Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Reverse (-)

62878319 .. 62880318

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGATGACTGAGTGGAGGATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCCGGGCTTGCCTGCCTAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGAGTTGGTTCTGAAAGTGTGCAATTTCGTCAGGAAAGCTTGGGATTTGGGACAAAATGAGCCTAAAAAAGTGATTCATTGCTTGAAAGTAGGGATGGCACTCACTGTAGTTTCACTGTTTTACTACATGAGACCTTTGTATGAAGGTATGGGAGGAAATGCTATGTGGGCAGTTATGACTGTTGTGGTTGTCTTTGAGAACACAGTGGGTGCAACAATATGTAAAAGTTTAAACAGAATTTGCGGAACTTTTGTGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTCGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGCTTCTGCAGTTACCTTCTCAAGATTTATACCATCAGTGAAAAAGCGATTTGATTATGGTGCAATGATCTTCATCCTCACATTCAGTTTAGTTGCAGTGTCGGGTTACCGGGTGGATAAATTATTGGAAATGGCAAACAATAGAGTATACACCATCATCATTGGGACTTCATTATGCATTATGATAACCATGATTATTTGCCCCATTTGGGCTGGGGAGGAACTATATATGCTCATCACCCGAAACATGGACAAACTAACCTATTCCTTAGATGGTTGTGTTGGAGAGTATTTCAATGAAAGCGGAAGCTCTTCTGATGGTGACAAGGAATCTGATAAGAAATTACTTGGCTACAAATGTGTTTTAACCTCAAAAGCAACAGAAGAAGCCATGGCTAATTTTGCAAGGTGGGAGCCTGCACATGGCCGCTTCAACTTCAGACATCCATGGAAACAATACCTCAAAATCGGGGCATCAATGCGTGCTTGTGCTTATTGCATTGACGCCCTTGATGGTTGCGTGAATTCCGAAAATGAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAACATTGCTTTGAAAGTAAGCTCCGAGTCTTCAAGAGTCATCAAAGAGCTTGCAAAGACTATGAAGACAATGAAGAAATCGTCCACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTACTTTATTTATTACTCCGCAGCCACTACAAGGAGCTGACTGTTCTGAAAAAAAGAACACGGGAGCAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAGTTTCTTTACTGATTGAGATTGCTGCAAGGATTGAAGGCATGGTTAATGCAGTTGAAGAACTAGCTGAGATGGGCGAGTACAAGTCAGTTGCAGATGAGAAGAATGAAAACCAGCCAGTTAGTAAAACTAATGTACCAGATGAACATAAGGAAGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

489

Amino Acids

54.18

Weight (kDa)

