FvH4_5g11291

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
6402432 .. 6404681
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11291.t1

Sequence Viewer

Length: 1470 bp
ATGGCTCAACAGAAGGAACTGAGAAGTGTGACTGAGTGGAGAATAAAAATGACAGATGGTTCATCTGAAGCTTTGGCGCCAGAAGCCGGGCTTGCCTGCCGAGCTTGGCTTGCTGTGAAGGGTCTGATTATGGGGTTGATCTTGAAAGTATGCAATTTCTTCGAGAAAGCTTGGAATTTGGGACAAAATGAGCCTAGGAAAGTGATTCATTGTTTGAAAGTAGGGATGGCACTCACTGTTGTTTCACTGTTTTATTATATGAGACCTTTGTATGAAGGTATGGGAGGAAATGCTATGTGGGCAGTCATGACTATTGTGGTTGTCTTTGAAAACACAGTTGGGGCAACAATATGTAAATGTTTAAACAGAATTTGTGGAACCTTTATTGCTGGTTCCCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTTGAGCCTTTCATCAATGGGATTTCTGTATTCTTGTTAGCTTCTGCAGTTACCTTCTCAAGATTCATACCATCAGTGAAAAAGCGATTTGATTATGGTGCGATGATCTTCATCCTCACATTCAGTTTAGTTACAGTGTCAGGCTACCGGGTGGATAAATTATTGGAATTGGCCAACAATAGAGTCTACACCATCATCATTGGAACTGCATTGTGCATTATGATAACCATGATTATTTGTCCCATTTGGGCTGGGGAGGAACTATATATGCTCATCACTCGAAACATGGACAAACTTGCCTATTCCTTAGATGGTTGTGTTGGAGAGTATTTCAATGATAGTGGAAGCTCTTCTGATGATGACAAGGAATGTGATAAGAAATTTCTTGGCTACAAATGTGTTTTAACCTCCAAAGCAACAGAAGAAGCCATGGCTAATTTTGCAAGGTGGGAGCCTGCACATGGCCGCTTCAACTTCAGACATCCATGGAAACAATACCTCAAAGTCGGGGCATCAATGCGTGCTTGTGCCTATTGCATCGATGCCCTTGATGGTTGTGTGAATTCCGAAAATGAGGTTCCTGAGTCGATGAAGAAGCATATGAGCAACATTGCTTTGAAAGTGAGCTCTGAGTCTTCAAGAGTCATAAAAGAGCTTGCAAGGACTATGAAGACAATGACGAAATCATCTACTGTAGATTATTTAGTTGGAGAGATGAACAATGCAGTCTTGGAGCTTCAGGAGGACTTAAAATCTCTTCCTACTTCATTTATTAATCCGCAGCCACTACAAGGAGCCGACTGTCCTGAAAAAAAGAAAACCAGAACAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAACTTCTTTACTCATTGAGATTACTACAAGGATTGAAGGCATGGTTAATGAAGTTGAAGAACTAGCTGAGATGGGTGAGTACAAGTCTGTTGCAGATGAGAAGAATCAAAAACAGCCAGCAGTTAGTAAAACTAATGTACCAGATGAACATAAGGAAGAGGTGTGA

Protein Analysis

490

Amino Acids

54.57

Weight (kDa)

