Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Forward (+)

31741819 .. 31742767

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTCAACGAGACGGTGGTTGAAGCTGCGATGCTAGGCAAGGTGCCCAAAGTGGTAGTTGTGGTGTGCTTGTTGAGAGGAAACAAGGTGTTGTTGGGACGGCGCCGCTCATCTCTTGGTGATTCCACATTTTCCCTTCCTGGGGGACACCTCGAGTTTGGTGAGAGCTTTGAGGAGTGTGCAACAAGAGAAGTGAAGGAAGAAACTGGTTTAGACATTGAGAAGTTAGAGTTTCTAACGGTCACAAACAACATGTTCTTGGACAAAGCCGAACCATACCAGTACGTGGTGATTTCTATGCGAGCAGTCTTGGCAGATCATCAACAGCCTCAGAATATTGAACCAGACTTCTGTGATGGTTGGGGTTGGTATGAGTGGGGCAACCTCCCCAAGCCACTCTTTTCGCCCTTGGAAAAAGCAGTTCAGGCTGGATTTAATCCTTTCCCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019904 GO:0022607 GO:0030674 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051291 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0060090 GO:0065002 GO:0065003 GO:0070206 GO:0070208 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:0097718

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 Chromo

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

4.85

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	18 - 133	6.5e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 102
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	141, 142, 286
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	23, 341
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	26, 168
AluI	AGCT	2 cut(s)	26, 168
Alw26I	GTCTC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	131, 173, 301
AvaI	CYCGRG	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	43, 102
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	27, 106
BlsI	GCNGC	2 cut(s)	28, 107
Bme1390I	CCNGG	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	45, 104
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	140, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 142, 286
Bse1I	ACTGG	2 cut(s)	211, 280
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	140, 408
BseLI	CCNNNNNNNGG	3 cut(s)	141, 142, 286
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	211, 280
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	13
BshNI	GGYRCC	2 cut(s)	43, 102
BsiHKCI	CYCGRG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	111, 159
BslI	CCNNNNNNNGG	3 cut(s)	141, 142, 286
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	111, 159
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	45, 104
BspT107I	GGYRCC	2 cut(s)	43, 102
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	211, 280
BssECI	CCNNGG	2 cut(s)	140, 408
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	16, 241
BstACI	GRCGYC	1 cut(s)	103
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 425
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	26, 168, 269, 328, 394, 428
CviKI_1	RGCY	6 cut(s)	26, 168, 269, 328, 394, 428
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	330
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	256
FaiI	YATR	4 cut(s)	254, 277, 299, 372
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	2 cut(s)	111, 159
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	27, 106
Fsp4HI	GCNGC	2 cut(s)	27, 106
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	27, 106
HaeII	RGCGCY	1 cut(s)	106
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	3 cut(s)	131, 173, 301
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	146, 190
HpyCH4III	ACNGT	2 cut(s)	16, 241
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 425
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	103
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	126, 153, 192, 293, 357, 410, 414
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	103
MnlI	CCTC	5 cut(s)	71, 161, 166, 339, 395
MseI	TTAA	2 cut(s)	435, 451
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	311, 425
NarI	GGCGCC	1 cut(s)	103
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	45, 104
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	256
PaeR7I	CTCGAG	1 cut(s)	152
PciI	ACATGT	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	28, 107
PluTI	GGCGCC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	286
PscI	ACATGT	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	45, 104
PspXI	VCTCGAGB	1 cut(s)	152
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	435, 451
SatI	GCNGC	2 cut(s)	27, 106
Sau3AI	GATC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	28, 45, 90, 153, 170, 288, 387
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	1 cut(s)	106
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	16, 241
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	153
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	435, 451
Tru9I	TTAA	2 cut(s)	435, 451
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	286
XceI	RCATGY	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.