Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Forward (+)

20600303 .. 20600784

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16732.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAACATGAGGCCGTCCAAATACCCAAGACAATTCAAATTTCAGGGCCAGAATTTAATTTTATCTGTGACCCTTTGTGTACTTCAGAAATGGGGAGAAAGAGGAAAAACAAATCATCAAGAAGTTCCAAAGAAAGAAAGACCAGATCAGAAATGGGAGCAGCAAATCAAGATGCAATAGTCCCCCGCCGCAAGGAGGAAGGTATTGAAATCCCAGTCCCAACCAGAGCCAGAGACTTACCTGAAATTGCTAAAAAGATCGATTCCAAGCTCAGTTCTCGCCTCTCGAAACTTAATTTCCTGCCGGCTACTATTTCATCTGTTGATGAGGCAGTTGCCACTTTCATGAAACTGGTGGCATTGTCCAAAGAATGCCAAGGAGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

130

Amino Acids

14.36

Weight (kDa)

9.44

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	187, 190
AcsI	RAATTY	2 cut(s)	39, 53
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	193, 196
AgsI	TTSAA	2 cut(s)	38, 209
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	228
AoxI	GGCC	2 cut(s)	12, 47
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	39, 53
AspS9I	GGNCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	162, 190
BlsI	GCNGC	2 cut(s)	163, 191
BmgT120I	GGNCC	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 196
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	215, 357
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	193, 196
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	215, 357
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	14, 49
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	2 cut(s)	167, 203
BslI	CCNNNNNNNGG	2 cut(s)	193, 196
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	167, 203
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	14, 49
Bsp143I	GATC	2 cut(s)	146, 258
BspACI	CCGC	2 cut(s)	187, 190
BspANI	GGCC	2 cut(s)	14, 49
BspCNI	CTCAG	1 cut(s)	285
BspDI	ATCGAT	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	215, 357
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	2 cut(s)	146, 258
BssT1I	CCWWGG	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	149, 261
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	146, 258
BstV1I	GCAGC	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	14, 49
BsuTUI	ATCGAT	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	2 cut(s)	8, 346
CviJI	RGCY	5 cut(s)	14, 49, 230, 271, 308
CviKI_1	RGCY	5 cut(s)	14, 49, 230, 271, 308
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	2 cut(s)	148, 260
DpnII	GATC	2 cut(s)	146, 258
Eco130I	CCWWGG	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	2 cut(s)	11, 349
FaiI	YATR	2 cut(s)	9, 347
FaqI	GGGAC	2 cut(s)	167, 203
FatI	CATG	2 cut(s)	7, 345
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	162, 190
Fsp4HI	GCNGC	2 cut(s)	162, 190
GluI	GCNGC	2 cut(s)	162, 190
HaeIII	GGCC	2 cut(s)	14, 49
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	2 cut(s)	11, 349
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	88, 151
Hpy188III	TCNNGA	4 cut(s)	120, 170, 286, 346
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	4, 176
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	11, 349
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	146, 258
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	148, 260
MboI	GATC	2 cut(s)	146, 258
MluCI	AATT	6 cut(s)	33, 39, 53, 58, 246, 295
MnlI	CCTC	5 cut(s)	4, 96, 190, 293, 322
MroNI	GCCGGC	1 cut(s)	304
MseI	TTAA	2 cut(s)	57, 294
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	377
NaeI	GCCGGC	1 cut(s)	306
NdeII	GATC	2 cut(s)	146, 258
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	11, 349
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	377
PdiI	GCCGGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	163, 191
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	57, 294
SatI	GCNGC	2 cut(s)	162, 190
Sau3AI	GATC	2 cut(s)	146, 258
Sau96I	GGNCC	1 cut(s)	47
SetI	ASST	3 cut(s)	205, 244, 273
SfaNI	GCATC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	6 cut(s)	33, 39, 53, 58, 246, 295
SsiI	CCGC	2 cut(s)	187, 190
StyI	CCWWGG	1 cut(s)	376
TaqI	TCGA	2 cut(s)	261, 287
TasI	AATT	6 cut(s)	33, 39, 53, 58, 246, 295
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	57, 294
Tru9I	TTAA	2 cut(s)	57, 294
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	306, 334, 362
XapI	RAATTY	2 cut(s)	39, 53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.