RchiOBHm_Chr4g0420311

mitochondrial fission

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009680
Physical Location & Seq
Forward (+)
45988399 .. 45989637
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39006

Sequence Viewer

Length: 1239 bp
ATGGGGAGAAAGAGAAAAAACAAATCATCAAGAGGTTCCAGGGAAAGAAAGACCAGATCAGAAATAGGAGTAGCAAGCCCAGATGCTGTAATTCCTCGTCGCAAGATCCGACATGTCATCAATTCTTGCAAGGAGGAAGGGATTGAAATTCCAGTCCCAACCAGAGCTAGAGACTTGCCAGAGATTGCTAAGAAGATCGATGCCAAGCTCAGTTACTGCCTCTCGGAACTTAATTTGCTGCCTGCTAGTATTTCATCGGTTGATGAGGCGGTTGCCACTTTCATGCAACTGGTGGCATTGTCCAAAGAATCTCTCATAAAAATTCTTGTGAGAGGAGAATTTGATGAGTATCCGGATGACAAGAGCATGCACGGCACTGCAAACCTGGCTGAGATGCTCAATCAGTTCAAGGATGAACGTGGCTGGCTGCATTCCAGCTTTTTCCTACGTGACCTCAAAAGTAACTTCCTACAGTCGGAGATCAACTACTGTATGTTTACTCAGCAGGTGGGAAAAGCCAGTGGTCTTGCAGAGAAACTTGCCGCGGATCTTACAGCAGATCTAGTTGCGGTGGAACATCACCATGATTCCTGGTTTCTGGATATGTTCTGGTATTACGTGATCATGCAAGTAACTCGTTCTGTGTTAATGACTTATCTATCGAGATATGTTCATTTTTGTATTCATGTTGTGTCACTTGTTTATAATCTAATGGACAAGATGATTCAGAGGTCGTATCAGTGGACGCATGAGAACTATTATACCGTGAATGTGAATGAGGAAAAAACGGATGAGTTTTTTTCCGAGTATACTAGACTTATGTCCAAATGCAATGTATTCATCCATGGAGTCCTTGATGATCCGGAAAAGCCCTCTACAATTATTGTAGACGGTATTGGGGAGATTGTGGTTGAAGGTCTTAGGAGTTACTCGCGTGATCTACTATCTGAAGCCATTAGCATCAGAATGCAATCAATTGCATTTCGGAAGATACATATAGAAACTTTTATTGAAGGTATGGCTTCTCATTTGCAGTCGAGTGTTGCAAACCTTCTGGACACATACATGGATTTGGAGATGTTCGATATGCAGATCTTGAAGAGGCCACATTTTGCTCATGTATTTGAGGATATGGTTGAGAACTATCCTTTGGCACGCAAGGGTCTTGAAAAGAGAATCAATATGCTCAAGAAAGCAAAGGAGATTTGTGAGGGGATCATGGATGCTTATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Dynamin_N

Protein Analysis

412

Amino Acids

47.6

Weight (kDa)

