Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

1842693 .. 1844579

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG026400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGGTGACTGAGTGGAGAATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCAGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGGTTTTGAAAGTGTGCAATTTCTTCAGGAAAGCTTGGGATTTGGGACGAAATGAGCCTAAAAAAGTGATTCATTGTTTGAAAGTAGGGATGGCAGTCACTGTTGTTTCATTGTTTTACTACATGAGACCTTTGTACGAAGGTATGGGAGGAAATGCTATGTGGGCAGTTATTACTGTTGTGGTTGTCTTTGAAAACACAGTGGGTGCAACAATATGTAAAAGTTTAAACAGAATTTGTGGAACTTTTATGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTCGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGCTTCTGCAGTTACCTTCTCAAGATTTATCCCATCGGTGAAAAAGCGATTTGATTATGGTGCAATGATCTTCGTCCTCACATTCAGTTTAGTTACAGTACTGTCGGGTTACCGGGTGGATAAATTATTGGAAATGACCAACGATAGAGTATACACCATCATCATTGGGACTTCATTGTGCATTATGATAACCATGATTATTTGCCCCATTTGGGCTGGGGAGGGACTCTATATGCTCATCACTCGAAACATGGACAAACTTGCCTATTCGTTAGATGGTTGTGTTGGAGAGTATTTCAATGATAGCAGAAGCTCTTCTGATGGTGACAAGGAATCTGATAAGAAATTGCTTGGCTACAAATGTGTTTTAACGTCAAAAGCAACAGAAGAAACCATGGCTAATTTTGCAAGATGGGAGCCTGCACATGGCCGCTTCAACTCCAGACATCTATGGAAACAATACCTCAAAATTGGCGCATCAATGCGTGCTTGTGCTTATTGCATTGACGCCCTTGATGGTTGTGTGAATTCTGAAAATGAGAAAGATATCACCAATGCTTATCTTCAACTAGCTACTCCATCTCGTCAACAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAACATTGCTTTGAAAGTAAGCTCTGAGTCTTCAAGAGTCATAAAAGAGCTTGCAAGGACTATGAAGACAATGAAGAAATCATCTACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTAATTTATTTATTAATCCGCAGCCACTACAAGGAGCTGACTGTCCTGAAAAAAAGGAACCCAGGAGTAGTTGCTCTCATGGATATCATGCCACTTGTTACTTTAGTTTCTTTACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

458

Amino Acids

51.24

Weight (kDa)

