Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Forward (+)

74239355 .. 74244191

Gene Structure 4837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0626700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGACGTCACACACCACCGATTCCCCTCCTCCCATTAAACACCTTGGCCGCCGCCGCAAAAGAAAACCTGACCCCGCCGATGCCGACCCTCACTCCGAACCCGACCCGCACCCGCCGCCGCGCCTCACCCGAGACCAATCGTTGCGGCTGCCGACCGACCCCCACGTCCGGATCGGAATGTACGTGGCCCTGGCCCACGCCGGACTAGCTTTCTCACTCGCGCTCCTCTACGGCGTCACGAAGCTTCTAGAAGGCTACTGGCGCCCAATCCAATGGGCCATTCTCTGTTCTATGCCTCTCCGCGAGCTCCACACTGCTCTGGTTTCGTTCTGGTCTGACTCTCTCAATCTCGGCCTGTTCGAAACCCTCATTGCGCTCCCACGCGCCGCGGTACGCGCCGCCACCGCCTCCCTCGTCGACTCCCGCACCGCCATTCACCGCCTCCTCAAACGCCCCTGCCCGCCTCGCCCGAAAAAGAATTTCAGCTTCTCAAAAATTATACAACGGCTTATCACGTTTGCCCTATTTGTGATTCTCTATGAGAACATAGGCTTTTACACTATCCCGGCATTTGCAATTGCTTGCTCTGTAGCTTATGTTTTGGGTTACAGAAGCATAGTGATCGATTCTGGTGTGACTACTACACTTTCGGCACTTTCGCGCCGTGGAAGTAGGTTGAAACTGAGGAATAGTAACAGGGTTAGCAGGTACATTACTAGTTTGATGCTCAAAAGGTTGAAGACGACGGTTGCGATTGGCTTGATCATGGTTATGATAGTGGGGACTTTGTTAGGGATGGTTTTCTTTTCGTATAAGATTGGAATGGAAGGGAAGTTTGCTGTGATTTCGATGAAAGTTCATTTGGAACACCAATTGGAGCAGAATTACAACTATGCGGAGAGAGTTGGGTTGAAGAAATGGATGGATGAGAATCAAATTCCTGAGTTGATTGATGATTATGCTACGAAGTTTTATGAGACAGTGTTGCTGAATATCGATTCTTGGGCAGCTGATTACAATGTGACTGAGATTGTGGACAGTCTGAGGCATTATTTGACTAGTAATGATTCTTCTCCAGTCGACATTTCGAGTAATGGTGGTGTTGGCAATATTGATCATAAGCAGATCAATAGCAATATCAATCAGCCCTTGTCCGAGAAGTTTCATAACATTCAATCGAGGGTGAGGAACAGAGAATGGGGAGTGATCTATAGGGATATTGATGATATTTTTCATTTTAGGAAATTCATGTCTATGATTGCTAAGGAAGACTTGGCAGAGAAAGCGAAAGCATATTTGTTACAGGGATTGGACATTTCGAGAAGGTTACTTACTAGTAGTACTACGGTTTTGGCCGGAGGTGCAAATATTTTGCTGTTCATGGCAGTCTCACTTGTTTCAGGTGCTGCTGGATTGTTCAATTTCATCTTCGAATTGACAGTGTTCTTCTGGCTTTTGTATTACCTAATCACCACGGACTCAGGAGGTGTTATGGATCATGTTTTGGGGATGCTGCCACTTTCAAGATCGACAAGGGTTAGATGTGCCCAAGTGCTTGATCATGCTGTCAGCAGTGTGCTGTTGGCTGCTGCTAAGGTCACATTCTTTCAAGGATGCCTCACATATCTCTTGTTCAGATTCTACCAGATTCATTTCCTGTACATGTCTACATCCCTTGCCCTGATGAGTGCCGTTTTGCAAATTACACCGGCTTGGCTTTTGTCAATCCCGGCAGCGCTGCAACTGGGCATGGAAGCGAAATATCTAGACGCCATTTTGTTGACATCAATCCATCAAATACTGCTGGAATATGGAACTGCTGCTATCCAAGATGAGATTCCAGGACAGAATGCCTACCTCACCGGGCTTAGCATACTTGGTGGCATTGCTCTTTTCCCATCCATGTTAGAAGGAGCAATTATGGGGCCTTTGCTGATGACAGTCATGATTGCCTTCAAAAATCTGTACGTAGAATTCGTTCTTTCTTCCGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

665

Amino Acids

74.37

Weight (kDa)

9.24

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	3 cut(s)	417, 1080, 1667
