Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005298.1

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Forward (+)

21833 .. 23861

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005298.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atggctcaagagaaggaaatgagcagggtgactgagtggagaataagaatggcagacggttcatctgaagctttggctccagaagcagggcttgcctgccgagcttggcttgctctgaagggtctgattatggggttggttttgaaagtgtgcaatttcttcaggaaagcttgggatttgggacgaaatgagcctaaaaaagtgattcattgtttgaaagtagggatggcactcactgttttactacatgagacctttgtacgaagtttagttacagtgtcgggttaccggctggataaattattggaaatggccaacgatagagtatacaccatcatcattgggacttcattgtgcattatgataaccatgatcatttgccccatttgggctggggagggactctatatgctcatcactcgaaacatggacaaacttgcctattcgttagatggttgtgttggagagtatttaaatgatagcggaagctcttctgatggtgacaaggaatctgataagaaattgattggctacaaatgtgttttaacctcaaaagcaacagaagaaaccatggctaattttgcaagatgggagcctgcacatggccgcttcaactccagacatctatggaaacaatacctcaaaatcggcgcatcaatgcgtgcttgtgcttattgcattgacgccctggatggttgtgtgaattccgaaaatgaggttcctgagttgataaagaagcatatcatgagcaacattgctttgaaagtaagctctgagtcttcaagagtcataaaagagcttgcaaggactatgaagacaatgaagaaatcatctactatagattatttagttggagaaatgaacaatgcagtcttgaagctccaagaggacttaaaatctcttcctactttatttattaatccgcagccactgcaaggagctgactgtcctgaaaaaaggaacccaggagcagttgctctcatgggtatcatgccacttgtgactttagcttccttactgattgagattgctacaaggattgaaggcatggttaatgccgttgaggaactagctgagatgggtgagtacaagtctgttgcagatgagaagaatcaaaaccagcctgttagtaaaactaatgtacctgcagatgagcataaggaagtggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

390

Amino Acids

43.32

Weight (kDa)

