Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

1873906 .. 1875364

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGGTGACTGAGTGGAGAATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCAGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGGTTTTGAAAGTGTGCAATTTCTTCAGGAAAGCTTGGGATTTGGGACGAAATGAGCCTAAAAAAGTGATTCATTGTTTGAAAGTAGGGATGGCACTCACTGTTGTTTCACTGTTTTACTACATGAGACCTTTGTACGAAGGTATGGGAGGAAATGCTATGTGGGCAGTTATTACTGTTGTGGTTGTCTTTGAAAACACAGTGGGTGCAACAATATGTGAAAGTTTAAACAGAATTTGCGGAACTTTTATGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTCGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGCTTCTGCAGTTACCTTCTCAAGATTTATCCCATCGGTGAAAAAGCGATTTGATTATGGTGCAATGATCTTCGTCCTCACATTCAGTTTAGTTACAGTGTCGGGTTACGGCCGGGTGGATAAATTATTGGAAATGACCAACGATAGAGTATACACCATCATCATTGGGACTTCATTGTGCATTATGATAACCATGATTATTTGCCCCATTTGGGCTGGGGAGGGACTCTATATGCTCATCACTCGAACATGGACAAACTTGCATATTCGTTGTGTTGGAGAGTATTTCAATGATAGCAGAAGCTCTTCTGATGGTGACAAGGAATCTGATAAGAAATTGCTTGGCTACAAATGTGTTTTAACATCAAAAGCTACAGAAGAAACCATGGCTAATTTTGCAAGATGGGAGCCTGCACTTGGCCGCTTCAACTCCAGACATCTATGGAAACAATACCTCAAAATTGGCGCATCAATGCGTGCTTGTGCTTATTGCATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

326

Amino Acids

36.55

Weight (kDa)

