Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007722.1

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

88298 .. 90282

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007722.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggctcaagagaaggaaatgagcagggtgactgagtggaggataagaatggcagatggttcatctgaagctttggctccagaagccgggcttgcctgccgagcttggcttgctctgaagggtctgattatggggttggttctgaaagtgtgcaatttcttcaggaaagcttgggatttgggacgaaatgagcctaaaaaagtgattcattgtttgaaagtagggatggcactcactgttttactacatgagacctttgtacgaagtttagttgcagtgtcgggttaccgggtggataaattattggaaatggcaaacaatagagtatacaccatcatcattgggactgcattatgcattatgataaccatgattatttaccccatttgggctggggaggaactctatatgctcatcacccgaaacatggacaaacttgcctattccttagatggttgtgttggagagtatttcaatgaaagcagaagctcttctgagggtgacaaggaatctgctaagaaattacttggctacaaatgtgttttaacctcaaaagcaacagaagaagccatggctaattttgcaagatgggagcctgcacatggccgcttcaacttcagacatccatggaaacaatacctcaaaatcggggcatcaatgcgcgcttgtgcttattgcattgacgcccttgatggttgcgtgaattccgaaaatgaggttcctgagttgataaagaagcatatgagcaacattgctttgaaagtaagctctgagtcttcaagagtcatcaaagagcttgcaaagactatgaagacaatgaagaaatcatctactatagattatttagttggagaaatgaacaatgcagtcttggagctccaagaggacttaaaatctcttcctactttatttattaatccgcagccactacaaggagctgactgtcctgaaaaaaagaacacgggagcagttgctctcatggatatcatgccacttgtgactttagtttctttactgattgagattgctacaaggattgaaggcttggttaatgcagttgaagaactagctgagatgggtgagtacaagtcagttgcagatgagaagaatcaaaaccagccagttagtaaaactaatgtaccagatgaacataaggaaggggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

388

Amino Acids

43.31

Weight (kDa)

