Rmu_co8180380.1_g000001

mitochondrial fission

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8180380.1
OG0009680
Physical Location & Seq
Reverse (-)
1 .. 534
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8180380.1_g000001.1.cds

Sequence Viewer

Length: 464 bp
atgccagtcccaaccagagctagagacttgccagagattgctaagaagatcgatgccaagctcagttactgcctctcggaacttaatttgctgcctgctagtatttcatcggttgatgaggcggttgccactttcatgcaactggtggcattgtccaaagaatctctcataaaaattcttgtgagaggagaatttgatgagtatcctgatgacaagagcatgcacggcactgcaaacctggctgagatgctcaatcagttcaaggatgaacgtggctggctgcattccagctttttccgacgtgacctcaaaagtaacttcctacagtcggagatcaactactgtatgtttactcagcaggtgggaaaagccagtggtcttgcagagaaacttgccgcggatcttacagcagatctagtcgcggtggaacatcaccatgattcctggtttctggatatgttctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Dynamin_N

Protein Analysis

154

Amino Acids

17.41

Weight (kDa)

5.16

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 349
AccII CGCG 2 cut(s) 398, 422
AciI CCGC 4 cut(s) 122, 396, 398, 422
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 2 cut(s) 174, 191
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 262
AjiI CACGTC 1 cut(s) 302
AjnI CCWGG 2 cut(s) 237, 443
AluBI AGCT 3 cut(s) 20, 61, 291
AluI AGCT 3 cut(s) 20, 61, 291
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 91, 280
ApoI RAATTY 2 cut(s) 174, 191
AsuHPI GGTGA 1 cut(s) 425
BbvI GCAGC 2 cut(s) 78, 267
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 2 cut(s) 239, 445
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 3 cut(s) 21, 99, 416
BfmI CTRYAG 1 cut(s) 323
BfuAI ACCTGC 1 cut(s) 349
BfuI GTATCC 1 cut(s) 213
BglII AGATCT 1 cut(s) 412
BisI GCNGC 3 cut(s) 92, 281, 396
BlsI GCNGC 3 cut(s) 93, 282, 397
Bme1390I CCNGG 2 cut(s) 239, 445
BmgBI CACGTC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 239, 445
BmsI GCATC 2 cut(s) 43, 237
Bsa29I ATCGAT 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 3 cut(s) 5, 147, 372
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 239, 445
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 3 cut(s) 76, 234, 368
BseNI ACTGG 3 cut(s) 5, 147, 372
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 78, 267
Bsh1236I CGCG 2 cut(s) 398, 422
BshVI ATCGAT 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 48, 333, 400, 412
BspACI CCGC 4 cut(s) 122, 396, 398, 422
BspCNI CTCAG 3 cut(s) 75, 235, 367
BspDI ATCGAT 1 cut(s) 51
BspFNI CGCG 2 cut(s) 398, 422
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 408
BsrI ACTGG 3 cut(s) 5, 147, 372
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 4 cut(s) 48, 333, 400, 412
Bst2UI CCWGG 2 cut(s) 239, 445
Bst4CI ACNGT 2 cut(s) 327, 344
BstC8I GCNNGC 3 cut(s) 96, 221, 278
BstDEI CTNAG 4 cut(s) 42, 62, 243, 354
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 2 cut(s) 398, 422
BstKTI GATC 4 cut(s) 51, 336, 403, 415
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 4 cut(s) 48, 333, 400, 412
BstMWI GCNNNNNNNGC 2 cut(s) 225, 239
BstNI CCWGG 2 cut(s) 239, 445
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 237, 443
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 2 cut(s) 398, 422
BstV1I GCAGC 2 cut(s) 78, 267
BstX2I RGATCY 2 cut(s) 400, 412
BstYI RGATCY 2 cut(s) 400, 412
Bsu15I ATCGAT 1 cut(s) 51
BsuI GTATCC 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 396
BtrI CACGTC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 228, 379