8.68

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 431	1.1e-133	Aluminium activated malate transporter
FUSC_2	PF13515	90 - 222	2.4e-08	Fusaric acid resistance protein-like
FUSC	PF04632	97 - 310	2.2e-08	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	2 cut(s)	910, 1274
AcoI	YGGCCR	1 cut(s)	907
AcsI	RAATTY	3 cut(s)	369, 440, 1006
AcuI	CTGAAG	3 cut(s)	87, 137, 145
AcyI	GRCGYC	1 cut(s)	987
AfaI	GTAC	2 cut(s)	272, 579
AfiI	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1286
AgsI	TTSAA	8 cut(s)	145, 217, 329, 778, 916, 1046, 1114, 1134
AjnI	CCWGG	1 cut(s)	1316
Alw21I	GWGCWC	1 cut(s)	1233
Alw26I	GTCTC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	907
ApeKI	GCWGC	1 cut(s)	1276
ApoI	RAATTY	3 cut(s)	369, 440, 1006
AseI	ATTAAT	1 cut(s)	1269
Asp700I	GAANNNNTTC	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	956
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	4 cut(s)	40, 529, 815, 1021
BanII	GRGCYC	1 cut(s)	1233
BbsI	GAAGAC	2 cut(s)	1122, 1172
Bbv12I	GWGCWC	1 cut(s)	1233
BbvI	GCAGC	1 cut(s)	1288
BccI	CCATC	9 cut(s)	50, 220, 520, 644, 749, 794, 885, 989, 1066
BciT130I	CCWGG	1 cut(s)	1318
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	1049
BfmI	CTRYAG	2 cut(s)	486, 1188
BisI	GCNGC	2 cut(s)	910, 1277
BlsI	GCNGC	2 cut(s)	911, 1278
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	2 cut(s)	593, 1318
BmiI	GGNNCC	4 cut(s)	78, 897, 1074, 1314
BmrFI	CCNGG	2 cut(s)	593, 1318
BmsI	GCATC	2 cut(s)	417, 965
BpiI	GAAGAC	2 cut(s)	1122, 1172
BpmI	CTGGAG	2 cut(s)	63, 904
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	987
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	873, 1316
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1286
Bse3DI	GCAATG	2 cut(s)	549, 1104
BseBI	CCWGG	1 cut(s)	1318
BseDI	CCNNGG	2 cut(s)	873, 1316
BseGI	GGATG	2 cut(s)	231, 408
BseLI	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1286
BseMI	GCAATG	2 cut(s)	549, 1104
BseMII	CTCAG	3 cut(s)	24, 1068, 1116
BseXI	GCAGC	1 cut(s)	1288
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	1233
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	3 cut(s)	195, 661, 717
BslI	CCNNNNNNNGG	4 cut(s)	86, 691, 905, 1286
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	3 cut(s)	195, 661, 717
BsnI	GGCC	1 cut(s)	909
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	1233
Bsp143I	GATC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	2 cut(s)	910, 1274
BspANI	GGCC	1 cut(s)	909
BspCNI	CTCAG	3 cut(s)	25, 1069, 1117
BspLI	GGNNCC	4 cut(s)	78, 897, 1074, 1314
BspMAI	CTGCAG	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	549, 1104
BssECI	CCNNGG	2 cut(s)	873, 1316
BssMI	GATC	1 cut(s)	546
BssNAI	GTATAC	1 cut(s)	631
BssNI	GRCGYC	1 cut(s)	987
BssT1I	CCWWGG	1 cut(s)	873
Bst1107I	GTATAC	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	1318
Bst4CI	ACNGT	6 cut(s)	238, 313, 337, 577, 582, 1298
Bst6I	CTCTTC	2 cut(s)	799, 1257
BstACI	GRCGYC	1 cut(s)	987
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 900, 966, 1152
BstDEI	CTNAG	3 cut(s)	33, 1077, 1125
BstDSI	CCRYGG	1 cut(s)	873
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	231, 408
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 884
BstNI	CCWGG	1 cut(s)	1318
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	591, 1316
BstSFI	CTRYAG	2 cut(s)	486, 1188
BstV1I	GCAGC	1 cut(s)	1288
BstV2I	GAAGAC	2 cut(s)	1122, 1172
BstZ17I	GTATAC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	909
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	231, 408
BtsIMutI	CAGTG	2 cut(s)	234, 342
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 900, 966, 1152
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	956
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	2 cut(s)	271, 578
CviAII	CATG	7 cut(s)	259, 673, 730, 874, 905, 1334, 1343
CviQI	GTAC	2 cut(s)	271, 578
DdeI	CTNAG	3 cut(s)	33, 1077, 1125
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	907
Eam1104I	CTCTTC	2 cut(s)	799, 1257
EarI	CTCTTC	2 cut(s)	799, 1257
Ecl136II	GAGCTC	1 cut(s)	1231
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	1233
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	2 cut(s)	1027, 1340
Eco53kI	GAGCTC	1 cut(s)	1231
Eco57I	CTGAAG	3 cut(s)	87, 137, 145
Eco91I	GGTNACC	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	1231
EcoO65I	GGTNACC	1 cut(s)	587
EcoRI	GAATTC	2 cut(s)	440, 1006
EcoRII	CCWGG	1 cut(s)	1316
EcoRV	GATATC	2 cut(s)	1027, 1340
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	1233
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	7 cut(s)	262, 676, 733, 877, 908, 1337, 1346
