Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Forward (+)

17297932 .. 17299164

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGTTGGAGTACTTTAAAGACAATGAAGCTGTGACTGAAGACAATTGTTCTACTAAGCAAATCAATGGGTATAAATGTGTGCTCGATTCGAAGGCAACAGAAGACAATATGGCTAAATTTGCAAGATGGGAGCCTGCACATGGAAGTTTCAACTTCAAACATCCATGGAAACAGTACCTCAAGATTGGCGCATCGATGCGCAGTTGTGCTTACTGCGTCGAGGCTCTCAGCGCTTGTATGGAGTCGGAAATTAAGATGCCGGCTGGAATCGGAAACCTAAAGAAGCATTTCAGCAATGCCTGTAAGACGACAAACAAACATTCTTCAAACATCTTGAGAGAACTGGCGAAAACAATTAAAACCATGAAAAAATCATCTGAGATTGACTCATTGGTTTGGGAAATGAACAAAGCAGTGCAGGAGCTTCAAAAATCTTTGAAATCTGTGCCTATCTGGCTTGTTTTACCGACATCAGAAGCTACCGACGATGATGGCAAAGGAGAGCCCATCGTAGCACCACTGGTGGAGGTTCTTCCGGTGACCACATTGGTGTCTTTGCTTATTGAAAATGCAGCAAGAATCAGTGGAATTGTTGATGCAGTCAATGAGCTTGCAGTCCAGGCAGATATGAAGCCTGCACCCCAAGGAAATAAAACGCAACACCAGCCCGGCGACAAGCCCTCCGCAGGAGAGAAACTTCCATTCAACGGGAATGTCACTGTGACAGTCCCCCATGCCAATTGCGCATTGCCGTATGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

256

Amino Acids

27.91

Weight (kDa)