AccII	CGCG	7 cut(s)	121, 221, 303, 384, 389, 396, 661
AccIII	TCCGGA	2 cut(s)	168, 1988
AclWI	GGATC	2 cut(s)	179, 1503
AcoI	YGGCCR	2 cut(s)	46, 1353
AcsI	RAATTY	4 cut(s)	478, 936, 1244, 1973
AcyI	GRCGYC	4 cut(s)	5, 234, 262, 1770
AfaI	GTAC	6 cut(s)	182, 393, 710, 1342, 1661, 1967
AfeI	AGCGCT	1 cut(s)	1737
AfiI	CCNNNNNNNGG	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	1662
AgsI	TTSAA	8 cut(s)	679, 739, 913, 1175, 1420, 1524, 1610, 1957
AhlI	ACTAGT	3 cut(s)	716, 1058, 1334
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	189, 1840
AjuI	GAANNNNNNNTTGG	6 cut(s)	264, 296, 845, 877, 1821, 1853
AluBI	AGCT	6 cut(s)	209, 244, 307, 486, 593, 1010
AluI	AGCT	6 cut(s)	209, 244, 307, 486, 593, 1010
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	126, 971, 1393
AlwI	GGATC	2 cut(s)	179, 1503
AlwNI	CAGNNNCTG	1 cut(s)	1406
Ama87I	CYCGRG	1 cut(s)	129
Aor13HI	TCCGGA	2 cut(s)	168, 1988
Aor51HI	AGCGCT	1 cut(s)	1737
AoxI	GGCC	7 cut(s)	46, 186, 192, 276, 352, 1353, 1925
ApeKI	GCWGC	9 cut(s)	148, 1007, 1406, 1513, 1586, 1589, 1733, 1738, 1820
ApoI	RAATTY	4 cut(s)	478, 936, 1244, 1973
Asp700I	GAANNNNTTC	1 cut(s)	1977
AspLEI	GCGC	8 cut(s)	123, 223, 264, 376, 386, 398, 663, 1738
AspS9I	GGNCC	4 cut(s)	187, 193, 276, 1925
AsuC2I	CCSGG	3 cut(s)	566, 1730, 1864
AsuHPI	GGTGA	5 cut(s)	118, 428, 1195, 1462, 1852
AsuII	TTCGAA	2 cut(s)	360, 1431
AvaI	CYCGRG	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	1549
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	4 cut(s)	1054, 1086, 1315, 1347
BbsI	GAAGAC	2 cut(s)	746, 1275
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	9 cut(s)	135, 1019, 1393, 1500, 1573, 1576, 1725, 1745, 1807
BccI	CCATC	4 cut(s)	790, 916, 1800, 1906
BceAI	ACGGC	4 cut(s)	247, 521, 648, 1676
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	191, 1842
BclI	TGATCA	3 cut(s)	762, 1114, 1558
BcnI	CCSGG	3 cut(s)	566, 1730, 1864
BcoDI	GTCTC	3 cut(s)	126, 971, 1393
BcuI	ACTAGT	3 cut(s)	716, 1058, 1334
BfaI	CTAG	6 cut(s)	206, 248, 717, 1059, 1335, 1766
BfmI	CTRYAG	2 cut(s)	588, 1210
BfoI	RGCGCY	2 cut(s)	265, 1739
BfuAI	ACCTGC	1 cut(s)	696
BlpI	GCTNAGC	1 cut(s)	1868
BmcAI	AGTACT	1 cut(s)	1342
Bme1390I	CCNGG	5 cut(s)	191, 566, 1730, 1842, 1864
BmeT110I	CYCGRG	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	187, 193, 276, 1925
BmiI	GGNNCC	2 cut(s)	263, 1926