6.38

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 58 - 408 5.6e-148 Aluminium activated malate transporter
FUSC_2 PF13515 90 - 222 1.5e-10 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 627
AciI CCGC 2 cut(s) 907, 1220
AcoI YGGCCR 2 cut(s) 612, 904
AcsI RAATTY 5 cut(s) 175, 369, 440, 821, 1003
AcuI CTGAAG 3 cut(s) 87, 901, 1163
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 2 cut(s) 1385, 1443
AfiI CCNNNNNNNGG 3 cut(s) 86, 902, 1232
AgsI TTSAA 9 cut(s) 145, 217, 329, 775, 913, 1060, 1080, 1340, 1361
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 9 cut(s) 71, 104, 170, 482, 789, 1068, 1096, 1177, 1370
AluI AGCT 9 cut(s) 71, 104, 170, 482, 789, 1068, 1096, 1177, 1370
Alw21I GWGCWC 1 cut(s) 1070
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 2 cut(s) 612, 904
ApeKI GCWGC 1 cut(s) 1222
ApoI RAATTY 5 cut(s) 175, 369, 440, 821, 1003
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 790
AspA2I CCTAGG 1 cut(s) 194
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 88, 590
AsuHPI GGTGA 1 cut(s) 1391
AvrII CCTAGG 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 1425, 1458
BalI TGGCCA 1 cut(s) 614
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 1070
BbsI GAAGAC 2 cut(s) 1068, 1118
Bbv12I GWGCWC 1 cut(s) 1070
BbvI GCAGC 1 cut(s) 1234
BccI CCATC 7 cut(s) 50, 220, 520, 641, 746, 986, 1369
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcnI CCSGG 2 cut(s) 88, 590
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 2 cut(s) 195, 1367
BfmI CTRYAG 2 cut(s) 486, 1134
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 2 cut(s) 907, 1223
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 2 cut(s) 908, 1224
Bme1390I CCNGG 2 cut(s) 88, 590
BmiI GGNNCC 6 cut(s) 78, 379, 394, 894, 1020, 1237
BmrFI CCNGG 2 cut(s) 88, 590
BmsI GCATC 4 cut(s) 417, 962, 973, 987
BpiI GAAGAC 2 cut(s) 1068, 1118
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 2 cut(s) 88, 590
Bsa29I ATCGAT 1 cut(s) 981
BsaBI GATNNNNATC 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 194, 870, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 902, 1232
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 1 cut(s) 551
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 194, 870, 926
BseGI GGATG 4 cut(s) 231, 408, 552, 922
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 3 cut(s) 86, 902, 1232
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 5 cut(s) 11, 24, 1014, 1062, 1362
BseXI GCAGC 1 cut(s) 1234
BseYI CCCAGC 1 cut(s) 692
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 2 cut(s) 614, 906
BshNI GGYRCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 981
BsiHKAI GWGCWC 1 cut(s) 1070
BsiSI CCGG 2 cut(s) 87, 589
BslFI GGGAC 2 cut(s) 195, 666
BslI CCNNNNNNNGG 3 cut(s) 86, 902, 1232
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 195, 666
BsnI GGCC 2 cut(s) 614, 906
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 1070
Bsp143I GATC 2 cut(s) 138, 546
Bsp19I CCATGG 2 cut(s) 870, 926
BspACI CCGC 2 cut(s) 907, 1220
BspANI GGCC 2 cut(s) 614, 906
BspCNI CTCAG 5 cut(s) 12, 25, 1015, 1063, 1363
BspDI ATCGAT 1 cut(s) 981
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 6 cut(s) 78, 379, 394, 894, 1020, 1237
BspMAI CTGCAG 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 796