6.99

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1153
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	3 cut(s)	483, 607, 923
AcoI	YGGCCR	2 cut(s)	312, 604
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	3 cut(s)	87, 137, 145
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	3 cut(s)	261, 1088, 1143
AfiI	CCNNNNNNNGG	4 cut(s)	86, 388, 602, 935
AgsI	TTSAA	7 cut(s)	145, 217, 613, 763, 783, 877, 1043
AjnI	CCWGG	2 cut(s)	687, 964
Alw26I	GTCTC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	931
AoxI	GGCC	2 cut(s)	312, 604
ApeKI	GCWGC	1 cut(s)	925
ApoI	RAATTY	1 cut(s)	703
AseI	ATTAAT	1 cut(s)	918
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	653
AsuHPI	GGTGA	3 cut(s)	40, 512, 1094
BaeI	ACNNNNGTAYC	2 cut(s)	1125, 1158
BalI	TGGCCA	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	2 cut(s)	771, 821
BbvI	GCAGC	1 cut(s)	937
BccI	CCATC	7 cut(s)	220, 341, 446, 491, 582, 686, 1072
BceAI	ACGGC	1 cut(s)	1043
BciT130I	CCWGG	2 cut(s)	689, 966
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	1070
BfmI	CTRYAG	2 cut(s)	837, 1146
BfuAI	ACCTGC	1 cut(s)	1153
BisI	GCNGC	2 cut(s)	607, 926
BlsI	GCNGC	2 cut(s)	608, 927
Bme1390I	CCNGG	2 cut(s)	689, 966
BmiI	GGNNCC	4 cut(s)	78, 594, 720, 962
BmrFI	CCNGG	2 cut(s)	689, 966
BmsI	GCATC	1 cut(s)	662
BpiI	GAAGAC	2 cut(s)	771, 821
BpmI	CTGGAG	2 cut(s)	63, 601
BsaHI	GRCGYC	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	570, 687, 964
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 388, 602, 935
Bse118I	RCCGGY	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	689, 966
BseDI	CCNNGG	3 cut(s)	570, 687, 964
BseGI	GGATG	2 cut(s)	231, 697
BseLI	CCNNNNNNNGG	4 cut(s)	86, 388, 602, 935
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	4 cut(s)	24, 714, 765, 1065
BseXI	GCAGC	1 cut(s)	937
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	582
BshFI	GGCC	2 cut(s)	314, 606
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	3 cut(s)	195, 358, 414
BslI	CCNNNNNNNGG	4 cut(s)	86, 388, 602, 935
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	3 cut(s)	195, 358, 414
BsnI	GGCC	2 cut(s)	314, 606
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	3 cut(s)	483, 607, 923
BspANI	GGCC	2 cut(s)	314, 606
BspCNI	CTCAG	4 cut(s)	25, 715, 766, 1066
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	4 cut(s)	78, 594, 720, 962
BspMAI	CTGCAG	1 cut(s)	1150
BspMI	ACCTGC	1 cut(s)	1153
BspQI	GCTCTTC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	3 cut(s)	570, 687, 964
BssMI	GATC	1 cut(s)	372
BssNAI	GTATAC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	570
Bst1107I	GTATAC	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	689, 966
Bst4CI	ACNGT	4 cut(s)	59, 238, 277, 947
Bst6I	CTCTTC	2 cut(s)	496, 906
BstACI	GRCGYC	1 cut(s)	684
BstAPI	GCANNNNNTGC	2 cut(s)	92, 931
BstC8I	GCNNGC	6 cut(s)	93, 97, 111, 597, 663, 801
BstDEI	CTNAG	4 cut(s)	33, 723, 774, 1074
BstDSI	CCRYGG	1 cut(s)	570
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	231, 697
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 581, 931
BstNI	CCWGG	2 cut(s)	689, 966
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	687, 964
BstSFI	CTRYAG	2 cut(s)	837, 1146
BstV1I	GCAGC	1 cut(s)	937
BstV2I	GAAGAC	2 cut(s)	771, 821
BstZ17I	GTATAC	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	314, 606
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	231, 697
BtsI	GCAGTG	1 cut(s)	929
BtsIMutI	CAGTG	3 cut(s)	234, 282, 929
BveI	ACCTGC	1 cut(s)	1153
Cac8I	GCNNGC	6 cut(s)	93, 97, 111, 597, 663, 801
CaiI	CAGNNNCTG	1 cut(s)	931
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	653
Cfr10I	RCCGGY	1 cut(s)	288
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	260, 1087, 1142
CviAII	CATG	9 cut(s)	248, 370, 427, 571, 602, 745, 982, 991, 1048
CviQI	GTAC	3 cut(s)	260, 1087, 1142
DdeI	CTNAG	4 cut(s)	33, 723, 774, 1074
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	2 cut(s)	312, 604
Eam1104I	CTCTTC	2 cut(s)	496, 906
EarI	CTCTTC	2 cut(s)	496, 906
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	245
Eco57I	CTGAAG	3 cut(s)	87, 137, 145
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	687, 964