8.99

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 325	5.8e-108	Aluminium activated malate transporter
FUSC_2	PF13515	90 - 222	7.1e-10	Fusaric acid resistance protein-like
FUSC	PF04632	97 - 237	3.6e-06	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	2 cut(s)	375, 901
AcoI	YGGCCR	2 cut(s)	589, 898
AcsI	RAATTY	2 cut(s)	369, 440
AcuI	CTGAAG	3 cut(s)	87, 137, 145
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	86, 691, 896
AgsI	TTSAA	5 cut(s)	145, 217, 329, 769, 907
AluBI	AGCT	6 cut(s)	71, 104, 170, 482, 783, 851
AluI	AGCT	6 cut(s)	71, 104, 170, 482, 783, 851
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	2 cut(s)	589, 898
ApoI	RAATTY	2 cut(s)	369, 440
Asp700I	GAANNNNTTC	1 cut(s)	784
AspLEI	GCGC	1 cut(s)	947
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	3 cut(s)	40, 529, 806
BccI	CCATC	6 cut(s)	50, 220, 520, 644, 785, 876
BceAI	ACGGC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	256
BfmI	CTRYAG	2 cut(s)	486, 852
BisI	GCNGC	1 cut(s)	901
BlsI	GCNGC	1 cut(s)	902
Bme1390I	CCNGG	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	78, 888
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	417, 956
BpmI	CTGGAG	2 cut(s)	63, 895
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	864
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 691, 896
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	2 cut(s)	231, 408
BseLI	CCNNNNNNNGG	3 cut(s)	86, 691, 896
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	589
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	876
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	591, 900
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	3 cut(s)	195, 661, 717
BslI	CCNNNNNNNGG	3 cut(s)	86, 691, 896
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	3 cut(s)	195, 661, 717
BsnI	GGCC	2 cut(s)	591, 900
Bso31I	GGTCTC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	2 cut(s)	375, 901
BspANI	GGCC	2 cut(s)	591, 900
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	78, 888
BspMAI	CTGCAG	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	790
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	1 cut(s)	546
BssNAI	GTATAC	1 cut(s)	631
BssT1I	CCWWGG	1 cut(s)	864
Bst1107I	GTATAC	1 cut(s)	631
Bst4CI	ACNGT	5 cut(s)	238, 249, 313, 337, 577
Bst6I	CTCTTC	1 cut(s)	790
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	6 cut(s)	93, 97, 111, 391, 891, 957
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	2 cut(s)	231, 408
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	546
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 875
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	2 cut(s)	486, 852
BstZ17I	GTATAC	1 cut(s)	631
BstZI	CGGCCG	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	591, 900
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	2 cut(s)	231, 408
BtsIMutI	CAGTG	4 cut(s)	234, 245, 342, 582
Cac8I	GCNNGC	6 cut(s)	93, 97, 111, 391, 891, 957
CfoI	GCGC	1 cut(s)	947
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	4 cut(s)	259, 673, 729, 865
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	589, 898
EagI	CGGCCG	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	790
EarI	CTCTTC	1 cut(s)	790
EclXI	CGGCCG	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	589
Eco57I	CTGAAG	3 cut(s)	87, 137, 145
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	4 cut(s)	262, 676, 732, 868
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	3 cut(s)	195, 661, 717
FatI	CATG	4 cut(s)	258, 672, 728, 864
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	1 cut(s)	901
FokI	GGATG	2 cut(s)	238, 395
Fsp4HI	GCNGC	1 cut(s)	901
GlaI	GCGC	1 cut(s)	946
GluI	GCNGC	1 cut(s)	901
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	63, 895
HaeIII	GGCC	2 cut(s)	591, 900
HapII	CCGG	1 cut(s)	592
HhaI	GCGC	1 cut(s)	947
Hin1II	CATG	4 cut(s)	262, 676, 732, 868
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	4 cut(s)	205, 424, 705, 803
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	3 cut(s)	40, 529, 806
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	5 cut(s)	67, 117, 126, 790, 808
Hpy188III	TCNNGA	6 cut(s)	8, 80, 163, 432, 501, 912
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	4 cut(s)	7, 112, 269, 505
HpyCH4III	ACNGT	5 cut(s)	238, 249, 313, 337, 577
HpyCH4V	TGCA	9 cut(s)	153, 344, 488, 542, 660, 742, 878, 893, 972
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 875
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	262, 676, 732, 868
HspAI	GCGC	1 cut(s)	945
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	790
LmnI	GCTCC	2 cut(s)	82, 886
LweI	GCATC	2 cut(s)	417, 956
MaeIII	GTNAC	5 cut(s)	28, 490, 571, 584, 794
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	4 cut(s)	151, 541, 777, 869
MluCI	AATT	7 cut(s)	154, 369, 440, 602, 815, 871, 939
MlyI	GAGTC	2 cut(s)	433, 699
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	4 cut(s)	278, 566, 694, 944
MroXI	GAANNNNTTC	1 cut(s)	784
MseI	TTAA	2 cut(s)	362, 839
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	593
MssI	GTTTAAAC	1 cut(s)	363
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 875
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	4 cut(s)	262, 676, 732, 868
NlaIV	GGNNCC	2 cut(s)	78, 888
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	28, 794
PciSI	GCTCTTC	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	205, 803
PkrI	GCNGC	1 cut(s)	902
PleI	GAGTC	2 cut(s)	432, 699
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	2 cut(s)	432, 699
PspFI	CCCAGC	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	78, 888
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	790
SaqAI	TTAA	2 cut(s)	362, 839
SatI	GCNGC	1 cut(s)	901
Sau3AI	GATC	1 cut(s)	546
SchI	GAGTC	2 cut(s)	433, 699
ScrFI	CCNGG	1 cut(s)	593
SfaNI	GCATC	2 cut(s)	417, 956
SfcI	CTRYAG	2 cut(s)	486, 852
SmlI	CTYRAG	2 cut(s)	6, 499
SmoI	CTYRAG	2 cut(s)	6, 499
Sse9I	AATT	7 cut(s)	154, 369, 440, 602, 815, 871, 939
SsiI	CCGC	2 cut(s)	375, 901
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	5 cut(s)	238, 249, 313, 337, 577
TaqI	TCGA	2 cut(s)	444, 724
TasI	AATT	7 cut(s)	154, 369, 440, 602, 815, 871, 939
TauI	GCSGC	1 cut(s)	903
TfiI	GAWTC	2 cut(s)	205, 803
Tru1I	TTAA	2 cut(s)	362, 839
Tru9I	TTAA	2 cut(s)	362, 839
TscAI	CASTG	4 cut(s)	241, 252, 342, 582
TseFI	GTSAC	2 cut(s)	28, 794
Tsp45I	GTSAC	2 cut(s)	28, 794
TspDTI	ATGAA	4 cut(s)	51, 197, 442, 642
TspRI	CASTG	4 cut(s)	241, 252, 342, 582
XapI	RAATTY	2 cut(s)	369, 440
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.