Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

48532020 .. 48534047

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGGTGACTGAGTGGAGAATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCAGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGGTTTTGAAAGTGTGCAATTTCTTCAGGAAAGCTTGGGATTTGGGACGAAATGAGCCTAAAAAAGTGATTCATTGTTTGAAAGTAGGGATGGCACTCACTGTTGTTTCACTGTTTTACTACATGAGACCTTTGTACGAAGGTATGGGAGGAAATGCTATGTGGGCAGTTATTACTGTTGTGGTTGTCTTTGAAAACACAGTGGGTGCAACAATATGTAAAAGTTTAAACAGAATCTGTGGAACTTTTGTGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTCGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGGTTGTGTTGGAGAGTATTTCAATGATAGCGGAAGCTCTTCTGATGGTGACAAGGAATCTGATAAGAAATTGATTGGCTACAAATGTGTTTTAACCTCAAAAGCAACAGAAGAAACCATGGCTAATTTTGCAAGATGGGAGCCTGCACATGGCCGCTTCAACTCCAGACATCTATGGAAACAATACCTCAAAATCGGCGCATCAATGCGTGCTTGTGCTTATTGCATTGACGCCCTTGATGGTTGTGTGAATTCCGAAAATGAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAACATTGCTTTGAAAGTAAGCTCTGAGTCTTCAAGAGTCATAAAAGAGCTTGCAAGAACTATGAAGGCAATGAAGAAATCATCTACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGAAGCTCCAAGAGGACTTAAAATCTCTTCCTACTTTATTTATTAATCCGCAGCCACTGCAAGGAGCTGACTGTCCTGAAAAAAGGAACCCAGGAGCAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAGCTTCCTTACTGATTGAGATTGCTACAAGGATTGAAGGCATGGTTAATGCCGTTGAGGAACTAGCTGAGATGGGTGAGTACAAGTCTGTTGCAGATGAGAAGAATCAAAACCAGCCTGTTAGTAAAACTAATGTACCTGCAGATGAGCATAAGGAAGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

398

Amino Acids

43.89

Weight (kDa)

