Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001911

Physical Location & Seq

Genomic Coordinates Forward (+)

22383042 .. 22384266

Gene Structure 1225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1153600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTTCTTAAAGAAGCACTCCCAAGTGCTTTTACAAGTAATATTTGGATTTACAGAAGCAGATATGTGCTGGAGTACTTCAAAGACAATGAAGCTGTGACTGAAGACAATTGTTCTACTAAGCAAATCAAGGGGTATAAATGTGTGCTCGATTCGAAGGCAACAGAAGACAATTTGGATAAATTTGCAAGATGGGAGCCTGCACATGGAAGTTTCAACTTCAAACATCCATGGAAACAGTACCTCAAGATTGGCGCATCGATGCGCAGTTGTGCTTACTGCGTCAAGGCTCTCAGCGCTTGTATGGAGTCGGAAATTAAGACGCCGGCTAGAATCGGAAACCTAAAGAAGCATTTCAGCAATGCCTGTAAGACAACAAACATACATTCTTCAGACATCTTGACAGAAATGGTGAAAACAATTAAAACCATGAAAAAATCATCTGAGATTGACTCATTGGTTTGGGAGATGAACAAAGCAGTGCAGGAGCTTCAAAAATCTTTGAAATCTGTGCCTATCTGGCTTGTTTTACCGACATCAGAAGCAACCGATGATGATGGCAAAGGAGAACCCATCGTAGCACCACTGGTGGAGGTTCTTCCGGTGACCACATTGGTGTCTTTGCTGATTGAAAATGCAGCAAGAATCAGTGGAATTGTTGATGCAGTCAATGAGCTTGCAGGCCAGGCAGATATGAAGCCTGCACCCCAAGGAAATAAAACGCAACACCAGACCGGTGACAAGCCCTCTGCAGGAGAGAAACTTCCATTCAACGGGAATGTCACTGTGACAGTTCCCCATGCCAATTGCGCATTGCCGTATGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

277

Amino Acids

30.46

Weight (kDa)