6.63

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	663
AciI	CCGC	2 cut(s)	607, 920
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	4 cut(s)	87, 137, 145, 601
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	3 cut(s)	261, 1085, 1140
AfiI	CCNNNNNNNGG	5 cut(s)	86, 388, 427, 602, 932
AgsI	TTSAA	7 cut(s)	217, 475, 613, 760, 780, 1040, 1061
AluBI	AGCT	9 cut(s)	71, 104, 170, 489, 768, 796, 877, 938, 1070
AluI	AGCT	9 cut(s)	71, 104, 170, 489, 768, 796, 877, 938, 1070
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	1 cut(s)	703
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	2 cut(s)	663, 665
AsuC2I	CCSGG	2 cut(s)	88, 290
AsuHPI	GGTGA	4 cut(s)	40, 409, 512, 1091
BaeI	ACNNNNGTAYC	2 cut(s)	1122, 1155
BanII	GRGCYC	1 cut(s)	879
BbsI	GAAGAC	2 cut(s)	768, 818
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	7 cut(s)	50, 220, 341, 446, 582, 686, 1069
BcnI	CCSGG	2 cut(s)	88, 290
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	1 cut(s)	834
BisI	GCNGC	2 cut(s)	607, 923
BlsI	GCNGC	2 cut(s)	608, 924
Bme1390I	CCNGG	2 cut(s)	88, 290
BmiI	GGNNCC	3 cut(s)	78, 594, 720
BmrFI	CCNGG	2 cut(s)	88, 290
BmsI	GCATC	1 cut(s)	662
BpiI	GAAGAC	2 cut(s)	768, 818
BpmI	CTGGAG	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	88, 290
BsaHI	GRCGYC	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	570, 626
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 388, 427, 602, 932
Bse1I	ACTGG	1 cut(s)	1121
Bse3DI	GCAATG	1 cut(s)	750
BseDI	CCNNGG	2 cut(s)	570, 626
BseGI	GGATG	2 cut(s)	231, 622
BseLI	CCNNNNNNNGG	5 cut(s)	86, 388, 427, 602, 932
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	5 cut(s)	24, 486, 714, 762, 1062
BseNI	ACTGG	1 cut(s)	1121
BsePI	GCGCGC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	934
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	2 cut(s)	87, 289
BslFI	GGGAC	2 cut(s)	195, 358
BslI	CCNNNNNNNGG	5 cut(s)	86, 388, 427, 602, 932
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	195, 358
BsnI	GGCC	1 cut(s)	606
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp19I	CCATGG	2 cut(s)	570, 626
BspACI	CCGC	2 cut(s)	607, 920
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	5 cut(s)	25, 487, 715, 763, 1063
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	78, 594, 720
BspQI	GCTCTTC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	750
BsrI	ACTGG	1 cut(s)	1121
BssECI	CCNNGG	2 cut(s)	570, 626
BssHII	GCGCGC	1 cut(s)	661
BssNAI	GTATAC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	570, 626
Bst1107I	GTATAC	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	238, 944
Bst6I	CTCTTC	2 cut(s)	496, 903
BstACI	GRCGYC	1 cut(s)	684
BstC8I	GCNNGC	6 cut(s)	93, 97, 111, 597, 663, 798
BstDEI	CTNAG	7 cut(s)	33, 448, 495, 516, 723, 771, 1071
BstDSI	CCRYGG	2 cut(s)	570, 626
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	231, 622
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	2 cut(s)	663, 665
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 92, 101, 110, 581
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	86, 288
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	1 cut(s)	934
BstV2I	GAAGAC	2 cut(s)	768, 818
BstZ17I	GTATAC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	606
BtgI	CCRYGG	2 cut(s)	570, 626
BtsCI	GGATG	2 cut(s)	231, 622
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	234, 282
Cac8I	GCNNGC	6 cut(s)	93, 97, 111, 597, 663, 798
CfoI	GCGC	2 cut(s)	663, 665
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	260, 1084, 1139
CviAII	CATG	8 cut(s)	248, 370, 427, 571, 602, 627, 979, 988
CviQI	GTAC	3 cut(s)	260, 1084, 1139
DdeI	CTNAG	7 cut(s)	33, 448, 495, 516, 723, 771, 1071
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	496, 903
EarI	CTCTTC	2 cut(s)	496, 903
Ecl136II	GAGCTC	1 cut(s)	877
Eco130I	CCWWGG	2 cut(s)	570, 626
Eco24I	GRGCYC	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	985
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	4 cut(s)	87, 137, 145, 601
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	877
EcoO65I	GGTNACC	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	703
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	2 cut(s)	570, 626
EcoT22I	ATGCAT	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	2 cut(s)	570, 626
FaeI	CATG	8 cut(s)	251, 373, 430, 574, 605, 630, 982, 991
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	195, 358
FatI	CATG	8 cut(s)	247, 369, 426, 570, 601, 626, 978, 987
FauNDI	CATATG	1 cut(s)	741
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	607, 923
FokI	GGATG	2 cut(s)	238, 609
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	2 cut(s)	607, 923
FspBI	CTAG	1 cut(s)	1067
GlaI	GCGC	2 cut(s)	662, 664
GluI	GCNGC	2 cut(s)	607, 923
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	2 cut(s)	87, 289
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	2 cut(s)	663, 665
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	8 cut(s)	251, 373, 430, 574, 605, 630, 982, 991
Hin6I	GCGC	2 cut(s)	661, 663
HinP1I	GCGC	2 cut(s)	661, 663
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	5 cut(s)	205, 509, 773, 783, 1108
HpaII	CCGG	2 cut(s)	87, 289
HphI	GGTGA	4 cut(s)	40, 409, 512, 1091
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	8 cut(s)	67, 117, 126, 144, 496, 620, 709, 772
Hpy188III	TCNNGA	6 cut(s)	8, 80, 163, 722, 780, 947
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	7, 112, 1034, 1151
HpyCH4III	ACNGT	2 cut(s)	238, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 92, 101, 110, 581
HpyF3I	CTNAG	7 cut(s)	33, 448, 495, 516, 723, 771, 1071
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	8 cut(s)	251, 373, 430, 574, 605, 630, 982, 991
HspAI	GCGC	2 cut(s)	661, 663
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	6 cut(s)	82, 592, 874, 882, 935, 965
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	1067
MaeIII	GTNAC	4 cut(s)	28, 284, 500, 997
MboII	GAAGA	9 cut(s)	151, 483, 575, 768, 823, 832, 890, 1073, 1117
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	5 cut(s)	154, 299, 521, 577, 703
MlyI	GAGTC	2 cut(s)	782, 792
MmeI	TCCRAC	2 cut(s)	442, 829
MnlI	CCTC	7 cut(s)	33, 391, 490, 559, 650, 709, 877
Mph1103I	ATGCAT	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	4 cut(s)	545, 890, 915, 1050
MspI	CCGG	2 cut(s)	87, 289
MspR9I	CCNGG	2 cut(s)	88, 290
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	5 cut(s)	83, 92, 101, 110, 581
NciI	CCSGG	2 cut(s)	88, 290
NcoI	CCATGG	2 cut(s)	570, 626
NdeI	CATATG	1 cut(s)	741
NlaIII	CATG	8 cut(s)	251, 373, 430, 574, 605, 630, 982, 991
NlaIV	GGNNCC	3 cut(s)	78, 594, 720
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 500, 997
NsiI	ATGCAT	1 cut(s)	359
PauI	GCGCGC	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	205, 509, 1108
PkrI	GCNGC	2 cut(s)	608, 924
PleI	GAGTC	2 cut(s)	781, 791
PpsI	GAGTC	2 cut(s)	781, 791
PshBI	ATTAAT	1 cut(s)	915
Psp124BI	GAGCTC	1 cut(s)	879
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	78, 594, 720
PteI	GCGCGC	1 cut(s)	661
RsaI	GTAC	3 cut(s)	261, 1085, 1140
RsaNI	GTAC	3 cut(s)	260, 1084, 1139
SacI	GAGCTC	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	4 cut(s)	545, 890, 915, 1050
SatI	GCNGC	2 cut(s)	607, 923
SchI	GAGTC	2 cut(s)	782, 792
ScrFI	CCNGG	2 cut(s)	88, 290
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	5 cut(s)	154, 299, 521, 577, 703
SsiI	CCGC	2 cut(s)	607, 920
SspMI	CTAG	1 cut(s)	1067
SstI	GAGCTC	1 cut(s)	879
StyD4I	CCNGG	2 cut(s)	86, 288
StyI	CCWWGG	2 cut(s)	570, 626
TaaI	ACNGT	2 cut(s)	238, 944
TasI	AATT	5 cut(s)	154, 299, 521, 577, 703
TatI	WGTACW	1 cut(s)	1083
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	3 cut(s)	205, 509, 1108
Tru1I	TTAA	4 cut(s)	545, 890, 915, 1050
Tru9I	TTAA	4 cut(s)	545, 890, 915, 1050
TscAI	CASTG	2 cut(s)	241, 282
TseFI	GTSAC	3 cut(s)	28, 500, 997
TseI	GCWGC	1 cut(s)	922
Tsp45I	GTSAC	3 cut(s)	28, 500, 997
TspDTI	ATGAA	7 cut(s)	51, 197, 492, 824, 833, 872, 1161
TspRI	CASTG	2 cut(s)	241, 282
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	1 cut(s)	703
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	1 cut(s)	1067
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.