BmrFI	CCNGG	5 cut(s)	191, 566, 1730, 1842, 1864
BmrI	ACTGGG	1 cut(s)	1754
BmsI	GCATC	4 cut(s)	70, 714, 1500, 1604
BmuI	ACTGGG	1 cut(s)	1754
BpiI	GAAGAC	2 cut(s)	746, 1275
BpmI	CTGGAG	1 cut(s)	1059
Bpu10I	CCTNAGC	2 cut(s)	1263, 1593
Bpu1102I	GCTNAGC	1 cut(s)	1868
Bpu14I	TTCGAA	2 cut(s)	360, 1431
BpuMI	CCSGG	3 cut(s)	566, 1730, 1864
Bsa29I	ATCGAT	2 cut(s)	624, 996
BsaAI	YACGTR	2 cut(s)	184, 1969
BsaBI	GATNNNNATC	1 cut(s)	930
BsaHI	GRCGYC	4 cut(s)	5, 234, 262, 1770
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	43, 189, 387, 664, 1473
BsaWI	WCCGGW	2 cut(s)	168, 1988
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	1708
Bse1I	ACTGG	3 cut(s)	263, 1076, 1749
Bse3DI	GCAATG	2 cut(s)	369, 1884
Bse8I	GATNNNNATC	1 cut(s)	930
BseAI	TCCGGA	2 cut(s)	168, 1988
BseBI	CCWGG	2 cut(s)	191, 1842
BseCI	ATCGAT	2 cut(s)	624, 996
BseDI	CCNNGG	5 cut(s)	43, 189, 387, 664, 1473
BseGI	GGATG	7 cut(s)	801, 927, 931, 1515, 1619, 1670, 1898
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMI	GCAATG	2 cut(s)	369, 1884
BseMII	CTCAG	5 cut(s)	674, 933, 1017, 1034, 1494
BseNI	ACTGG	3 cut(s)	263, 1076, 1749
BseRI	GAGGAG	3 cut(s)	18, 215, 434
BseSI	GKGCMC	1 cut(s)	1549
BseXI	GCAGC	9 cut(s)	135, 1019, 1393, 1500, 1573, 1576, 1725, 1745, 1807
Bsh1236I	CGCG	7 cut(s)	121, 221, 303, 384, 389, 396, 661
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	7 cut(s)	48, 188, 194, 278, 354, 1355, 1927
BshNI	GGYRCC	1 cut(s)	261
BshVI	ATCGAT	2 cut(s)	624, 996
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	8 cut(s)	169, 201, 566, 1356, 1709, 1730, 1863, 1989
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	3 cut(s)	126, 971, 1393
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	1855
BsnI	GGCC	7 cut(s)	48, 188, 194, 278, 354, 1355, 1927
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	129
Bsp119I	TTCGAA	2 cut(s)	360, 1431
Bsp1286I	GDGCHC	2 cut(s)	309, 1549
Bsp13I	TCCGGA	2 cut(s)	168, 1988
Bsp1407I	TGTACA	1 cut(s)	1659
Bsp143I	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
Bsp1720I	GCTNAGC	1 cut(s)	1868
BspANI	GGCC	7 cut(s)	48, 188, 194, 278, 354, 1355, 1927
BspCNI	CTCAG	5 cut(s)	675, 934, 1018, 1035, 1493
BspDI	ATCGAT	2 cut(s)	624, 996
BspEI	TCCGGA	2 cut(s)	168, 1988
BspFNI	CGCG	7 cut(s)	121, 221, 303, 384, 389, 396, 661
BspHI	TCATGA	1 cut(s)	1944
BspLI	GGNNCC	2 cut(s)	263, 1926
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	2 cut(s)	179, 1503