6.99

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 166	1.8e-45	Aluminium activated malate transporter
FUSC_2	PF13515	90 - 168	2.8e-07	Fusaric acid resistance protein-like
FUSC	PF04632	97 - 143	1e-05	Fusaric acid resistance protein family
ALMT	PF11744	159 - 318	1.2e-42	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1177
AciI	CCGC	3 cut(s)	510, 634, 947
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	2 cut(s)	440, 730
AcuI	CTGAAG	3 cut(s)	87, 137, 145
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	3 cut(s)	272, 1112, 1167
AfiI	CCNNNNNNNGG	3 cut(s)	86, 629, 959
AgsI	TTSAA	9 cut(s)	145, 217, 329, 502, 640, 787, 807, 901, 1067
AjnI	CCWGG	1 cut(s)	988
Alw26I	GTCTC	1 cut(s)	256
AlwNI	CAGNNNCTG	2 cut(s)	372, 955
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	1 cut(s)	949
ApoI	RAATTY	2 cut(s)	440, 730
AseI	ATTAAT	1 cut(s)	942
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	40, 539, 1118
BaeI	ACNNNNGTAYC	2 cut(s)	1149, 1182
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	1 cut(s)	961
BccI	CCATC	6 cut(s)	50, 220, 518, 609, 713, 1096
BceAI	ACGGC	1 cut(s)	1067
BciT130I	CCWGG	1 cut(s)	990
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	1094
BfmI	CTRYAG	2 cut(s)	861, 1170
BfuAI	ACCTGC	1 cut(s)	1177
BisI	GCNGC	2 cut(s)	634, 950
BlsI	GCNGC	2 cut(s)	635, 951
Bme1390I	CCNGG	1 cut(s)	990
BmiI	GGNNCC	4 cut(s)	78, 621, 747, 986
BmrFI	CCNGG	1 cut(s)	990
BmsI	GCATC	2 cut(s)	417, 689
BpiI	GAAGAC	1 cut(s)	795
BpmI	CTGGAG	2 cut(s)	63, 628
BsaHI	GRCGYC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	597, 988
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 629, 959
Bse3DI	GCAATG	2 cut(s)	777, 849
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	2 cut(s)	597, 988
BseGI	GGATG	2 cut(s)	231, 408
BseLI	CCNNNNNNNGG	3 cut(s)	86, 629, 959
BseMI	GCAATG	2 cut(s)	777, 849
BseMII	CTCAG	4 cut(s)	24, 741, 789, 1089
BseXI	GCAGC	1 cut(s)	961
BsgI	GTGCAG	1 cut(s)	609
BshFI	GGCC	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	86, 629, 959
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	3 cut(s)	510, 634, 947
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	4 cut(s)	25, 742, 790, 1090
BspLI	GGNNCC	4 cut(s)	78, 621, 747, 986
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	1177
BspQI	GCTCTTC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	777, 849
BssECI	CCNNGG	2 cut(s)	597, 988
BssNI	GRCGYC	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	5 cut(s)	238, 249, 313, 337, 971
Bst6I	CTCTTC	2 cut(s)	523, 930
BstACI	GRCGYC	1 cut(s)	711
BstAPI	GCANNNNNTGC	2 cut(s)	92, 955
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 624, 690, 825
BstDEI	CTNAG	4 cut(s)	33, 750, 798, 1098
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	231, 408
BstHHI	GCGC	1 cut(s)	680
BstMAI	GTCTC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 92, 101, 110, 299, 608, 955
BstNI	CCWGG	1 cut(s)	990
BstSCI	CCNGG	1 cut(s)	988
BstSFI	CTRYAG	2 cut(s)	861, 1170
BstV1I	GCAGC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	795
BsuRI	GGCC	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	231, 408
BtsI	GCAGTG	1 cut(s)	953
BtsIMutI	CAGTG	4 cut(s)	234, 245, 342, 953
BveI	ACCTGC	1 cut(s)	1177
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 624, 690, 825
CaiI	CAGNNNCTG	2 cut(s)	372, 955
CfoI	GCGC	1 cut(s)	680
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	3 cut(s)	271, 1111, 1166
CviAII	CATG	6 cut(s)	259, 598, 629, 1006, 1015, 1072
CviQI	GTAC	3 cut(s)	271, 1111, 1166
DdeI	CTNAG	4 cut(s)	33, 750, 798, 1098
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	523, 930
EarI	CTCTTC	2 cut(s)	523, 930
Eco130I	CCWWGG	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	1012