5.87

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 409	5.5e-147	Aluminium activated malate transporter
FUSC_2	PF13515	90 - 221	4.7e-10	Fusaric acid resistance protein-like
FUSC	PF04632	97 - 233	4.7e-08	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	4 cut(s)	375, 783, 907, 1220
AcoI	YGGCCR	1 cut(s)	904
AcsI	RAATTY	3 cut(s)	369, 440, 1003
AcuI	CTGAAG	3 cut(s)	87, 137, 901
AcyI	GRCGYC	1 cut(s)	984
AfaI	GTAC	2 cut(s)	1385, 1440
AfiI	CCNNNNNNNGG	5 cut(s)	86, 688, 727, 902, 1232
AgsI	TTSAA	7 cut(s)	217, 775, 913, 1060, 1080, 1340, 1361
Alw21I	GWGCWC	1 cut(s)	1179
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	904
ApeKI	GCWGC	2 cut(s)	1222, 1328
ApoI	RAATTY	3 cut(s)	369, 440, 1003
Asp700I	GAANNNNTTC	1 cut(s)	790
AsuC2I	CCSGG	2 cut(s)	88, 590
AsuHPI	GGTGA	2 cut(s)	709, 812
BaeI	ACNNNNGTAYC	2 cut(s)	1422, 1455
BanII	GRGCYC	1 cut(s)	1179
BbsI	GAAGAC	2 cut(s)	1068, 1118
Bbv12I	GWGCWC	1 cut(s)	1179
BbvI	GCAGC	2 cut(s)	1234, 1315
BccI	CCATC	8 cut(s)	50, 220, 520, 641, 746, 791, 986, 1369
BcnI	CCSGG	2 cut(s)	88, 590
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	101, 1367
BfmI	CTRYAG	3 cut(s)	237, 486, 1134
BisI	GCNGC	3 cut(s)	907, 1223, 1329
BlsI	GCNGC	3 cut(s)	908, 1224, 1330
Bme1390I	CCNGG	2 cut(s)	88, 590
BmiI	GGNNCC	3 cut(s)	78, 894, 1020
BmrFI	CCNGG	2 cut(s)	88, 590
BmsI	GCATC	2 cut(s)	417, 962
BpiI	GAAGAC	2 cut(s)	1068, 1118
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	2 cut(s)	88, 590
BsaBI	GATNNNNATC	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	984
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	870, 926
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 688, 727, 902, 1232
Bse1I	ACTGG	1 cut(s)	1421
Bse3DI	GCAATG	3 cut(s)	208, 549, 1050
Bse8I	GATNNNNATC	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	870, 926
BseGI	GGATG	5 cut(s)	33, 231, 408, 552, 922
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	5 cut(s)	86, 688, 727, 902, 1232
BseMI	GCAATG	3 cut(s)	208, 549, 1050
BseMII	CTCAG	3 cut(s)	24, 1014, 1362
BseNI	ACTGG	1 cut(s)	1421
BseXI	GCAGC	2 cut(s)	1234, 1315
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	882
BshFI	GGCC	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	1179
BsiSI	CCGG	2 cut(s)	87, 589
BslFI	GGGAC	2 cut(s)	195, 658
BslI	CCNNNNNNNGG	5 cut(s)	86, 688, 727, 902, 1232
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	195, 658
BsnI	GGCC	1 cut(s)	906
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	1179
Bsp143I	GATC	1 cut(s)	546
Bsp19I	CCATGG	2 cut(s)	870, 926
BspACI	CCGC	4 cut(s)	375, 783, 907, 1220
BspANI	GGCC	1 cut(s)	906
BspCNI	CTCAG	3 cut(s)	25, 1015, 1363
BspLI	GGNNCC	3 cut(s)	78, 894, 1020
BspMAI	CTGCAG	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	796
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	3 cut(s)	208, 549, 1050
BsrI	ACTGG	1 cut(s)	1421
BssECI	CCNNGG	2 cut(s)	870, 926
BssMI	GATC	1 cut(s)	546
BssNAI	GTATAC	1 cut(s)	628
BssNI	GRCGYC	1 cut(s)	984
BssT1I	CCWWGG	2 cut(s)	870, 926
Bst1107I	GTATAC	1 cut(s)	628
Bst4CI	ACNGT	5 cut(s)	238, 249, 313, 337, 1244
Bst6I	CTCTTC	3 cut(s)	796, 1203, 1452
BstACI	GRCGYC	1 cut(s)	984
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 897, 963, 1098
BstDEI	CTNAG	4 cut(s)	33, 748, 1023, 1371
BstDSI	CCRYGG	2 cut(s)	870, 926
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	5 cut(s)	33, 231, 408, 552, 922
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 881
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	86, 588
BstSFI	CTRYAG	3 cut(s)	237, 486, 1134
BstV1I	GCAGC	2 cut(s)	1234, 1315
BstV2I	GAAGAC	2 cut(s)	1068, 1118
BstZ17I	GTATAC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	906
BtgI	CCRYGG	2 cut(s)	870, 926
BtsCI	GGATG	5 cut(s)	33, 231, 408, 552, 922
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	5 cut(s)	234, 245, 342, 522, 582
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 897, 963, 1098
CseI	GACGC	1 cut(s)	992
Csp6I	GTAC	2 cut(s)	1384, 1439
CviAII	CATG	9 cut(s)	259, 670, 727, 871, 902, 927, 1279, 1288, 1345
CviQI	GTAC	2 cut(s)	1384, 1439
DdeI	CTNAG	4 cut(s)	33, 748, 1023, 1371
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	904
Eam1104I	CTCTTC	3 cut(s)	796, 1203, 1452
EarI	CTCTTC	3 cut(s)	796, 1203, 1452
Ecl136II	GAGCTC	1 cut(s)	1177
Eco130I	CCWWGG	2 cut(s)	870, 926
Eco24I	GRGCYC	1 cut(s)	1179
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	1285
Eco53kI	GAGCTC	1 cut(s)	1177
