GGGAC 4 cut(s) 164, 171, 634, 1215
BslI CCNNNNNNNGG 6 cut(s) 60, 664, 878, 1398, 1458, 1459
BsmAI GTCTC 3 cut(s) 223, 232, 1000
BsmFI GGGAC 4 cut(s) 164, 171, 634, 1215
BsnI GGCC 5 cut(s) 23, 590, 851, 882, 962
Bso31I GGTCTC 2 cut(s) 232, 1000
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 71, 1155
Bsp1720I GCTNAGC 1 cut(s) 1368
Bsp19I CCATGG 2 cut(s) 846, 902
BspACI CCGC 1 cut(s) 1211
BspANI GGCC 5 cut(s) 23, 590, 851, 882, 962
BspCNI CTCAG 5 cut(s) 233, 991, 1058, 1360, 1369
BspDI ATCGAT 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 48, 68, 870
BspMAI CTGCAG 1 cut(s) 466
BspOI GCTAGC 1 cut(s) 1076
BspPI GGATC 6 cut(s) 37, 161, 175, 399, 579, 1449
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 66
BspTNI GGTCTC 2 cut(s) 232, 1000
BsrDI GCAATG 1 cut(s) 1026
BsrFI RCCGGY 2 cut(s) 871, 1391
BsrI ACTGG 2 cut(s) 439, 1368
BssAI RCCGGY 2 cut(s) 871, 1391
BssECI CCNNGG 4 cut(s) 54, 70, 846, 902
BssT1I CCWWGG 2 cut(s) 846, 902
Bst4CI ACNGT 6 cut(s) 164, 214, 289, 515, 944, 1060
Bst6I CTCTTC 1 cut(s) 1179
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 6 cut(s) 592, 714, 873, 1074, 1374, 1393
BstDEI CTNAG 7 cut(s) 220, 544, 724, 999, 1045, 1368, 1377
BstDSI CCRYGG 2 cut(s) 846, 902
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 4 cut(s) 207, 384, 528, 898
BstHHI GCGC 1 cut(s) 635
BstMAI GTCTC 3 cut(s) 223, 232, 1000
BstMCI CGRYCG 2 cut(s) 883, 1399
BstMWI GCNNNNNNNGC 7 cut(s) 86, 275, 464, 813, 857, 1207, 1373
BstNSI RCATGY 3 cut(s) 84, 688, 1451
BstPAI GACNNNNGTC 1 cut(s) 611
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 70, 407, 564
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 476, 1400
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 1114
BstYI RGATCY 1 cut(s) 1114
BstZI CGGCCG 1 cut(s) 880
Bsu15I ATCGAT 1 cut(s) 403
BsuRI GGCC 5 cut(s) 23, 590, 851, 882, 962
BsuTUI ATCGAT 1 cut(s) 403
BtgI CCRYGG 2 cut(s) 846, 902
BtsCI GGATG 4 cut(s) 207, 384, 528, 898
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 6 cut(s) 169, 184, 210, 432, 498, 1065
Cac8I GCNNGC 6 cut(s) 592, 714, 873, 1074, 1374, 1393
CfoI GCGC 1 cut(s) 635
Cfr10I RCCGGY 2 cut(s) 871, 1391
Cfr13I GGNCC 1 cut(s) 961
ClaI ATCGAT 1 cut(s) 403
Csp6I GTAC 1 cut(s) 1436
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviQI GTAC 1 cut(s) 1436
DdeI CTNAG 7 cut(s) 220, 544, 724, 999, 1045, 1368, 1377
EaeI YGGCCR 4 cut(s) 21, 588, 849, 880
EagI CGGCCG 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 1179
EarI CTCTTC 1 cut(s) 1179
Ecl136II GAGCTC 1 cut(s) 1153
EclXI CGGCCG 1 cut(s) 880
Eco130I CCWWGG 2 cut(s) 846, 902
Eco24I GRGCYC 1 cut(s) 1155
Eco31I GGTCTC 2 cut(s) 232, 1000
Eco52I CGGCCG 1 cut(s) 880
Eco53kI GAGCTC 1 cut(s) 1153
Eco57I CTGAAG 3 cut(s) 57, 158, 474
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 1153
EcoO109I RGGNCCY 1 cut(s) 961
EcoO65I GGTNACC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 846, 902
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 2 cut(s) 846, 902
FaqI GGGAC 4 cut(s) 164, 171, 634, 1215
FbaI TGATCA 1 cut(s) 648
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 3 cut(s) 465, 1211, 1389
FokI GGATG 4 cut(s) 214, 371, 515, 885
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 3 cut(s) 465, 1211, 1389
FspBI CTAG 3 cut(s) 861, 1073, 1121
GlaI GCGC 1 cut(s) 634
GluI GCNGC 3 cut(s) 465, 1211, 1389
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 1169
HaeIII GGCC 5 cut(s) 23, 590, 851, 882, 962
HapII CCGG 7 cut(s) 72, 366, 408, 565, 872, 1392, 1439
HhaI GCGC 1 cut(s) 635
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 3 cut(s) 39, 144, 710
HinfI GANTC 8 cut(s) 480, 785, 842, 885, 1049, 1217, 1408, 1414
HpaII CCGG 7 cut(s) 72, 366, 408, 565, 872, 1392, 1439