6.09

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 58 - 181 4.7e-08 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccI GTMKAC 2 cut(s) 809, 888
AccII CGCG 2 cut(s) 545, 934
AccIII TCCGGA 2 cut(s) 352, 862
AciI CCGC 4 cut(s) 269, 543, 545, 569
AclWI GGATC 4 cut(s) 100, 555, 854, 1223
AcsI RAATTY 3 cut(s) 147, 321, 338
AcuI CTGAAG 1 cut(s) 969
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 6 cut(s) 146, 409, 914, 1013, 1099, 1169
AjnI CCWGG 3 cut(s) 38, 384, 590
AjuI GAANNNNNNNTTGG 2 cut(s) 1133, 1165
AluBI AGCT 3 cut(s) 167, 208, 438
AluI AGCT 3 cut(s) 167, 208, 438
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 4 cut(s) 100, 555, 854, 1223
AlwNI CAGNNNCTG 2 cut(s) 86, 216
Aor13HI TCCGGA 2 cut(s) 352, 862
AoxI GGCC 1 cut(s) 1103
ApeKI GCWGC 2 cut(s) 238, 427
ApoI RAATTY 3 cut(s) 147, 321, 338
AsuHPI GGTGA 1 cut(s) 572
BbvI GCAGC 2 cut(s) 225, 414
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 3 cut(s) 40, 386, 592
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 621
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 4 cut(s) 168, 246, 563, 813
BfmI CTRYAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 360
BglII AGATCT 2 cut(s) 559, 1092
BisI GCNGC 3 cut(s) 239, 428, 543
BlsI GCNGC 3 cut(s) 240, 429, 544
Bme1390I CCNGG 3 cut(s) 40, 386, 592
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 3 cut(s) 40, 386, 592
BmsI GCATC 5 cut(s) 73, 190, 384, 969, 1213
BoxI GACNNNNGTC 1 cut(s) 820
BpuEI CTTGAG 1 cut(s) 1172
Bsa29I ATCGAT 1 cut(s) 198
BsaAI YACGTR 2 cut(s) 449, 619
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 39, 543, 844
BsaWI WCCGGW 2 cut(s) 352, 862
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 3 cut(s) 152, 294, 519
Bse3DI GCAATG 1 cut(s) 838
Bse8I GATNNNNATC 1 cut(s) 348
BseAI TCCGGA 2 cut(s) 352, 862
BseBI CCWGG 3 cut(s) 40, 386, 592
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 39, 543, 844
BseGI GGATG 5 cut(s) 361, 418, 796, 840, 1228
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 3 cut(s) 223, 381, 515
BseNI ACTGG 3 cut(s) 152, 294, 519
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 225, 414
Bsh1236I CGCG 2 cut(s) 545, 934
BshFI GGCC 1 cut(s) 1105
BshVI ATCGAT 1 cut(s) 198
BsiSI CCGG 2 cut(s) 353, 863
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 2 cut(s) 430, 972
BsnI GGCC 1 cut(s) 1105
Bsp13I TCCGGA 2 cut(s) 352, 862
Bsp19I CCATGG 1 cut(s) 844
BspACI CCGC 4 cut(s) 269, 543, 545, 569
BspANI GGCC 1 cut(s) 1105
BspCNI CTCAG 3 cut(s) 222, 382, 514
BspDI ATCGAT 1 cut(s) 198
BspEI TCCGGA 2 cut(s) 352, 862
BspFNI CGCG 2 cut(s) 545, 934
BspLI GGNNCC 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 4 cut(s) 100, 555, 854, 1223
BsrDI GCAATG 1 cut(s) 838
BsrI ACTGG 3 cut(s) 152, 294, 519
BssECI CCNNGG 3 cut(s) 39, 543, 844
BssNAI GTATAC 1 cut(s) 810
BssT1I CCWWGG 1 cut(s) 844
Bst1107I GTATAC 1 cut(s) 810
Bst2UI CCWGG 3 cut(s) 40, 386, 592
Bst4CI ACNGT 4 cut(s) 474, 491, 766, 893
Bst6I CTCTTC 1 cut(s) 1094
BstBAI YACGTR 2 cut(s) 449, 619
BstC8I GCNNGC 5 cut(s) 76, 243, 368, 425, 1156
BstDEI CTNAG 5 cut(s) 189, 209, 390, 501, 920
BstDSI CCRYGG 2 cut(s) 543, 844
BstF5I GGATG 5 cut(s) 361, 418, 796, 840, 1228
BstFNI CGCG 2 cut(s) 545, 934
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 372, 386
BstNI CCWGG 3 cut(s) 40, 386, 592
BstNSI RCATGY 2 cut(s) 116, 370
BstPAI GACNNNNGTC 1 cut(s) 820
BstSCI CCNGG 3 cut(s) 38, 384, 590
BstSFI CTRYAG 1 cut(s) 470
BstUI CGCG 2 cut(s) 545, 934
BstV1I GCAGC 2 cut(s) 225, 414
BstX2I RGATCY 4 cut(s) 105, 547, 559, 1092
BstYI RGATCY 4 cut(s) 105, 547, 559, 1092
BstZ17I GTATAC 1 cut(s) 810
Bsu15I ATCGAT 1 cut(s) 198
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 1105
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 2 cut(s) 543, 844
BtsCI GGATG 5 cut(s) 361, 418, 796, 840, 1228
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 3 cut(s) 375, 526, 746
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 5 cut(s) 76, 243, 368, 425, 1156
CaiI CAGNNNCTG 2 cut(s) 86, 216
Cfr42I CCGCGG 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 1 cut(s) 754
DdeI CTNAG 5 cut(s) 189, 209, 390, 501, 920
Eam1104I CTCTTC 1 cut(s) 1094