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 3 cut(s) 96, 221, 278
CaiI CAGNNNCTG 1 cut(s) 69
Cfr42I CCGCGG 1 cut(s) 399
ClaI ATCGAT 1 cut(s) 51
CviAII CATG 3 cut(s) 136, 220, 437
CviJI RGCY 7 cut(s) 20, 61, 242, 276, 280, 291, 371
CviKI_1 RGCY 7 cut(s) 20, 61, 242, 276, 280, 291, 371
DdeI CTNAG 4 cut(s) 42, 62, 243, 354
DpnI GATC 4 cut(s) 50, 335, 402, 414
DpnII GATC 4 cut(s) 48, 333, 400, 412
EcoRII CCWGG 2 cut(s) 237, 443
FaeI CATG 3 cut(s) 139, 223, 440
FaiI YATR 6 cut(s) 137, 170, 221, 347, 438, 458
FatI CATG 3 cut(s) 135, 219, 436
Fnu4HI GCNGC 3 cut(s) 92, 281, 396
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 92, 281, 396
FspBI CTAG 3 cut(s) 21, 99, 416
GluI GCNGC 3 cut(s) 92, 281, 396
Hin1II CATG 3 cut(s) 139, 223, 440
HinfI GANTC 2 cut(s) 161, 440
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 3 cut(s) 79, 299, 331
Hpy188III TCNNGA 2 cut(s) 206, 452
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 327, 344
HpyCH4IV ACGT 2 cut(s) 271, 301
HpyCH4V TGCA 5 cut(s) 139, 223, 233, 283, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 239
HpyF3I CTNAG 4 cut(s) 42, 62, 243, 354
HpySE526I ACGT 2 cut(s) 271, 301
Hsp92II CATG 3 cut(s) 139, 223, 440
KspI CCGCGG 1 cut(s) 399
Kzo9I GATC 4 cut(s) 48, 333, 400, 412
Lsp1109I GCAGC 2 cut(s) 78, 267
LweI GCATC 2 cut(s) 43, 237
MaeI CTAG 3 cut(s) 21, 99, 416
MaeII ACGT 2 cut(s) 271, 301
MaeIII GTNAC 3 cut(s) 65, 302, 314
MalI GATC 4 cut(s) 50, 335, 402, 414
MboI GATC 4 cut(s) 48, 333, 400, 412
MboII GAAGA 1 cut(s) 58
MflI RGATCY 2 cut(s) 400, 412
MluCI AATT 3 cut(s) 85, 174, 191
MmeI TCCRAC 2 cut(s) 309, 322
MnlI CCTC 4 cut(s) 83, 112, 179, 317
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 134, 435
MspA1I CMGCKG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 239, 445
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 2 cut(s) 239, 445
MvnI CGCG 2 cut(s) 398, 422
MwoI GCNNNNNNNGC 2 cut(s) 225, 239
NdeII GATC 4 cut(s) 48, 333, 400, 412
NlaIII CATG 3 cut(s) 139, 223, 440
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 223
PaeI GCATGC 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 349
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 161, 440
PkrI GCNGC 3 cut(s) 93, 282, 397
Psp6I CCWGG 2 cut(s) 237, 443
PspGI CCWGG 2 cut(s) 237, 443
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 400, 412
RseI CAYNNNNRTG 2 cut(s) 134, 435
SacII CCGCGG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 92, 281, 396
Sau3AI GATC 4 cut(s) 48, 333, 400, 412
ScrFI CCNGG 2 cut(s) 239, 445
SetI ASST 8 cut(s) 22, 63, 240, 274, 293, 304, 309, 363
SfaNI GCATC 2 cut(s) 43, 237
SfcI CTRYAG 1 cut(s) 323
Sfr303I CCGCGG 1 cut(s) 399
SgrBI CCGCGG 1 cut(s) 399
SmiMI CAYNNNNRTG 2 cut(s) 134, 435
SphI GCATGC 1 cut(s) 223
Sse9I AATT 3 cut(s) 85, 174, 191
SsiI CCGC 4 cut(s) 122, 396, 398, 422
SspMI CTAG 3 cut(s) 21, 99, 416
StyD4I CCNGG 2 cut(s) 237, 443
TaaI ACNGT 2 cut(s) 327, 344
TaiI ACGT 2 cut(s) 274, 304
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 85, 174, 191
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 2 cut(s) 161, 440
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 235, 379
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 91, 280
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 96, 124, 282
TspRI CASTG 2 cut(s) 235, 379
XapI RAATTY 2 cut(s) 174, 191
XceI RCATGY 1 cut(s) 223
XspI CTAG 3 cut(s) 21, 99, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.