6.99

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	203, 748
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AciI	CCGC	1 cut(s)	687
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	3 cut(s)	14, 179, 763
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	143, 689, 710
AgsI	TTSAA	7 cut(s)	154, 160, 330, 431, 442, 569, 709
AjnI	CCWGG	1 cut(s)	621
AleI	CACNNNNGTG	1 cut(s)	551
AluBI	AGCT	4 cut(s)	32, 427, 482, 613
AluI	AGCT	4 cut(s)	32, 427, 482, 613
Alw21I	GWGCWC	1 cut(s)	87
Aor51HI	AGCGCT	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	761
AspLEI	GCGC	4 cut(s)	194, 204, 236, 749
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	1 cut(s)	553
AsuII	TTCGAA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	2 cut(s)	48, 111
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	3 cut(s)	123, 488, 518
BceAI	ACGGC	1 cut(s)	739
BciT130I	CCWGG	1 cut(s)	623
BcnI	CCSGG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	623, 672
BmiI	GGNNCC	2 cut(s)	135, 763
BmrFI	CCNGG	2 cut(s)	623, 672
BmsI	GCATC	4 cut(s)	189, 203, 249, 589
BpiI	GAAGAC	2 cut(s)	48, 111
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	167, 358
BpuMI	CCSGG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	167, 646
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 689, 710
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	351, 528
Bse3DI	GCAATG	2 cut(s)	304, 749
BseBI	CCWGG	1 cut(s)	623
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	167, 646
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	143, 689, 710
BseMI	GCAATG	2 cut(s)	304, 749
BseMII	CTCAG	2 cut(s)	244, 372
BseNI	ACTGG	2 cut(s)	351, 528
BseXI	GCAGC	1 cut(s)	587
BsgI	GTGCAG	3 cut(s)	123, 440, 624
BshNI	GGYRCC	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	3 cut(s)	263, 539, 672
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	3 cut(s)	143, 689, 710
BsmFI	GGGAC	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	87, 510
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	1 cut(s)	687
BspCNI	CTCAG	2 cut(s)	243, 373
BspDI	ATCGAT	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	135, 763
BspT104I	TTCGAA	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	761
BsrDI	GCAATG	2 cut(s)	304, 749
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	351, 528
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	167, 646
BssT1I	CCWWGG	2 cut(s)	167, 646
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	3 cut(s)	177, 724, 730
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	138, 264, 615, 639
BstDEI	CTNAG	3 cut(s)	57, 230, 381
BstDSI	CCRYGG	1 cut(s)	167
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	4 cut(s)	194, 204, 236, 749
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 233, 457, 623, 667, 746
BstNI	CCWGG	1 cut(s)	623
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	621, 670
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	2 cut(s)	48, 111
Bsu15I	ATCGAT	1 cut(s)	197
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	4 cut(s)	423, 521, 592, 720
Cac8I	GCNNGC	4 cut(s)	138, 264, 615, 639
CfoI	GCGC	4 cut(s)	194, 204, 236, 749
Cfr10I	RCCGGY	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	13, 178, 762
CviAII	CATG	4 cut(s)	143, 168, 367, 737
CviQI	GTAC	3 cut(s)	13, 178, 762
DdeI	CTNAG	3 cut(s)	57, 230, 381
DraI	TTTAAA	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	167, 646
Eco24I	GRGCYC	1 cut(s)	510
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	621
EcoT14I	CCWWGG	2 cut(s)	167, 646
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	167, 646
FaeI	CATG	4 cut(s)	146, 171, 370, 740
FaiI	YATR	9 cut(s)	75, 113, 144, 169, 242, 368, 632, 738, 759
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	4 cut(s)	142, 167, 366, 736
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	576
FspI	TGCGCA	2 cut(s)	203, 748
GlaI	GCGC	4 cut(s)	193, 203, 235, 748
GluI	GCNGC	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	237
HapII	CCGG	3 cut(s)	263, 539, 672
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	4 cut(s)	194, 204, 236, 749
Hin1II	CATG	4 cut(s)	146, 171, 370, 740
Hin6I	GCGC	4 cut(s)	192, 202, 234, 747
HinP1I	GCGC	4 cut(s)	192, 202, 234, 747
HinfI	GANTC	5 cut(s)	89, 245, 270, 389, 582
HpaII	CCGG	3 cut(s)	263, 539, 672
HphI	GGTGA	1 cut(s)	553
Hpy188I	TCNGA	4 cut(s)	250, 275, 382, 478
Hpy188III	TCNNGA	2 cut(s)	184, 337
Hpy99I	CGWCG	2 cut(s)	224, 491
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	3 cut(s)	177, 724, 730
HpyCH4V	TGCA	7 cut(s)	125, 140, 421, 575, 602, 617, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 233, 457, 623, 667, 746
HpyF3I	CTNAG	3 cut(s)	57, 230, 381
Hsp92II	CATG	4 cut(s)	146, 171, 370, 740
HspAI	GCGC	4 cut(s)	192, 202, 234, 747
KpnI	GGTACC	1 cut(s)	765
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	133, 424
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	4 cut(s)	189, 203, 249, 589
MaeIII	GTNAC	4 cut(s)	34, 541, 718, 724
MboII	GAAGA	4 cut(s)	53, 116, 318, 527
MfeI	CAATTG	2 cut(s)	46, 742
MhlI	GDGCHC	2 cut(s)	87, 510
MluCI	AATT	6 cut(s)	46, 119, 252, 357, 591, 742
MlyI	GAGTC	2 cut(s)	254, 383
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	4 cut(s)	191, 217, 523, 694
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	3 cut(s)	18, 255, 360
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	3 cut(s)	263, 539, 672
MspR9I	CCNGG	2 cut(s)	623, 672
MunI	CAATTG	2 cut(s)	46, 742
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	6 cut(s)	122, 233, 457, 623, 667, 746
NaeI	GCCGGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	167
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	146, 171, 370, 740
NlaIV	GGNNCC	2 cut(s)	135, 763
NmuCI	GTSAC	4 cut(s)	34, 541, 718, 724
NsbI	TGCGCA	2 cut(s)	203, 748
NspV	TTCGAA	1 cut(s)	92
OliI	CACNNNNGTG	1 cut(s)	551
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	89, 270, 582
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	2 cut(s)	253, 383
PpsI	GAGTC	2 cut(s)	253, 383
Psp6I	CCWGG	1 cut(s)	621
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	2 cut(s)	135, 763
RsaI	GTAC	3 cut(s)	14, 179, 763
RsaNI	GTAC	3 cut(s)	13, 178, 762
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	18, 255, 360
SatI	GCNGC	1 cut(s)	576
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	2 cut(s)	254, 383
ScrFI	CCNGG	2 cut(s)	623, 672
SduI	GDGCHC	2 cut(s)	87, 510
SetI	ASST	8 cut(s)	34, 183, 282, 429, 484, 534, 615, 767
SfaNI	GCATC	4 cut(s)	189, 203, 249, 589
SfuI	TTCGAA	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	182, 337
SmoI	CTYRAG	2 cut(s)	182, 337
Sse9I	AATT	6 cut(s)	46, 119, 252, 357, 591, 742
SsiI	CCGC	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	621, 670
StyI	CCWWGG	2 cut(s)	167, 646
TaaI	ACNGT	3 cut(s)	177, 724, 730
TaqI	TCGA	4 cut(s)	87, 92, 197, 222
TasI	AATT	6 cut(s)	46, 119, 252, 357, 591, 742
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	89, 270, 582
Tru1I	TTAA	3 cut(s)	18, 255, 360
Tru9I	TTAA	3 cut(s)	18, 255, 360
TscAI	CASTG	4 cut(s)	423, 528, 592, 727
TseFI	GTSAC	4 cut(s)	34, 541, 718, 724
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	4 cut(s)	34, 541, 718, 724
TspDTI	ATGAA	4 cut(s)	42, 383, 422, 647
TspRI	CASTG	4 cut(s)	423, 528, 592, 727
XapI	RAATTY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.