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	3 cut(s)	195, 661, 717
FatI	CATG	7 cut(s)	258, 672, 729, 873, 904, 1333, 1342
FauNDI	CATATG	1 cut(s)	1095
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	2 cut(s)	910, 1277
FokI	GGATG	2 cut(s)	238, 395
FriOI	GRGCYC	1 cut(s)	1233
Fsp4HI	GCNGC	2 cut(s)	910, 1277
FspBI	CTAG	1 cut(s)	1049
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	2 cut(s)	910, 1277
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	63, 904
HaeIII	GGCC	1 cut(s)	909
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	1 cut(s)	956
Hin1I	GRCGYC	1 cut(s)	987
Hin1II	CATG	7 cut(s)	262, 676, 733, 877, 908, 1337, 1346
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HincII	GTYRAC	1 cut(s)	1067
HindII	GTYRAC	1 cut(s)	1067
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	6 cut(s)	205, 424, 705, 812, 1127, 1137
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	4 cut(s)	40, 529, 815, 1021
Hpy166II	GTNNAC	2 cut(s)	631, 1067
Hpy188I	TCNGA	7 cut(s)	67, 117, 126, 799, 817, 1012, 1126
Hpy188III	TCNNGA	9 cut(s)	8, 80, 163, 432, 501, 921, 1076, 1134, 1301
Hpy8I	GTNNAC	2 cut(s)	631, 1067
HpyAV	CCTTC	4 cut(s)	7, 112, 269, 505
HpyCH4III	ACNGT	6 cut(s)	238, 313, 337, 577, 582, 1298
HpyCH4IV	ACGT	1 cut(s)	851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 884
HpyF3I	CTNAG	3 cut(s)	33, 1077, 1125
HpySE526I	ACGT	1 cut(s)	851
Hsp92I	GRCGYC	1 cut(s)	987
Hsp92II	CATG	7 cut(s)	262, 676, 733, 877, 908, 1337, 1346
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	799
LmnI	GCTCC	5 cut(s)	82, 895, 1228, 1236, 1289
Lsp1109I	GCAGC	1 cut(s)	1288
LweI	GCATC	2 cut(s)	417, 965
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	1 cut(s)	851
MaeIII	GTNAC	7 cut(s)	28, 232, 490, 571, 587, 803, 1352
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	9 cut(s)	151, 541, 786, 878, 1034, 1122, 1177, 1186, 1244
MhlI	GDGCHC	1 cut(s)	1233
MluCI	AATT	9 cut(s)	154, 369, 440, 602, 824, 880, 948, 1006, 1258
MlyI	GAGTC	4 cut(s)	433, 699, 1136, 1146
MmeI	TCCRAC	2 cut(s)	745, 1183
MnlI	CCTC	5 cut(s)	278, 566, 694, 953, 1231
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	4 cut(s)	362, 848, 1244, 1269
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	2 cut(s)	593, 1318
MssI	GTTTAAAC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	1318
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 884
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	1095
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	7 cut(s)	262, 676, 733, 877, 908, 1337, 1346
NlaIV	GGNNCC	4 cut(s)	78, 897, 1074, 1314
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 232, 803
PciSI	GCTCTTC	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	205, 812
PkrI	GCNGC	2 cut(s)	911, 1278
PleI	GAGTC	4 cut(s)	432, 699, 1135, 1145
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	4 cut(s)	432, 699, 1135, 1145
PshBI	ATTAAT	1 cut(s)	1269
Psp124BI	GAGCTC	1 cut(s)	1233
Psp6I	CCWGG	1 cut(s)	1316
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	1316
PspN4I	GGNNCC	4 cut(s)	78, 897, 1074, 1314
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	272, 579
RsaNI	GTAC	2 cut(s)	271, 578
SacI	GAGCTC	1 cut(s)	1233
SapI	GCTCTTC	1 cut(s)	799
SaqAI	TTAA	4 cut(s)	362, 848, 1244, 1269
SatI	GCNGC	2 cut(s)	910, 1277
Sau3AI	GATC	1 cut(s)	546
ScaI	AGTACT	1 cut(s)	579
SchI	GAGTC	4 cut(s)	433, 699, 1136, 1146
ScrFI	CCNGG	2 cut(s)	593, 1318
SduI	GDGCHC	1 cut(s)	1233
SfaNI	GCATC	2 cut(s)	417, 965
SfcI	CTRYAG	2 cut(s)	486, 1188
SmlI	CTYRAG	2 cut(s)	6, 499
SmoI	CTYRAG	2 cut(s)	6, 499
Sse9I	AATT	9 cut(s)	154, 369, 440, 602, 824, 880, 948, 1006, 1258
SsiI	CCGC	2 cut(s)	910, 1274
SspMI	CTAG	1 cut(s)	1049
SstI	GAGCTC	1 cut(s)	1233
StyD4I	CCNGG	2 cut(s)	591, 1316
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	6 cut(s)	238, 313, 337, 577, 582, 1298
TaiI	ACGT	1 cut(s)	854
TaqI	TCGA	2 cut(s)	444, 724
TasI	AATT	9 cut(s)	154, 369, 440, 602, 824, 880, 948, 1006, 1258
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	1 cut(s)	912
TfiI	GAWTC	2 cut(s)	205, 812
Tru1I	TTAA	4 cut(s)	362, 848, 1244, 1269
Tru9I	TTAA	4 cut(s)	362, 848, 1244, 1269
TscAI	CASTG	2 cut(s)	241, 342
TseFI	GTSAC	3 cut(s)	28, 232, 803
TseI	GCWGC	1 cut(s)	1276
Tsp45I	GTSAC	3 cut(s)	28, 232, 803
TspDTI	ATGAA	8 cut(s)	51, 197, 234, 442, 642, 1178, 1187, 1226
TspRI	CASTG	2 cut(s)	241, 342
VspI	ATTAAT	1 cut(s)	1269
XapI	RAATTY	3 cut(s)	369, 440, 1006
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	1 cut(s)	1049
ZrmI	AGTACT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.