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 1050
BssECI CCNNGG 3 cut(s) 194, 870, 926
BssMI GATC 2 cut(s) 138, 546
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 3 cut(s) 194, 870, 926
Bst4CI ACNGT 7 cut(s) 238, 249, 337, 577, 1135, 1244, 1270
Bst6I CTCTTC 3 cut(s) 796, 1203, 1455
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 7 cut(s) 93, 97, 111, 897, 963, 1098, 1422
BstDEI CTNAG 6 cut(s) 20, 33, 748, 1023, 1071, 1371
BstDSI CCRYGG 2 cut(s) 870, 926
BstF5I GGATG 4 cut(s) 231, 408, 552, 922
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 141, 549
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 138, 546
BstMWI GCNNNNNNNGC 6 cut(s) 83, 92, 101, 110, 299, 881
BstSCI CCNGG 2 cut(s) 86, 588
BstSFI CTRYAG 2 cut(s) 486, 1134
BstV1I GCAGC 1 cut(s) 1234
BstV2I GAAGAC 2 cut(s) 1068, 1118
Bsu15I ATCGAT 1 cut(s) 981
BsuRI GGCC 2 cut(s) 614, 906
BsuTUI ATCGAT 1 cut(s) 981
BtgI CCRYGG 2 cut(s) 870, 926
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 4 cut(s) 231, 408, 552, 922
BtsIMutI CAGTG 4 cut(s) 234, 245, 522, 582
Cac8I GCNNGC 7 cut(s) 93, 97, 111, 897, 963, 1098, 1422
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 981
Csp6I GTAC 2 cut(s) 1384, 1442
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 9 cut(s) 307, 670, 727, 871, 902, 927, 1279, 1288, 1345
CviQI GTAC 2 cut(s) 1384, 1442
DdeI CTNAG 6 cut(s) 20, 33, 748, 1023, 1071, 1371
DinI GGCGCC 1 cut(s) 78
DpnI GATC 2 cut(s) 140, 548
DpnII GATC 2 cut(s) 138, 546
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 2 cut(s) 612, 904
Eam1104I CTCTTC 3 cut(s) 796, 1203, 1455
EarI CTCTTC 3 cut(s) 796, 1203, 1455
Ecl136II GAGCTC 1 cut(s) 1068
Eco130I CCWWGG 3 cut(s) 194, 870, 926
Eco24I GRGCYC 1 cut(s) 1070
Eco31I GGTCTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 1285
Eco53kI GAGCTC 1 cut(s) 1068
Eco57I CTGAAG 3 cut(s) 87, 901, 1163
EcoICRI GAGCTC 1 cut(s) 1068
EcoRI GAATTC 1 cut(s) 1003
EcoRV GATATC 1 cut(s) 1285
EcoT14I CCWWGG 3 cut(s) 194, 870, 926
EcoT38I GRGCYC 1 cut(s) 1070
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 3 cut(s) 194, 870, 926
FaeI CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 195, 666
FatI CATG 9 cut(s) 306, 669, 726, 870, 901, 926, 1278, 1287, 1344
FauNDI CATATG 1 cut(s) 1041
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 907, 1223
FokI GGATG 4 cut(s) 238, 395, 539, 909
FriOI GRGCYC 1 cut(s) 1070
Fsp4HI GCNGC 2 cut(s) 907, 1223
FspBI CTAG 2 cut(s) 195, 1367
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 907, 1223
GsaI CCCAGC 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 2 cut(s) 614, 906
HapII CCGG 2 cut(s) 87, 589
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 2 cut(s) 69, 168
HinfI GANTC 8 cut(s) 205, 424, 504, 624, 1025, 1073, 1083, 1408
HpaII CCGG 2 cut(s) 87, 589
HphI GGTGA 1 cut(s) 1391
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 6 cut(s) 67, 126, 796, 920, 1009, 1072
Hpy188III TCNNGA 9 cut(s) 142, 163, 307, 432, 501, 1022, 1080, 1181, 1247
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 5 cut(s) 7, 112, 269, 505, 1334
HpyCH4III ACNGT 7 cut(s) 238, 249, 337, 577, 1135, 1244, 1270
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 92, 101, 110, 299, 881
HpyF3I CTNAG 6 cut(s) 20, 33, 748, 1023, 1071, 1371