BspT104I	TTCGAA	2 cut(s)	360, 1431
BspT107I	GGYRCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	2 cut(s)	369, 1884
BsrFI	RCCGGY	1 cut(s)	1708
BsrGI	TGTACA	1 cut(s)	1659
BsrI	ACTGG	3 cut(s)	263, 1076, 1749
BssAI	RCCGGY	1 cut(s)	1708
BssECI	CCNNGG	5 cut(s)	43, 189, 387, 664, 1473
BssMI	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
BssNI	GRCGYC	4 cut(s)	5, 234, 262, 1770
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	191, 1842
Bst4CI	ACNGT	7 cut(s)	748, 982, 1040, 1348, 1441, 1942, 1995
BstACI	GRCGYC	4 cut(s)	5, 234, 262, 1770
BstAUI	TGTACA	1 cut(s)	1659
BstBAI	YACGTR	2 cut(s)	184, 1969
BstBI	TTCGAA	2 cut(s)	360, 1431
BstC8I	GCNNGC	3 cut(s)	305, 461, 583
BstDEI	CTNAG	8 cut(s)	683, 942, 1026, 1043, 1263, 1480, 1593, 1868
BstDSI	CCRYGG	3 cut(s)	387, 664, 1473
BstF5I	GGATG	7 cut(s)	801, 927, 931, 1515, 1619, 1670, 1898
BstFNI	CGCG	7 cut(s)	121, 221, 303, 384, 389, 396, 661
BstH2I	RGCGCY	2 cut(s)	265, 1739
BstHHI	GCGC	8 cut(s)	123, 223, 264, 376, 386, 398, 663, 1738
BstKTI	GATC	9 cut(s)	174, 624, 765, 1117, 1128, 1209, 1498, 1529, 1561
BstMAI	GTCTC	3 cut(s)	126, 971, 1393
BstMBI	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 115, 206, 261, 395, 404, 465, 1283, 1361
BstNI	CCWGG	2 cut(s)	191, 1842
BstNSI	RCATGY	1 cut(s)	1666
BstSCI	CCNGG	5 cut(s)	189, 564, 1728, 1840, 1862
BstSFI	CTRYAG	2 cut(s)	588, 1210
BstSLI	GKGCMC	1 cut(s)	1549
BstSNI	TACGTA	1 cut(s)	1969
BstUI	CGCG	7 cut(s)	121, 221, 303, 384, 389, 396, 661
BstV1I	GCAGC	9 cut(s)	135, 1019, 1393, 1500, 1573, 1576, 1725, 1745, 1807
BstV2I	GAAGAC	2 cut(s)	746, 1275
BstXI	CCANNNNNNTGG	1 cut(s)	273
Bsu15I	ATCGAT	2 cut(s)	624, 996
BsuRI	GGCC	7 cut(s)	48, 188, 194, 278, 354, 1355, 1927
BsuTUI	ATCGAT	2 cut(s)	624, 996
BtgI	CCRYGG	3 cut(s)	387, 664, 1473
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	7 cut(s)	801, 927, 931, 1515, 1619, 1670, 1898
BtsI	GCAGTG	2 cut(s)	312, 1579
BtsIMutI	CAGTG	4 cut(s)	312, 987, 1446, 1579
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	3 cut(s)	305, 461, 583
CaiI	CAGNNNCTG	1 cut(s)	1406
CciI	TCATGA	1 cut(s)	1944
CfoI	GCGC	8 cut(s)	123, 223, 264, 376, 386, 398, 663, 1738
Cfr10I	RCCGGY	1 cut(s)	1708
Cfr13I	GGNCC	4 cut(s)	187, 193, 276, 1925
Cfr42I	CCGCGG	1 cut(s)	390
ClaI	ATCGAT	2 cut(s)	624, 996
CseI	GACGC	2 cut(s)	223, 1778
Csp6I	GTAC	6 cut(s)	181, 392, 709, 1341, 1660, 1966
