RLG00000000898

mitochondrial fission

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009680
Physical Location & Seq
Reverse (-)
7725888 .. 7726830
943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000898

Sequence Viewer

Length: 630 bp
ATGACGCTGACCAAAGAATCGCTCAGAAAAACTCTTGTGAGAGGGGAATTTGATGAGTTCCTAGATGATGAGATGCATGGCACTGGAAAGCTAGCTGAGATGCTCAAGCAGTTCTCGGATGAGCTTGACCAATTTCATCACGATTATGGTCTTCGTGACCTCAAAAATAACTTCTTAGAGACCGAAATCAACTATATCCTTAATACTCGGGATGCTGTGGAATTCATATATGGAGTCCTTGATGATAAGAAAAAGCCCTCTACAATAGTTGTGGAGGGCATTGGGGAGATTGAAGTTGAGGGTCTGAGGAAGTACTCACGAGATGTAATATCCCGAGCCTTTGGTGTCAAAATGAATGAGATTGCATATTGGAAAATGTTCGCAAGAATATTTGTTGAACGTTTGGCTTCACATTTGAAGTTAAGTGTTGCAAACCTTGTGGACACATACAAGGATGTGGAGGTGTCTGATATGCAGATGTTGAAGGGGCCAGAATATGGTTTCGGATTAAAGGAGATGCTGGAGAAATATCCTTTGGCGCGCAAGGATCTTCAAAAAAGAATCGAAATGCTCAAGAAAGCCAAGGAGATTTGTGATGGCATCCATCATGGGTGCTTTTTGTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Dynamin_N

Protein Analysis

210

Amino Acids

24.31

Weight (kDa)

5.76

Isoelectric Point (pI)

25.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 1 cut(s) 541
AclI AACGTT 1 cut(s) 400
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 2 cut(s) 47, 221
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 5 cut(s) 293, 398, 418, 484, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 3 cut(s) 91, 95, 124
AluI AGCT 3 cut(s) 91, 95, 124
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 555
Ama87I CYCGRG 2 cut(s) 207, 333
AoxI GGCC 1 cut(s) 488
ApoI RAATTY 2 cut(s) 47, 221
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 2 cut(s) 541, 543
AspS9I GGNCC 1 cut(s) 488
AsuNHI GCTAGC 1 cut(s) 91
AvaI CYCGRG 2 cut(s) 207, 333
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 143
BccI CCATC 2 cut(s) 590, 612
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 62, 92
BmcAI AGTACT 1 cut(s) 314
BmeT110I CYCGRG 2 cut(s) 207, 333
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 489
BmsI GCATC 5 cut(s) 63, 90, 202, 507, 609
BmtI GCTAGC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 542
BpuEI CTTGAG 2 cut(s) 89, 557
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 582
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 4 cut(s) 124, 217, 460, 600
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 3 cut(s) 37, 87, 296
BseNI ACTGG 1 cut(s) 88
BsePI GCGCGC 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 207, 333
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 490
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 2 cut(s) 207, 333
Bsp143I GATC 1 cut(s) 547
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 3 cut(s) 36, 88, 297
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 1 cut(s) 489
BspOI GCTAGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 555
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 582
BssHII GCGCGC 1 cut(s) 539
BssMI GATC 1 cut(s) 547
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 93, 541
BstDEI CTNAG 4 cut(s) 23, 96, 175, 305
BstF5I GGATG 4 cut(s) 124, 217, 460, 600
BstFNI CGCG 1 cut(s) 541
BstHHI GCGC 2 cut(s) 541, 543
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 1 cut(s) 621
BstUI CGCG 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 1 cut(s) 490
BtsCI GGATG 4 cut(s) 124, 217, 460, 600
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 93, 541
CfoI GCGC 2 cut(s) 541, 543
Cfr13I GGNCC 1 cut(s) 488
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 313
CspCI CAANNNNNGTGG 4 cut(s) 252, 287, 420, 455
CviAII CATG 2 cut(s) 77, 608
CviJI RGCY 8 cut(s) 91, 95, 124, 256, 338, 407, 490, 581
CviKI_1 RGCY 8 cut(s) 91, 95, 124, 256, 338, 407, 490, 581
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 4 cut(s) 23, 96, 175, 305
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 207, 333
EcoRI GAATTC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 582
EcoT22I ATGCAT 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 2 cut(s) 80, 611
FatI CATG 2 cut(s) 76, 607
FokI GGATG 4 cut(s) 131, 224, 467, 587
FspBI CTAG 2 cut(s) 62, 92
GlaI GCGC 2 cut(s) 540, 542
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 1 cut(s) 490
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 541, 543
Hin1II CATG 2 cut(s) 80, 611
Hin6I GCGC 2 cut(s) 539, 541
HinP1I GCGC 2 cut(s) 539, 541
HinfI GANTC 3 cut(s) 17, 234, 561
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 5 cut(s) 26, 118, 306, 469, 506
Hpy188III TCNNGA 6 cut(s) 140, 155, 209, 318, 333, 574
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 5 cut(s) 76, 365, 431, 475, 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 621
HpyF3I CTNAG 4 cut(s) 23, 96, 175, 305
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 2 cut(s) 80, 611
HspAI GCGC 2 cut(s) 539, 541
Kzo9I GATC 1 cut(s) 547
LpnPI CCDG 3 cut(s) 69, 504, 506
LweI GCATC 5 cut(s) 63, 90, 202, 507, 609
MaeI CTAG 2 cut(s) 62, 92
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 2 cut(s) 143, 542
MflI RGATCY 1 cut(s) 547
MluCI AATT 4 cut(s) 47, 131, 221, 625
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 7 cut(s) 35, 170, 268, 268, 292, 300, 454
Mph1103I ATGCAT 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 4 cut(s) 201, 422, 509, 628
MslI CAYNNNNRTG 1 cut(s) 144
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 621
NdeII GATC 1 cut(s) 547
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 80, 611
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 78
PauI GCGCGC 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 2 cut(s) 17, 561
PflMI CCANNNNNTGG 1 cut(s) 497
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp1406I AACGTT 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 488
PsuI RGATCY 1 cut(s) 547
PteI GCGCGC 1 cut(s) 539
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 4 cut(s) 201, 422, 509, 628
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 1 cut(s) 243
SetI ASST 7 cut(s) 93, 97, 126, 162, 403, 438, 465
SfaNI GCATC 5 cut(s) 63, 90, 202, 507, 609
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 104, 572
SmoI CTYRAG 2 cut(s) 104, 572
Sse9I AATT 4 cut(s) 47, 131, 221, 625
SspI AATATT 1 cut(s) 390
SspMI CTAG 2 cut(s) 62, 92
StyI CCWWGG 1 cut(s) 582
TaiI ACGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 564
TaqII GACCGA 1 cut(s) 197
TasI AATT 4 cut(s) 47, 131, 221, 625
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 2 cut(s) 17, 561
Tru1I TTAA 4 cut(s) 201, 422, 509, 628
Tru9I TTAA 4 cut(s) 201, 422, 509, 628
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 125, 214, 368
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 2 cut(s) 47, 221
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 2 cut(s) 62, 92
ZrmI AGTACT 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.