EarI CTCTTC 1 cut(s) 1094
Eco130I CCWWGG 1 cut(s) 844
Eco57I CTGAAG 1 cut(s) 969
EcoRII CCWGG 3 cut(s) 38, 384, 590
EcoT14I CCWWGG 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 844
FaqI GGGAC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 2 cut(s) 809, 888
Fnu4HI GCNGC 3 cut(s) 239, 428, 543
FokI GGATG 5 cut(s) 368, 425, 803, 827, 1235
Fsp4HI GCNGC 3 cut(s) 239, 428, 543
FspBI CTAG 4 cut(s) 168, 246, 563, 813
GluI GCNGC 3 cut(s) 239, 428, 543
HaeIII GGCC 1 cut(s) 1105
HapII CCGG 2 cut(s) 353, 863
HgaI GACGC 1 cut(s) 754
HinfI GANTC 5 cut(s) 308, 587, 724, 849, 1176
HpaII CCGG 2 cut(s) 353, 863
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 4 cut(s) 498, 744, 810, 889
Hpy188I TCNGA 9 cut(s) 61, 110, 226, 478, 729, 805, 949, 965, 987
Hpy188III TCNNGA 9 cut(s) 30, 353, 599, 663, 863, 1055, 1096, 1166, 1189
Hpy8I GTNNAC 4 cut(s) 498, 744, 810, 889
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 4 cut(s) 131, 908, 1007, 1061
HpyCH4III ACNGT 4 cut(s) 474, 491, 766, 893
HpyCH4IV ACGT 3 cut(s) 418, 448, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 372, 386
HpyF3I CTNAG 5 cut(s) 189, 209, 390, 501, 920
HpySE526I ACGT 3 cut(s) 418, 448, 618
Kpn2I TCCGGA 2 cut(s) 352, 862
Ksp22I TGATCA 1 cut(s) 621
KspI CCGCGG 1 cut(s) 546
Lsp1109I GCAGC 2 cut(s) 225, 414
LweI GCATC 5 cut(s) 73, 190, 384, 969, 1213
MaeI CTAG 4 cut(s) 168, 246, 563, 813
MaeII ACGT 3 cut(s) 418, 448, 618
MaeIII GTNAC 6 cut(s) 212, 449, 461, 631, 693, 926
MboII GAAGA 3 cut(s) 205, 1000, 1111
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 4 cut(s) 105, 547, 559, 1092
MluCI AATT 8 cut(s) 90, 121, 147, 232, 321, 338, 879, 975
MlyI GAGTC 1 cut(s) 858
MmeI TCCRAC 2 cut(s) 133, 456
MroI TCCGGA 2 cut(s) 352, 862
MseI TTAA 2 cut(s) 231, 647
MslI CAYNNNNRTG 4 cut(s) 281, 582, 965, 1064
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 353, 863
MspR9I CCNGG 3 cut(s) 40, 386, 592
MunI CAATTG 1 cut(s) 975
Mva1269I GAATGC 2 cut(s) 430, 972
MvaI CCWGG 3 cut(s) 40, 386, 592
MvnI CGCG 2 cut(s) 545, 934
MwoI GCNNNNNNNGC 2 cut(s) 372, 386
NcoI CCATGG 1 cut(s) 844
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 449, 693
NspI RCATGY 2 cut(s) 116, 370
PaeI GCATGC 1 cut(s) 370
PaqCI CACCTGC 1 cut(s) 496
PciI ACATGT 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 2 cut(s) 430, 972
PfeI GAWTC 4 cut(s) 308, 587, 724, 1176
PkrI GCNGC 3 cut(s) 240, 429, 544
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
Ppu21I YACGTR 2 cut(s) 449, 619
PscI ACATGT 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 820
PsiI TTATAA 1 cut(s) 705
Psp6I CCWGG 3 cut(s) 38, 384, 590
PspGI CCWGG 3 cut(s) 38, 384, 590
PspN4I GGNNCC 1 cut(s) 37
PstNI CAGNNNCTG 2 cut(s) 86, 216
PsuI RGATCY 4 cut(s) 105, 547, 559, 1092
RseI CAYNNNNRTG 4 cut(s) 281, 582, 965, 1064
SacII CCGCGG 1 cut(s) 546
SaqAI TTAA 2 cut(s) 231, 647
SatI GCNGC 3 cut(s) 239, 428, 543
SchI GAGTC 1 cut(s) 858
ScrFI CCNGG 3 cut(s) 40, 386, 592
SfaNI GCATC 5 cut(s) 73, 190, 384, 969, 1213
SfcI CTRYAG 1 cut(s) 470
Sfr303I CCGCGG 1 cut(s) 546
SgrBI CCGCGG 1 cut(s) 546
SmiMI CAYNNNNRTG 4 cut(s) 281, 582, 965, 1064
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
SphI GCATGC 1 cut(s) 370
Sse9I AATT 8 cut(s) 90, 121, 147, 232, 321, 338, 879, 975
SsiI CCGC 4 cut(s) 269, 543, 545, 569
SspMI CTAG 4 cut(s) 168, 246, 563, 813
StyD4I CCNGG 3 cut(s) 38, 384, 590
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 4 cut(s) 474, 491, 766, 893
TaiI ACGT 3 cut(s) 421, 451, 621
TaqI TCGA 4 cut(s) 198, 662, 1037, 1083
TasI AATT 8 cut(s) 90, 121, 147, 232, 321, 338, 879, 975
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 4 cut(s) 308, 587, 724, 1176
Tru1I TTAA 2 cut(s) 231, 647
Tru9I TTAA 2 cut(s) 231, 647
TscAI CASTG 3 cut(s) 382, 526, 746
TseFI GTSAC 2 cut(s) 449, 693
TseI GCWGC 2 cut(s) 238, 427
Tsp45I GTSAC 2 cut(s) 449, 693
TspDTI ATGAA 6 cut(s) 243, 271, 429, 662, 674, 829
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 3 cut(s) 382, 526, 746
XapI RAATTY 3 cut(s) 147, 321, 338
XceI RCATGY 2 cut(s) 116, 370
XmiI GTMKAC 2 cut(s) 809, 888
XspI CTAG 4 cut(s) 168, 246, 563, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.