CviAII	CATG	9 cut(s)	766, 1249, 1381, 1499, 1562, 1663, 1750, 1903, 1945
CviQI	GTAC	6 cut(s)	181, 392, 709, 1341, 1660, 1966
DdeI	CTNAG	8 cut(s)	683, 942, 1026, 1043, 1263, 1480, 1593, 1868
DinI	GGCGCC	1 cut(s)	263
DpnI	GATC	9 cut(s)	173, 623, 764, 1116, 1127, 1208, 1497, 1528, 1560
DpnII	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	46, 1353
Ecl136II	GAGCTC	1 cut(s)	307
Eco105I	TACGTA	1 cut(s)	1969
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	126
Eco47III	AGCGCT	1 cut(s)	1737
Eco53kI	GAGCTC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	1925
EcoRI	GAATTC	1 cut(s)	1973
EcoRII	CCWGG	2 cut(s)	189, 1840
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	263
EheI	GGCGCC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	9 cut(s)	769, 1252, 1384, 1502, 1565, 1666, 1753, 1906, 1948
FalI	AAGNNNNNCTT	2 cut(s)	1256, 1288
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	9 cut(s)	765, 1248, 1380, 1498, 1561, 1662, 1749, 1902, 1944
FauI	CCCGC	5 cut(s)	82, 114, 120, 431, 468
FbaI	TGATCA	3 cut(s)	762, 1114, 1558
FblI	GTMKAC	3 cut(s)	417, 1080, 1667
FokI	GGATG	7 cut(s)	808, 934, 938, 1522, 1626, 1657, 1885
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	6 cut(s)	206, 248, 717, 1059, 1335, 1766
GlaI	GCGC	8 cut(s)	122, 222, 263, 375, 385, 397, 662, 1737
GsuI	CTGGAG	1 cut(s)	1059
HaeII	RGCGCY	2 cut(s)	265, 1739
HaeIII	GGCC	7 cut(s)	48, 188, 194, 278, 354, 1355, 1927
HapII	CCGG	8 cut(s)	169, 201, 566, 1356, 1709, 1730, 1863, 1989
HgaI	GACGC	2 cut(s)	223, 1778
HhaI	GCGC	8 cut(s)	123, 223, 264, 376, 386, 398, 663, 1738
Hin1I	GRCGYC	4 cut(s)	5, 234, 262, 1770
Hin1II	CATG	9 cut(s)	769, 1252, 1384, 1502, 1565, 1666, 1753, 1906, 1948
Hin6I	GCGC	8 cut(s)	121, 221, 262, 374, 384, 396, 661, 1736
HinP1I	GCGC	8 cut(s)	121, 221, 262, 374, 384, 396, 661, 1736
HincII	GTYRAC	3 cut(s)	418, 1081, 1782
HindII	GTYRAC	3 cut(s)	418, 1081, 1782
HindIII	AAGCTT	1 cut(s)	242
HpaII	CCGG	8 cut(s)	169, 201, 566, 1356, 1709, 1730, 1863, 1989
HphI	GGTGA	5 cut(s)	118, 428, 1195, 1462, 1852
Hpy166II	GTNNAC	5 cut(s)	418, 1036, 1081, 1668, 1782
Hpy188I	TCNGA	6 cut(s)	97, 176, 337, 1044, 1156, 1637
Hpy8I	GTNNAC	5 cut(s)	418, 1036, 1081, 1668, 1782
Hpy99I	CGWCG	2 cut(s)	419, 748
HpyAV	CCTTC	5 cut(s)	245, 821, 1317, 1904, 1963
HpyCH4III	ACNGT	7 cut(s)	748, 982, 1040, 1348, 1441, 1942, 1995
HpyCH4IV	ACGT	5 cut(s)	5, 165, 183, 515, 1968
HpyCH4V	TGCA	4 cut(s)	575, 1364, 1699, 1741
