Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Forward (+)

20597957 .. 20598973

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACAGAACAACATATCAATGTTCAAGAATTTAATTTGCTGCCTGCTGCTATTTCATCTGTTGATGAGGCGCGTGACACTTTCATGCAACTAGTGGCATTGTGCAAAGAATCTCTCAGAAAACTTCTTCTGAGAGGAGAATTTGTTGAGTATCCAGATGACAGGAGTATGCACGGCACTGTAAACCTTGCTATGGAGCTTTATCACTTCAAGGATGCACTTGGCTGCTTCCATCACATCTTTTCCAGGCGTGACATCGAAACTAACTTCCTACAGTCGGTGATCAAGTACTGTACAGGAAAAGCCGGTGATCATGCAGCAGAACTTACAGCGGATCTTACATCAAGTCTAGCTGAGTGGGAACATCGCCTTCATGCTCGGTTTCTGAAATCGTTCTGGTGGCATGTGATCATGGAAGTTACTCAGGTCGTTCAGTGGATACAGGAGAATCATGGTGCAGTGAATGTGAATGAGGAGAAACAGCAAGAGAACTTTTCTTCCGAGTATACCAGACTAATGTCCAAATGCAATGATTTCATTTACGGAGTATTTGATGATCCGCACAAGCCTGCTACAATTAATGTGGACGGCATTGGGGAGATTGTGGTTGGAAATCTGAGGAGTTACTCTCGTGATCTACTATCTGAAGCCTTTAGCACCTACTGGCCGGAGACATACATAGATGTGGAGATTATGCAGATCCTGAAGATGCCAGTTTTTGCTCATTTGTTTGAGGATATGCTTGAGAAATATCCTTTGGCACGCAAGAGTCTTGAAAAGAGAATCAACATTCTCATGAAAGCTAAGGAGATCTGTGAGGGGACCATGGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Dynamin_N

Protein Analysis

280

Amino Acids

32.42

Weight (kDa)