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
HspAI GCGC 1 cut(s) 77
KasI GGCGCC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 138, 546
LguI GCTCTTC 1 cut(s) 796
LmnI GCTCC 3 cut(s) 892, 1174, 1235
Lsp1109I GCAGC 1 cut(s) 1234
LweI GCATC 4 cut(s) 417, 962, 973, 987
MaeI CTAG 2 cut(s) 195, 1367
MaeIII GTNAC 4 cut(s) 28, 490, 571, 1297
MalI GATC 2 cut(s) 140, 548
MboI GATC 2 cut(s) 138, 546
MhlI GDGCHC 1 cut(s) 1070
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 9 cut(s) 154, 175, 369, 440, 599, 608, 821, 877, 1003
MluNI TGGCCA 1 cut(s) 614
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 5 cut(s) 433, 633, 1034, 1082, 1092
MmeI TCCRAC 2 cut(s) 742, 1129
MnlI CCTC 8 cut(s) 278, 566, 691, 859, 950, 1009, 1177, 1456
Mox20I TGGCCA 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 790
MscI TGGCCA 1 cut(s) 614
MseI TTAA 6 cut(s) 362, 845, 1190, 1215, 1304, 1350
Msp20I TGGCCA 1 cut(s) 614
MspI CCGG 2 cut(s) 87, 589
MspR9I CCNGG 2 cut(s) 88, 590
MssI GTTTAAAC 1 cut(s) 363
MwoI GCNNNNNNNGC 6 cut(s) 83, 92, 101, 110, 299, 881
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 2 cut(s) 88, 590
NcoI CCATGG 2 cut(s) 870, 926
NdeI CATATG 1 cut(s) 1041
NdeII GATC 2 cut(s) 138, 546
NlaIII CATG 9 cut(s) 310, 673, 730, 874, 905, 930, 1282, 1291, 1348
NlaIV GGNNCC 6 cut(s) 78, 379, 394, 894, 1020, 1237
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 28, 1297
PagI TCATGA 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 205, 504, 1408
PkrI GCNGC 2 cut(s) 908, 1224
PleI GAGTC 5 cut(s) 432, 632, 1033, 1081, 1091
PluTI GGCGCC 1 cut(s) 80
PmeI GTTTAAAC 1 cut(s) 363
PpsI GAGTC 5 cut(s) 432, 632, 1033, 1081, 1091
PshBI ATTAAT 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 1070
PspFI CCCAGC 1 cut(s) 692
PspN4I GGNNCC 6 cut(s) 78, 379, 394, 894, 1020, 1237
PstI CTGCAG 1 cut(s) 490
RsaI GTAC 2 cut(s) 1385, 1443
RsaNI GTAC 2 cut(s) 1384, 1442
SacI GAGCTC 1 cut(s) 1070
SapI GCTCTTC 1 cut(s) 796
SaqAI TTAA 6 cut(s) 362, 845, 1190, 1215, 1304, 1350
SatI GCNGC 2 cut(s) 907, 1223
Sau3AI GATC 2 cut(s) 138, 546
SchI GAGTC 5 cut(s) 433, 633, 1034, 1082, 1092
ScrFI CCNGG 2 cut(s) 88, 590
SduI GDGCHC 1 cut(s) 1070
SfaNI GCATC 4 cut(s) 417, 962, 973, 987
SfcI CTRYAG 2 cut(s) 486, 1134
SfoI GGCGCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 9 cut(s) 154, 175, 369, 440, 599, 608, 821, 877, 1003
SsiI CCGC 2 cut(s) 907, 1220
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 2 cut(s) 195, 1367
SstI GAGCTC 1 cut(s) 1070
StyD4I CCNGG 2 cut(s) 86, 588
StyI CCWWGG 3 cut(s) 194, 870, 926
TaaI ACNGT 7 cut(s) 238, 249, 337, 577, 1135, 1244, 1270
TaqI TCGA 4 cut(s) 162, 721, 981, 1028
TasI AATT 9 cut(s) 154, 175, 369, 440, 599, 608, 821, 877, 1003
TatI WGTACW 1 cut(s) 1383
TauI GCSGC 1 cut(s) 909
TfiI GAWTC 3 cut(s) 205, 504, 1408
Tru1I TTAA 6 cut(s) 362, 845, 1190, 1215, 1304, 1350
Tru9I TTAA 6 cut(s) 362, 845, 1190, 1215, 1304, 1350
TscAI CASTG 4 cut(s) 241, 252, 522, 582
TseFI GTSAC 2 cut(s) 28, 1297
TseI GCWGC 1 cut(s) 1222
Tsp45I GTSAC 2 cut(s) 28, 1297
TspRI CASTG 4 cut(s) 241, 252, 522, 582
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 5 cut(s) 175, 369, 440, 821, 1003
XmaJI CCTAGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 790
XspI CTAG 2 cut(s) 195, 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.