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 115, 206, 261, 395, 404, 465, 1283, 1361
HpyF3I	CTNAG	8 cut(s)	683, 942, 1026, 1043, 1263, 1480, 1593, 1868
HpySE526I	ACGT	5 cut(s)	5, 165, 183, 515, 1968
Hsp92I	GRCGYC	4 cut(s)	5, 234, 262, 1770
Hsp92II	CATG	9 cut(s)	769, 1252, 1384, 1502, 1565, 1666, 1753, 1906, 1948
HspAI	GCGC	8 cut(s)	121, 221, 262, 374, 384, 396, 661, 1736
KasI	GGCGCC	1 cut(s)	261
Kpn2I	TCCGGA	2 cut(s)	168, 1988
Ksp22I	TGATCA	3 cut(s)	762, 1114, 1558
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
LmnI	GCTCC	5 cut(s)	228, 312, 381, 877, 1913
Lsp1109I	GCAGC	9 cut(s)	135, 1019, 1393, 1500, 1573, 1576, 1725, 1745, 1807
LweI	GCATC	4 cut(s)	70, 714, 1500, 1604
MaeI	CTAG	6 cut(s)	206, 248, 717, 1059, 1335, 1766
MaeII	ACGT	5 cut(s)	5, 165, 183, 515, 1968
MaeIII	GTNAC	9 cut(s)	6, 235, 605, 634, 692, 1021, 1299, 1326, 1597
MalI	GATC	9 cut(s)	173, 623, 764, 1116, 1127, 1208, 1497, 1528, 1560
MboI	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
MboII	GAAGA	7 cut(s)	751, 925, 1062, 1280, 1420, 1438, 1977
MfeI	CAATTG	2 cut(s)	576, 872
MhlI	GDGCHC	2 cut(s)	309, 1549
Mly113I	GGCGCC	1 cut(s)	262
MlyI	GAGTC	3 cut(s)	332, 413, 1472
MroI	TCCGGA	2 cut(s)	168, 1988
MroXI	GAANNNNTTC	1 cut(s)	1977
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	770, 1253
MspA1I	CMGCKG	2 cut(s)	389, 1010
MspI	CCGG	8 cut(s)	169, 201, 566, 1356, 1709, 1730, 1863, 1989
MspR9I	CCNGG	5 cut(s)	191, 566, 1730, 1842, 1864
MunI	CAATTG	2 cut(s)	576, 872
Mva1269I	GAATGC	1 cut(s)	1855
MvaI	CCWGG	2 cut(s)	191, 1842
MvnI	CGCG	7 cut(s)	121, 221, 303, 384, 389, 396, 661
MwoI	GCNNNNNNNGC	9 cut(s)	54, 115, 206, 261, 395, 404, 465, 1283, 1361
NarI	GGCGCC	1 cut(s)	262
NciI	CCSGG	3 cut(s)	566, 1730, 1864
NdeII	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
NlaIII	CATG	9 cut(s)	769, 1252, 1384, 1502, 1565, 1666, 1753, 1906, 1948
NlaIV	GGNNCC	2 cut(s)	263, 1926
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	5 cut(s)	6, 235, 634, 1021, 1597
NspI	RCATGY	1 cut(s)	1666
NspV	TTCGAA	2 cut(s)	360, 1431
PagI	TCATGA	1 cut(s)	1944
PciI	ACATGT	1 cut(s)	1662
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 357, 749, 1974
PctI	GAATGC	1 cut(s)	1855
PdmI	GAANNNNTTC	1 cut(s)	1977
PfeI	GAWTC	9 cut(s)	20, 532, 626, 931, 998, 1067, 1638, 1648, 1837
PfoI	TCCNGGA	1 cut(s)	1840
PleI	GAGTC	3 cut(s)	332, 413, 1472
PluTI	GGCGCC	1 cut(s)	265