8.07

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	24 - 177	8.4e-43	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00910
fragaria_vesca	FvH4_4g16071 FvH4_5g11291
malus_domestica	MD06G1114500.v1.1 MD07G1153600.v1.1 MD14G1135700.v1.1 MD14G1135900.v1.1
prunus_persica	Prupe.2G192500_v2.0.a1 Prupe.5G127200_v2.0.a1
pyrus_communis	pycom07g15140
rosa_chinensis	RchiOBHm_Chr1g0360401 RchiOBHm_Chr3g0450301 RchiOBHm_Chr7g0186561
rosa_laevigata	RLG00000004835 RLG00000027810
rosa_multiflora	Rmu_co8404289.1_g000001 Rmu_sc0000645.1_g000020 Rmu_sc0005298.1_g000005 Rmu_sc0007722.1_g000021 Rmu_ssc0000368.1_g000080
rosa_roxburghii	Rroxscaffold_3G00268050 Rroxscaffold_4G00296140 Rroxscaffold_6G00428020
rosa_rugosa	Rorug01G0276700 Rorug02G0626700 Rorug06G0475100
rosa_samantha	Rh1AG290700 Rh1BG255800 Rh1CG273500 Rh1DG285600 Rh3AG026300 Rh3AG026900 Rh3BG027000 Rh3BG027500 Rh3CG026000 Rh3CG026400 Rh3DG026900 Rh3DG027400 Rh7AG066000 Rh7BG081900 Rh7CG081800 Rh7DG082800
rosa_wichuraiana	Rw1G025740 Rw3G002110 Rw7G006880 Rw7G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	266, 811
Acc65I	GGTACC	1 cut(s)	824
AccB1I	GGYRCC	1 cut(s)	824
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	123, 375
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	3 cut(s)	77, 242, 826
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	206, 752, 773
AgeI	ACCGGT	1 cut(s)	734
AgsI	TTSAA	7 cut(s)	82, 217, 223, 494, 505, 632, 772
AjnI	CCWGG	1 cut(s)	684
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	3 cut(s)	95, 490, 676
AluI	AGCT	3 cut(s)	95, 490, 676
Alw21I	GWGCWC	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	182
AsiGI	ACCGGT	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	824
AspLEI	GCGC	4 cut(s)	257, 267, 299, 812
AsuHPI	GGTGA	3 cut(s)	424, 616, 749
AsuII	TTCGAA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	111, 174
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	3 cut(s)	186, 551, 581
BceAI	ACGGC	1 cut(s)	802
BciT130I	CCWGG	1 cut(s)	686
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	520
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	686
BmiI	GGNNCC	2 cut(s)	198, 826
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	3 cut(s)	252, 266, 652
BpiI	GAAGAC	2 cut(s)	111, 174
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	230, 709
BsaWI	WCCGGW	2 cut(s)	601, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 752, 773
Bse118I	RCCGGY	2 cut(s)	325, 734
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	367, 812
BseBI	CCWGG	1 cut(s)	686
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	230, 709
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	206, 752, 773
BseMI	GCAATG	2 cut(s)	367, 812
BseMII	CTCAG	2 cut(s)	307, 435
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	650
BsgI	GTGCAG	3 cut(s)	186, 503, 687
BshFI	GGCC	1 cut(s)	684
BshNI	GGYRCC	1 cut(s)	824
BshTI	ACCGGT	1 cut(s)	734
BshVI	ATCGAT	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	3 cut(s)	326, 602, 735
BslI	CCNNNNNNNGG	3 cut(s)	206, 752, 773
BsnI	GGCC	1 cut(s)	684
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	230
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	2 cut(s)	306, 436
BspDI	ATCGAT	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	198, 826
BspMAI	CTGCAG	1 cut(s)	754
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	367, 812
BsrFI	RCCGGY	2 cut(s)	325, 734
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	2 cut(s)	325, 734
BssECI	CCNNGG	2 cut(s)	230, 709
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	2 cut(s)	230, 709
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	3 cut(s)	240, 787, 793
BstACI	GRCGYC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	5 cut(s)	201, 327, 678, 682, 702
BstDEI	CTNAG	3 cut(s)	120, 293, 444
BstDSI	CCRYGG	1 cut(s)	230
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	4 cut(s)	257, 267, 299, 812
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 520, 686, 809
BstNI	CCWGG	1 cut(s)	686
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	2 cut(s)	111, 174
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	684
BsuTUI	ATCGAT	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	4 cut(s)	486, 584, 655, 783
Cac8I	GCNNGC	5 cut(s)	201, 327, 678, 682, 702
CfoI	GCGC	4 cut(s)	257, 267, 299, 812
Cfr10I	RCCGGY	2 cut(s)	325, 734
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	2 cut(s)	271, 331
Csp6I	GTAC	3 cut(s)	76, 241, 825
CspAI	ACCGGT	1 cut(s)	734
CviAII	CATG	4 cut(s)	206, 231, 430, 800
CviQI	GTAC	3 cut(s)	76, 241, 825
DdeI	CTNAG	3 cut(s)	120, 293, 444
Eco130I	CCWWGG	2 cut(s)	230, 709
Eco47III	AGCGCT	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	123, 375
Eco91I	GGTNACC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	2 cut(s)	230, 709
ErhI	CCWWGG	2 cut(s)	230, 709
FaeI	CATG	4 cut(s)	209, 234, 433, 803
FatI	CATG	4 cut(s)	205, 230, 429, 799
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	330
FspI	TGCGCA	2 cut(s)	266, 811
GlaI	GCGC	4 cut(s)	256, 266, 298, 811
GluI	GCNGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	3 cut(s)	326, 602, 735
HgaI	GACGC	2 cut(s)	271, 331
HhaI	GCGC	4 cut(s)	257, 267, 299, 812
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	209, 234, 433, 803
Hin6I	GCGC	4 cut(s)	255, 265, 297, 810
HinP1I	GCGC	4 cut(s)	255, 265, 297, 810
HinfI	GANTC	5 cut(s)	152, 308, 333, 452, 645
HpaII	CCGG	3 cut(s)	326, 602, 735
HphI	GGTGA	3 cut(s)	424, 616, 749
Hpy188I	TCNGA	5 cut(s)	313, 338, 394, 445, 541
Hpy188III	TCNNGA	2 cut(s)	247, 400
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	3 cut(s)	240, 787, 793
HpyCH4V	TGCA	8 cut(s)	188, 203, 484, 638, 665, 680, 704, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 520, 686, 809
HpyF3I	CTNAG	3 cut(s)	120, 293, 444
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	209, 234, 433, 803
HspAI	GCGC	4 cut(s)	255, 265, 297, 810
KpnI	GGTACC	1 cut(s)	828
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	196, 487
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	3 cut(s)	252, 266, 652
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	5 cut(s)	97, 604, 737, 781, 787
MboII	GAAGA	4 cut(s)	116, 179, 381, 590
MfeI	CAATTG	2 cut(s)	109, 805
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	7 cut(s)	109, 172, 182, 315, 420, 654, 805
MlyI	GAGTC	2 cut(s)	317, 446
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	254, 586, 757
MroNI	GCCGGC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	9, 318, 423
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	3 cut(s)	326, 602, 735
MspR9I	CCNGG	1 cut(s)	686
MunI	CAATTG	2 cut(s)	109, 805
MvaI	CCWGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	4 cut(s)	296, 520, 686, 809
NaeI	GCCGGC	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	230
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	4 cut(s)	209, 234, 433, 803
NlaIV	GGNNCC	2 cut(s)	198, 826
NmuCI	GTSAC	5 cut(s)	97, 604, 737, 781, 787
NsbI	TGCGCA	2 cut(s)	266, 811
NspV	TTCGAA	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	152, 333, 645
PinAI	ACCGGT	1 cut(s)	734
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	2 cut(s)	316, 446
PpsI	GAGTC	2 cut(s)	316, 446
Psp6I	CCWGG	1 cut(s)	684
PspEI	GGTNACC	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	2 cut(s)	198, 826
PstI	CTGCAG	1 cut(s)	754
RsaI	GTAC	3 cut(s)	77, 242, 826
RsaNI	GTAC	3 cut(s)	76, 241, 825
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	9, 318, 423
SatI	GCNGC	1 cut(s)	639
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	2 cut(s)	317, 446
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	97, 246, 345, 492, 597, 678, 830
SfaNI	GCATC	3 cut(s)	252, 266, 652
SfcI	CTRYAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	7 cut(s)	109, 172, 182, 315, 420, 654, 805
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	2 cut(s)	230, 709
TaaI	ACNGT	3 cut(s)	240, 787, 793
TaqI	TCGA	3 cut(s)	150, 155, 260
TasI	AATT	7 cut(s)	109, 172, 182, 315, 420, 654, 805
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	152, 333, 645
Tru1I	TTAA	3 cut(s)	9, 318, 423
Tru9I	TTAA	3 cut(s)	9, 318, 423
TscAI	CASTG	4 cut(s)	486, 591, 655, 790
TseFI	GTSAC	5 cut(s)	97, 604, 737, 781, 787
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	5 cut(s)	97, 604, 737, 781, 787
TspDTI	ATGAA	4 cut(s)	105, 446, 485, 710
TspRI	CASTG	4 cut(s)	486, 591, 655, 790
XapI	RAATTY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.