Eco57I	CTGAAG	3 cut(s)	87, 137, 145
EcoRI	GAATTC	2 cut(s)	440, 730
EcoRII	CCWGG	1 cut(s)	988
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	6 cut(s)	262, 601, 632, 1009, 1018, 1075
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	6 cut(s)	258, 597, 628, 1005, 1014, 1071
FauNDI	CATATG	1 cut(s)	768
Fnu4HI	GCNGC	2 cut(s)	634, 950
FokI	GGATG	2 cut(s)	238, 395
Fsp4HI	GCNGC	2 cut(s)	634, 950
FspBI	CTAG	1 cut(s)	1094
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	2 cut(s)	634, 950
GsuI	CTGGAG	2 cut(s)	63, 628
HaeIII	GGCC	1 cut(s)	633
HgaI	GACGC	1 cut(s)	719
HhaI	GCGC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	6 cut(s)	262, 601, 632, 1009, 1018, 1075
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	7 cut(s)	205, 369, 424, 536, 800, 810, 1135
HphI	GGTGA	3 cut(s)	40, 539, 1118
Hpy188I	TCNGA	7 cut(s)	67, 117, 126, 523, 541, 736, 799
Hpy188III	TCNNGA	9 cut(s)	8, 80, 163, 432, 645, 749, 807, 898, 974
HpyAV	CCTTC	5 cut(s)	7, 112, 269, 832, 1061
HpyCH4III	ACNGT	5 cut(s)	238, 249, 313, 337, 971
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 92, 101, 110, 299, 608, 955
HpyF3I	CTNAG	4 cut(s)	33, 750, 798, 1098
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	6 cut(s)	262, 601, 632, 1009, 1018, 1075
HspAI	GCGC	1 cut(s)	678
LguI	GCTCTTC	1 cut(s)	523
LmnI	GCTCC	5 cut(s)	82, 619, 909, 962, 992
Lsp1109I	GCAGC	1 cut(s)	961
LweI	GCATC	2 cut(s)	417, 689
MaeI	CTAG	1 cut(s)	1094
MaeIII	GTNAC	3 cut(s)	28, 527, 1024
MboII	GAAGA	7 cut(s)	151, 510, 602, 795, 859, 917, 1144
MluCI	AATT	5 cut(s)	154, 440, 548, 604, 730
MlyI	GAGTC	3 cut(s)	433, 809, 819
MmeI	TCCRAC	2 cut(s)	469, 856
MnlI	CCTC	6 cut(s)	278, 586, 677, 736, 904, 1081
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	5 cut(s)	362, 572, 917, 942, 1077
MspR9I	CCNGG	1 cut(s)	990
MssI	GTTTAAAC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	7 cut(s)	83, 92, 101, 110, 299, 608, 955
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	768
NlaIII	CATG	6 cut(s)	262, 601, 632, 1009, 1018, 1075
NlaIV	GGNNCC	4 cut(s)	78, 621, 747, 986
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 527, 1024
PciSI	GCTCTTC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	205, 369, 536, 1135
PkrI	GCNGC	2 cut(s)	635, 951
PleI	GAGTC	3 cut(s)	432, 808, 818
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	3 cut(s)	432, 808, 818
PshBI	ATTAAT	1 cut(s)	942
Psp6I	CCWGG	1 cut(s)	988
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	4 cut(s)	78, 621, 747, 986
PstI	CTGCAG	1 cut(s)	1174
PstNI	CAGNNNCTG	2 cut(s)	372, 955
RsaI	GTAC	3 cut(s)	272, 1112, 1167
RsaNI	GTAC	3 cut(s)	271, 1111, 1166
SapI	GCTCTTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	362, 572, 917, 942, 1077
SatI	GCNGC	2 cut(s)	634, 950
SchI	GAGTC	3 cut(s)	433, 809, 819
ScrFI	CCNGG	1 cut(s)	990
SfaNI	GCATC	2 cut(s)	417, 689
SfcI	CTRYAG	2 cut(s)	861, 1170
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	5 cut(s)	154, 440, 548, 604, 730
SsiI	CCGC	3 cut(s)	510, 634, 947
SspMI	CTAG	1 cut(s)	1094
StyD4I	CCNGG	1 cut(s)	988
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	5 cut(s)	238, 249, 313, 337, 971
TaqI	TCGA	1 cut(s)	444
TasI	AATT	5 cut(s)	154, 440, 548, 604, 730
TatI	WGTACW	1 cut(s)	1110
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	4 cut(s)	205, 369, 536, 1135
Tru1I	TTAA	5 cut(s)	362, 572, 917, 942, 1077
Tru9I	TTAA	5 cut(s)	362, 572, 917, 942, 1077
TscAI	CASTG	4 cut(s)	241, 252, 342, 960
TseFI	GTSAC	3 cut(s)	28, 527, 1024
TseI	GCWGC	1 cut(s)	949
Tsp45I	GTSAC	3 cut(s)	28, 527, 1024
TspDTI	ATGAA	6 cut(s)	51, 197, 442, 851, 860, 899
TspRI	CASTG	4 cut(s)	241, 252, 342, 960
VspI	ATTAAT	1 cut(s)	942
XapI	RAATTY	2 cut(s)	440, 730
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.