PpsI	GAGTC	3 cut(s)	332, 413, 1472
Ppu21I	YACGTR	2 cut(s)	184, 1969
PscI	ACATGT	1 cut(s)	1662
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	189, 1840
PspGI	CCWGG	2 cut(s)	189, 1840
PspN4I	GGNNCC	2 cut(s)	263, 1926
PspPI	GGNCC	4 cut(s)	187, 193, 276, 1925
PsrI	GAACNNNNNNTAC	2 cut(s)	1962, 1994
PstNI	CAGNNNCTG	1 cut(s)	1406
PvuII	CAGCTG	1 cut(s)	1010
RsaI	GTAC	6 cut(s)	182, 393, 710, 1342, 1661, 1967
RsaNI	GTAC	6 cut(s)	181, 392, 709, 1341, 1660, 1966
RseI	CAYNNNNRTG	2 cut(s)	770, 1253
SacI	GAGCTC	1 cut(s)	309
SacII	CCGCGG	1 cut(s)	390
SalI	GTCGAC	2 cut(s)	416, 1079
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	9 cut(s)	171, 621, 762, 1114, 1125, 1206, 1495, 1526, 1558
Sau96I	GGNCC	4 cut(s)	187, 193, 276, 1925
ScaI	AGTACT	1 cut(s)	1342
SchI	GAGTC	3 cut(s)	332, 413, 1472
ScrFI	CCNGG	5 cut(s)	191, 566, 1730, 1842, 1864
SduI	GDGCHC	2 cut(s)	309, 1549
SfaNI	GCATC	4 cut(s)	70, 714, 1500, 1604
SfcI	CTRYAG	2 cut(s)	588, 1210
SfoI	GGCGCC	1 cut(s)	263
Sfr303I	CCGCGG	1 cut(s)	390
SfuI	TTCGAA	2 cut(s)	360, 1431
SgrBI	CCGCGG	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	770, 1253
SnaBI	TACGTA	1 cut(s)	1969
SpeI	ACTAGT	3 cut(s)	716, 1058, 1334
SspDI	GGCGCC	1 cut(s)	261
SspI	AATATT	2 cut(s)	1111, 1369
SspMI	CTAG	6 cut(s)	206, 248, 717, 1059, 1335, 1766
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	5 cut(s)	189, 564, 1728, 1840, 1862
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	7 cut(s)	748, 982, 1040, 1348, 1441, 1942, 1995
TaiI	ACGT	5 cut(s)	8, 168, 186, 518, 1971
TaqII	GACCGA	1 cut(s)	170
TatI	WGTACW	2 cut(s)	1340, 1659
TauI	GCSGC	8 cut(s)	51, 54, 57, 118, 121, 148, 389, 401
TfiI	GAWTC	9 cut(s)	20, 532, 626, 931, 998, 1067, 1638, 1648, 1837
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	4 cut(s)	319, 987, 1446, 1579
TseFI	GTSAC	5 cut(s)	6, 235, 634, 1021, 1597
TseI	GCWGC	9 cut(s)	148, 1007, 1406, 1513, 1586, 1589, 1733, 1738, 1820
Tsp45I	GTSAC	5 cut(s)	6, 235, 634, 1021, 1597
TspDTI	ATGAA	8 cut(s)	848, 866, 1154, 1223, 1237, 1369, 1414, 1640
TspGWI	ACGGA	1 cut(s)	1490
TspRI	CASTG	4 cut(s)	319, 987, 1446, 1579
XapI	RAATTY	4 cut(s)	478, 936, 1244, 1973
XbaI	TCTAGA	2 cut(s)	247, 1765
XceI	RCATGY	1 cut(s)	1666
XmiI	GTMKAC	3 cut(s)	417, 1080, 1667
XmnI	GAANNNNTTC	1 cut(s)	1977
XspI	CTAG	6 cut(s)	206, 248, 717, 1059, 1335, 1766
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.