5.18

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	332, 560
AclWI	GGATC	3 cut(s)	342, 551, 694
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	2 cut(s)	29, 140
AcuI	CTGAAG	2 cut(s)	666, 725
AfaI	GTAC	2 cut(s)	290, 295
AfiI	CCNNNNNNNGG	2 cut(s)	193, 277
AgsI	TTSAA	3 cut(s)	26, 211, 776
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	199, 353, 803
AluI	AGCT	3 cut(s)	199, 353, 803
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	342, 551, 694
AlwNI	CAGNNNCTG	1 cut(s)	703
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	4 cut(s)	40, 47, 225, 317
ApoI	RAATTY	2 cut(s)	29, 140
AseI	ATTAAT	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	2 cut(s)	292, 320
AvaII	GGWCC	1 cut(s)	822
BauI	CACGAG	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	27, 34, 212, 329
BccI	CCATC	1 cut(s)	240
BceAI	ACGGC	2 cut(s)	190, 604
BciT130I	CCWGG	1 cut(s)	247
BciVI	GTATCC	2 cut(s)	162, 432
BclI	TGATCA	3 cut(s)	282, 310, 408
BcoDI	GTCTC	1 cut(s)	665
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 350
BfmI	CTRYAG	1 cut(s)	272
BfuI	GTATCC	2 cut(s)	162, 432
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	4 cut(s)	41, 48, 226, 318
BlsI	GCNGC	4 cut(s)	42, 49, 227, 319
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	823
BmrFI	CCNGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	205, 699
BoxI	GACNNNNGTC	1 cut(s)	517
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
Bpu10I	CCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	825
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 277
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	668, 713
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	2 cut(s)	220, 835
BseLI	CCNNNNNNNGG	2 cut(s)	193, 277
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	5 cut(s)	122, 130, 345, 437, 608
BseNI	ACTGG	2 cut(s)	668, 713
BseRI	GAGGAG	3 cut(s)	150, 488, 634
BseXI	GCAGC	4 cut(s)	27, 34, 212, 329
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	306, 668
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	2 cut(s)	193, 277
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	835
BsnI	GGCC	1 cut(s)	667
Bsp1407I	TGTACA	1 cut(s)	293
Bsp143I	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	2 cut(s)	332, 560
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	5 cut(s)	123, 129, 346, 436, 609
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	823
BspPI	GGATC	3 cut(s)	342, 551, 694
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	668, 713
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
BssNAI	GTATAC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	825
Bst1107I	GTATAC	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	3 cut(s)	181, 276, 293
BstAUI	TGTACA	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	45, 570, 763
BstDEI	CTNAG	6 cut(s)	116, 131, 354, 423, 617, 804
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	2 cut(s)	220, 835
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	8 cut(s)	285, 313, 337, 411, 559, 637, 702, 813
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	407
BstPAI	GACNNNNGTC	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	27, 34, 212, 329
BstX2I	RGATCY	3 cut(s)	334, 699, 810
BstYI	RGATCY	3 cut(s)	334, 699, 810
BstZ17I	GTATAC	1 cut(s)	507
BsuI	GTATCC	2 cut(s)	162, 432
BsuRI	GGCC	1 cut(s)	667
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	220, 835
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	177, 440, 465
Cac8I	GCNNGC	3 cut(s)	45, 570, 763
CaiI	CAGNNNCTG	1 cut(s)	703
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	2 cut(s)	289, 294
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	8 cut(s)	85, 314, 374, 404, 412, 452, 796, 826
CviJI	RGCY	8 cut(s)	199, 225, 305, 353, 568, 650, 667, 803
CviKI_1	RGCY	8 cut(s)	199, 225, 305, 353, 568, 650, 667, 803
CviQI	GTAC	2 cut(s)	289, 294
DdeI	CTNAG	6 cut(s)	116, 131, 354, 423, 617, 804
DpnI	GATC	8 cut(s)	284, 312, 336, 410, 558, 636, 701, 812
DpnII	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
EaeI	YGGCCR	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	2 cut(s)	666, 725
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	8 cut(s)	88, 317, 377, 407, 415, 455, 799, 829
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	8 cut(s)	84, 313, 373, 403, 411, 451, 795, 825
FbaI	TGATCA	3 cut(s)	282, 310, 408
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	4 cut(s)	41, 48, 226, 318
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	41, 48, 226, 318
FspBI	CTAG	2 cut(s)	92, 350
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	41, 48, 226, 318
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	2 cut(s)	306, 668
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	8 cut(s)	88, 317, 377, 407, 415, 455, 799, 829
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	110, 448, 769, 783
HpaII	CCGG	2 cut(s)	306, 668
HphI	GGTGA	2 cut(s)	292, 320
Hpy166II	GTNNAC	3 cut(s)	184, 507, 586
Hpy188I	TCNGA	6 cut(s)	119, 132, 387, 502, 618, 646
Hpy188III	TCNNGA	6 cut(s)	26, 155, 632, 703, 773, 796
Hpy8I	GTNNAC	3 cut(s)	184, 507, 586
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	3 cut(s)	181, 276, 293
HpyCH4V	TGCA	8 cut(s)	88, 105, 172, 218, 317, 458, 528, 697
HpyF3I	CTNAG	6 cut(s)	116, 131, 354, 423, 617, 804
Hsp92II	CATG	8 cut(s)	88, 317, 377, 407, 415, 455, 799, 829
HspAI	GCGC	1 cut(s)	71
Ksp22I	TGATCA	3 cut(s)	282, 310, 408
Kzo9I	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	4 cut(s)	27, 34, 212, 329
LweI	GCATC	2 cut(s)	205, 699
MaeI	CTAG	2 cut(s)	92, 350
MaeIII	GTNAC	4 cut(s)	74, 251, 418, 623
MalI	GATC	8 cut(s)	284, 312, 336, 410, 558, 636, 701, 812
MboI	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
MboII	GAAGA	3 cut(s)	119, 489, 718
MflI	RGATCY	3 cut(s)	334, 699, 810
MluCI	AATT	4 cut(s)	29, 34, 140, 576
MlyI	GAGTC	1 cut(s)	778
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	6 cut(s)	61, 128, 466, 612, 727, 811
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	33, 579
MslI	CAYNNNNRTG	4 cut(s)	18, 83, 683, 794
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	306, 668
MspR9I	CCNGG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	825
NdeII	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
NlaIII	CATG	8 cut(s)	88, 317, 377, 407, 415, 455, 799, 829
NlaIV	GGNNCC	1 cut(s)	823
NmuCI	GTSAC	2 cut(s)	74, 251
NspI	RCATGY	1 cut(s)	407
PagI	TCATGA	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	110, 448, 783
PkrI	GCNGC	4 cut(s)	42, 49, 227, 319
PleI	GAGTC	1 cut(s)	777
PpsI	GAGTC	1 cut(s)	777
PshAI	GACNNNNGTC	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	823
PspPI	GGNCC	1 cut(s)	822
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	3 cut(s)	334, 699, 810
RsaI	GTAC	2 cut(s)	290, 295
RsaNI	GTAC	2 cut(s)	289, 294
RseI	CAYNNNNRTG	4 cut(s)	18, 83, 683, 794
SaqAI	TTAA	2 cut(s)	33, 579
SatI	GCNGC	4 cut(s)	41, 48, 226, 318
Sau3AI	GATC	8 cut(s)	282, 310, 334, 408, 556, 634, 699, 810
Sau96I	GGNCC	1 cut(s)	822
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	778
ScrFI	CCNGG	1 cut(s)	247
SetI	ASST	6 cut(s)	189, 201, 355, 429, 662, 805
SfaNI	GCATC	2 cut(s)	205, 699
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	4 cut(s)	18, 83, 683, 794
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	4 cut(s)	29, 34, 140, 576
SsiI	CCGC	2 cut(s)	332, 560
SspMI	CTAG	2 cut(s)	92, 350
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	3 cut(s)	181, 276, 293
TaqI	TCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	29, 34, 140, 576
TatI	WGTACW	2 cut(s)	288, 293
TfiI	GAWTC	3 cut(s)	110, 448, 783
Tru1I	TTAA	2 cut(s)	33, 579
Tru9I	TTAA	2 cut(s)	33, 579
TscAI	CASTG	3 cut(s)	184, 440, 465
TseFI	GTSAC	2 cut(s)	74, 251
TseI	GCWGC	4 cut(s)	40, 47, 225, 317
Tsp45I	GTSAC	2 cut(s)	74, 251
TspDTI	ATGAA	5 cut(s)	45, 73, 362, 526, 812
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	3 cut(s)	184, 440, 465
VpaK11BI	GGWCC	1 cut(s)	822
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	2 cut(s)	29, 140
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	2 cut(s)	92, 350
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.