Eco57I	CTGAAG	3 cut(s)	87, 137, 901
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	1177
EcoO65I	GGTNACC	1 cut(s)	584
EcoRI	GAATTC	2 cut(s)	440, 1003
EcoRV	GATATC	1 cut(s)	1285
EcoT14I	CCWWGG	2 cut(s)	870, 926
EcoT22I	ATGCAT	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	1179
ErhI	CCWWGG	2 cut(s)	870, 926
FaeI	CATG	9 cut(s)	262, 673, 730, 874, 905, 930, 1282, 1291, 1348
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	195, 658
FatI	CATG	9 cut(s)	258, 669, 726, 870, 901, 926, 1278, 1287, 1344
FauNDI	CATATG	1 cut(s)	1041
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	3 cut(s)	907, 1223, 1329
FokI	GGATG	5 cut(s)	40, 238, 395, 539, 909
FriOI	GRGCYC	1 cut(s)	1179
Fsp4HI	GCNGC	3 cut(s)	907, 1223, 1329
FspBI	CTAG	2 cut(s)	101, 1367
GluI	GCNGC	3 cut(s)	907, 1223, 1329
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	906
HapII	CCGG	2 cut(s)	87, 589
HgaI	GACGC	1 cut(s)	992
Hin1I	GRCGYC	1 cut(s)	984
Hin1II	CATG	9 cut(s)	262, 673, 730, 874, 905, 930, 1282, 1291, 1348
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	5 cut(s)	205, 424, 809, 1073, 1083
HpaII	CCGG	2 cut(s)	87, 589
HphI	GGTGA	2 cut(s)	709, 812
Hpy166II	GTNNAC	2 cut(s)	628, 1131
Hpy188III	TCNNGA	7 cut(s)	8, 80, 163, 432, 501, 1022, 1080
Hpy8I	GTNNAC	2 cut(s)	628, 1131
HpyAV	CCTTC	5 cut(s)	7, 112, 269, 505, 1334
HpyCH4III	ACNGT	5 cut(s)	238, 249, 313, 337, 1244
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 881
HpyF3I	CTNAG	4 cut(s)	33, 748, 1023, 1371
Hsp92I	GRCGYC	1 cut(s)	984
Hsp92II	CATG	9 cut(s)	262, 673, 730, 874, 905, 930, 1282, 1291, 1348
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	796
LmnI	GCTCC	7 cut(s)	82, 892, 1073, 1174, 1182, 1235, 1265
Lsp1109I	GCAGC	2 cut(s)	1234, 1315
LweI	GCATC	2 cut(s)	417, 962
MaeI	CTAG	2 cut(s)	101, 1367
MaeIII	GTNAC	4 cut(s)	490, 584, 800, 1297
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	9 cut(s)	541, 783, 875, 1068, 1123, 1132, 1190, 1373, 1417
MhlI	GDGCHC	1 cut(s)	1179
MluCI	AATT	7 cut(s)	154, 369, 440, 599, 821, 877, 1003
MlyI	GAGTC	3 cut(s)	433, 1082, 1092
MmeI	TCCRAC	2 cut(s)	742, 1129
MnlI	CCTC	9 cut(s)	33, 278, 566, 691, 859, 950, 1009, 1177, 1453
Mph1103I	ATGCAT	1 cut(s)	659
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	4 cut(s)	362, 845, 1190, 1350
MspI	CCGG	2 cut(s)	87, 589
MspR9I	CCNGG	2 cut(s)	88, 590
MssI	GTTTAAAC	1 cut(s)	363
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 881
NciI	CCSGG	2 cut(s)	88, 590
NcoI	CCATGG	2 cut(s)	870, 926
NdeI	CATATG	1 cut(s)	1041
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	9 cut(s)	262, 673, 730, 874, 905, 930, 1282, 1291, 1348
NlaIV	GGNNCC	3 cut(s)	78, 894, 1020
NmuCI	GTSAC	2 cut(s)	800, 1297
NsiI	ATGCAT	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	2 cut(s)	205, 809
PkrI	GCNGC	3 cut(s)	908, 1224, 1330
PleI	GAGTC	3 cut(s)	432, 1081, 1091
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	3 cut(s)	432, 1081, 1091
Psp124BI	GAGCTC	1 cut(s)	1179
PspEI	GGTNACC	1 cut(s)	584
PspFI	CCCAGC	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	78, 894, 1020
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	2 cut(s)	1385, 1440
RsaNI	GTAC	2 cut(s)	1384, 1439
SacI	GAGCTC	1 cut(s)	1179
SapI	GCTCTTC	1 cut(s)	796
SaqAI	TTAA	4 cut(s)	362, 845, 1190, 1350
SatI	GCNGC	3 cut(s)	907, 1223, 1329
Sau3AI	GATC	1 cut(s)	546
SchI	GAGTC	3 cut(s)	433, 1082, 1092
ScrFI	CCNGG	2 cut(s)	88, 590
SduI	GDGCHC	1 cut(s)	1179
SfaNI	GCATC	2 cut(s)	417, 962
SfcI	CTRYAG	3 cut(s)	237, 486, 1134
SmlI	CTYRAG	2 cut(s)	6, 499
SmoI	CTYRAG	2 cut(s)	6, 499
Sse9I	AATT	7 cut(s)	154, 369, 440, 599, 821, 877, 1003
SsiI	CCGC	4 cut(s)	375, 783, 907, 1220
SspMI	CTAG	2 cut(s)	101, 1367
SstI	GAGCTC	1 cut(s)	1179
StyD4I	CCNGG	2 cut(s)	86, 588
StyI	CCWWGG	2 cut(s)	870, 926
TaaI	ACNGT	5 cut(s)	238, 249, 313, 337, 1244
TaqI	TCGA	1 cut(s)	444
TasI	AATT	7 cut(s)	154, 369, 440, 599, 821, 877, 1003
TatI	WGTACW	1 cut(s)	1383
TauI	GCSGC	1 cut(s)	909
TfiI	GAWTC	2 cut(s)	205, 809
Tru1I	TTAA	4 cut(s)	362, 845, 1190, 1350
Tru9I	TTAA	4 cut(s)	362, 845, 1190, 1350
TscAI	CASTG	5 cut(s)	241, 252, 342, 522, 582
TseFI	GTSAC	2 cut(s)	800, 1297
TseI	GCWGC	2 cut(s)	1222, 1328
Tsp45I	GTSAC	2 cut(s)	800, 1297
TspRI	CASTG	5 cut(s)	241, 252, 342, 522, 582
XapI	RAATTY	3 cut(s)	369, 440, 1003
XmiI	GTMKAC	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	2 cut(s)	101, 1367
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.