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	9 cut(s)	251, 373, 430, 574, 605, 748, 985, 994, 1051
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	3 cut(s)	195, 358, 414
FatI	CATG	9 cut(s)	247, 369, 426, 570, 601, 744, 981, 990, 1047
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	607, 926
FokI	GGATG	2 cut(s)	238, 704
Fsp4HI	GCNGC	2 cut(s)	607, 926
FspBI	CTAG	1 cut(s)	1070
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	2 cut(s)	607, 926
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	63, 601
HaeIII	GGCC	2 cut(s)	314, 606
HapII	CCGG	1 cut(s)	289
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	1 cut(s)	653
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	9 cut(s)	251, 373, 430, 574, 605, 748, 985, 994, 1051
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	6 cut(s)	205, 402, 509, 776, 786, 1111
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	3 cut(s)	40, 512, 1094
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	7 cut(s)	67, 117, 126, 496, 514, 709, 775
Hpy188III	TCNNGA	9 cut(s)	8, 80, 163, 618, 722, 745, 783, 874, 950
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	7, 112, 1037
HpyCH4III	ACNGT	4 cut(s)	59, 238, 277, 947
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 581, 931
HpyF3I	CTNAG	4 cut(s)	33, 723, 774, 1074
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	9 cut(s)	251, 373, 430, 574, 605, 748, 985, 994, 1051
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	372
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	5 cut(s)	82, 592, 885, 938, 968
Lsp1109I	GCAGC	1 cut(s)	937
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	1070
MaeIII	GTNAC	5 cut(s)	28, 271, 284, 500, 1000
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	8 cut(s)	151, 483, 575, 771, 826, 835, 893, 1120
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	5 cut(s)	154, 299, 521, 577, 703
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	396, 785, 795
MmeI	TCCRAC	2 cut(s)	442, 832
MnlI	CCTC	6 cut(s)	391, 559, 650, 709, 880, 1057
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	5 cut(s)	473, 545, 893, 918, 1053
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	689, 966
MvaI	CCWGG	2 cut(s)	689, 966
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 581, 931
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	9 cut(s)	251, 373, 430, 574, 605, 748, 985, 994, 1051
NlaIV	GGNNCC	4 cut(s)	78, 594, 720, 962
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 500, 1000
PagI	TCATGA	1 cut(s)	744
PciSI	GCTCTTC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	205, 509, 1111
PkrI	GCNGC	2 cut(s)	608, 927
PleI	GAGTC	3 cut(s)	396, 784, 794
PpsI	GAGTC	3 cut(s)	396, 784, 794
PshBI	ATTAAT	1 cut(s)	918
Psp6I	CCWGG	2 cut(s)	687, 964
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	687, 964
PspN4I	GGNNCC	4 cut(s)	78, 594, 720, 962
PstI	CTGCAG	1 cut(s)	1150
PstNI	CAGNNNCTG	1 cut(s)	931
RsaI	GTAC	3 cut(s)	261, 1088, 1143
RsaNI	GTAC	3 cut(s)	260, 1087, 1142
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	473, 545, 893, 918, 1053
SatI	GCNGC	2 cut(s)	607, 926
Sau3AI	GATC	1 cut(s)	372
SchI	GAGTC	3 cut(s)	396, 785, 795
ScrFI	CCNGG	2 cut(s)	689, 966
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	2 cut(s)	837, 1146
SmiI	ATTTAAAT	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	5 cut(s)	154, 299, 521, 577, 703
SsiI	CCGC	3 cut(s)	483, 607, 923
SspMI	CTAG	1 cut(s)	1070
StyD4I	CCNGG	2 cut(s)	687, 964
StyI	CCWWGG	1 cut(s)	570
SwaI	ATTTAAAT	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	59, 238, 277, 947
TaqI	TCGA	1 cut(s)	421
TasI	AATT	5 cut(s)	154, 299, 521, 577, 703
TatI	WGTACW	1 cut(s)	1086
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	3 cut(s)	205, 509, 1111
Tru1I	TTAA	5 cut(s)	473, 545, 893, 918, 1053
Tru9I	TTAA	5 cut(s)	473, 545, 893, 918, 1053
TscAI	CASTG	3 cut(s)	241, 282, 936
TseFI	GTSAC	3 cut(s)	28, 500, 1000
TseI	GCWGC	1 cut(s)	925
Tsp45I	GTSAC	3 cut(s)	28, 500, 1000
TspDTI	ATGAA	6 cut(s)	51, 197, 339, 827, 836, 875
TspRI	CASTG	3 cut(s)	241, 282, 936
VspI	ATTAAT	1 cut(s)	918
XapI	RAATTY	1 cut(s)	703
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.