Hpy166II GTNNAC 1 cut(s) 606
Hpy188III TCNNGA 3 cut(s) 477, 1148, 1232
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 5 cut(s) 245, 498, 1331, 1396, 1452
HpyCH4III ACNGT 6 cut(s) 164, 214, 289, 515, 944, 1060
HpyCH4V TGCA 8 cut(s) 320, 398, 464, 954, 1109, 1142, 1328, 1352
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 275, 464, 813, 857, 1207, 1373
HpyF3I CTNAG 7 cut(s) 220, 544, 724, 999, 1045, 1368, 1377
HspAI GCGC 1 cut(s) 633
KroI GCCGGC 2 cut(s) 871, 1391
KroNI GCCGGC 2 cut(s) 873, 1393
Ksp22I TGATCA 1 cut(s) 648
LmnI GCTCC 5 cut(s) 52, 833, 868, 1150, 1158
Lsp1109I GCAGC 2 cut(s) 476, 1400
LweI GCATC 4 cut(s) 393, 907, 938, 963
MaeI CTAG 3 cut(s) 861, 1073, 1121
MaeIII GTNAC 4 cut(s) 560, 776, 938, 1294
MboII GAAGA 7 cut(s) 151, 292, 517, 851, 1044, 1108, 1166
MflI RGATCY 1 cut(s) 1114
MhlI GDGCHC 2 cut(s) 71, 1155
MlsI TGGCCA 2 cut(s) 590, 851
MluCI AATT 7 cut(s) 416, 718, 797, 853, 921, 1284, 1320
MluNI TGGCCA 2 cut(s) 590, 851
MmeI TCCRAC 1 cut(s) 1105
Mox20I TGGCCA 2 cut(s) 590, 851
MroNI GCCGGC 2 cut(s) 871, 1391
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 2 cut(s) 590, 851
MseI TTAA 1 cut(s) 1191
MslI CAYNNNNRTG 3 cut(s) 64, 644, 1031
Msp20I TGGCCA 2 cut(s) 590, 851
MspI CCGG 7 cut(s) 72, 366, 408, 565, 872, 1392, 1439
MspR9I CCNGG 3 cut(s) 72, 409, 566
MwoI GCNNNNNNNGC 7 cut(s) 86, 275, 464, 813, 857, 1207, 1373
NaeI GCCGGC 2 cut(s) 873, 1393
NciI CCSGG 3 cut(s) 72, 409, 566
NcoI CCATGG 2 cut(s) 846, 902
NgoMIV GCCGGC 2 cut(s) 871, 1391
NheI GCTAGC 1 cut(s) 1072
NlaIV GGNNCC 3 cut(s) 48, 68, 870
NmuCI GTSAC 3 cut(s) 776, 938, 1294
NspI RCATGY 3 cut(s) 84, 688, 1451
NspV TTCGAA 1 cut(s) 303
OliI CACNNNNGTG 1 cut(s) 64
PdiI GCCGGC 2 cut(s) 873, 1393
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 8 cut(s) 480, 785, 842, 885, 1049, 1217, 1408, 1414
PfoI TCCNGGA 1 cut(s) 407
PkrI GCNGC 3 cut(s) 466, 1212, 1390
Ple19I CGATCG 1 cut(s) 1399
PshAI GACNNNNGTC 1 cut(s) 611
PshBI ATTAAT 1 cut(s) 1191
Psp124BI GAGCTC 1 cut(s) 1155
PspEI GGTNACC 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 668
PspN4I GGNNCC 3 cut(s) 48, 68, 870
PspPI GGNCC 1 cut(s) 961
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 1114
PvuI CGATCG 1 cut(s) 1399
RsaI GTAC 1 cut(s) 1437
RsaNI GTAC 1 cut(s) 1436
RseI CAYNNNNRTG 3 cut(s) 64, 644, 1031
SacI GAGCTC 1 cut(s) 1155
SalI GTCGAC 1 cut(s) 604
SaqAI TTAA 1 cut(s) 1191
SatI GCNGC 3 cut(s) 465, 1211, 1389
Sau96I GGNCC 1 cut(s) 961
ScrFI CCNGG 3 cut(s) 72, 409, 566
SduI GDGCHC 2 cut(s) 71, 1155
SfaNI GCATC 4 cut(s) 393, 907, 938, 963
SfcI CTRYAG 1 cut(s) 462
SfuI TTCGAA 1 cut(s) 303
SmiMI CAYNNNNRTG 3 cut(s) 64, 644, 1031
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 7 cut(s) 416, 718, 797, 853, 921, 1284, 1320
SsiI CCGC 1 cut(s) 1211
SspMI CTAG 3 cut(s) 861, 1073, 1121
SstI GAGCTC 1 cut(s) 1155
StyD4I CCNGG 3 cut(s) 70, 407, 564
StyI CCWWGG 2 cut(s) 846, 902
TaaI ACNGT 6 cut(s) 164, 214, 289, 515, 944, 1060
TaqI TCGA 9 cut(s) 303, 403, 420, 476, 502, 605, 957, 1195, 1356
TasI AATT 7 cut(s) 416, 718, 797, 853, 921, 1284, 1320
TauI GCSGC 1 cut(s) 1213
TfiI GAWTC 8 cut(s) 480, 785, 842, 885, 1049, 1217, 1408, 1414
Tru1I TTAA 1 cut(s) 1191
Tru9I TTAA 1 cut(s) 1191
TscAI CASTG 6 cut(s) 169, 191, 217, 439, 498, 1065
TseFI GTSAC 3 cut(s) 776, 938, 1294
TseI GCWGC 2 cut(s) 464, 1388
Tsp45I GTSAC 3 cut(s) 776, 938, 1294
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 6 cut(s) 169, 191, 217, 439, 498, 1065
VspI ATTAAT 1 cut(s) 1191
XapI RAATTY 1 cut(s) 416
XceI RCATGY 3 cut(s) 84, 688, 1451
XmiI GTMKAC 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 3 cut(s) 861, 1073, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.