Rh7CG487100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009680
Physical Location & Seq
Forward (+)
65477345 .. 65478478
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG487100.1

Sequence Viewer

Length: 1134 bp
ATGAGAGAACCAAACCAAGATGATTGTTCCGGCCGCAAAATTGGACCAATCATCGATGTTTGCAAGGAGGAAGGAATTAAAATTCCAGTACCAACCAGAACTAGGGACTTCCCAGAGATTAGTAAGAAGATCAATGATAAGCTTACTTATAGCCTGTTGGAACATCATTTGCTGCCTGCTCGTATATCAACTGTTGACGAGGCCTTCGCCACTTTCATGCAAATTATGACGCTGACCAAAGAATCGCTCAGAAAAACTCTTGTGAGAGGGGAATTTGATGAGTTCCTAGATGATGAGATGCATGGCACTGGAAAGCTGGCTGACATGCTCAAGCAGTTCTCGGATGAGCTTGACCAATTTCATCACGATTATGGTCTTCGTGACCTCAAAAATAACTTCTTAGAGACCGAGATCAACTATATCCTTAATACTCGGGATGCTGTCAAACAAGATCATGTAGATGATGCAGGGAAGAACAAAGAGGAGCAATGCAGCCTTATGAACACGAGGTTTGTGAACATGGTCTGGACTTACATCGAGCAAGTGATGTTGGATGTGTTAATGAAACAAATAGGGAGATATACTCATCTTCATTTGGAGGTCAGCTCTCTTTCCTATATTCTTTTAGGCAGAATGAGGCACATGACGCAGCAGTGGATAAATGAGAGTATGGAAATGAAGGAAACGTTAGTGAAAGATAGGGGTTATAGGCCGGATTTTTTGTCTGAGCATAATAGTCTCATATCTAAATGCAGGGAATTCATATATGGAGTTCTTGATAATAAGAAAAAGCCCTCTACAATAGTTGTGGAGGGCATTGGGGAGATTGAAGTTGAGGGTCTGAGGAAGTACCCACGAGATGTATTATCCCGAGCCTTTCGTGTCAAAATGAATGAGATTGCACATTGGAAAATGTTCGCAAGAATATTTGTTGAACGTTTGGCTTCACATTTGAAGTTTAGTGTTGCAAACCTTGTGGACACATACATGGATGTGGAGATGTCTAATATGCAGATGTTGAAGGGGCCAGAATATGGTTTCGGATTAAAGGAGATGCTGGAGAAATATCCTTTGGCGCGCAAGGATCTTCAAAAAAGAAATCGAAATGCTCAAGAAAGCCAAGGAGATTTGTGA

Protein Analysis

377

Amino Acids

44.14

Weight (kDa)

6.22

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 37 - 246 2.2e-11 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1034
AccII CGCG 1 cut(s) 1078
AciI CCGC 1 cut(s) 34
AclI AACGTT 2 cut(s) 686, 937
AclWI GGATC 1 cut(s) 1092
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 3 cut(s) 81, 272, 758
AfaI GTAC 2 cut(s) 90, 851
AfiI CCNNNNNNNGG 2 cut(s) 102, 1034
AgsI TTSAA 5 cut(s) 830, 935, 955, 1021, 1091
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AluBI AGCT 4 cut(s) 142, 316, 349, 606
AluI AGCT 4 cut(s) 142, 316, 349, 606
Alw26I GTCTC 2 cut(s) 398, 743
AlwI GGATC 1 cut(s) 1092
Ama87I CYCGRG 2 cut(s) 432, 870
AoxI GGCC 4 cut(s) 31, 201, 710, 1025
ApeKI GCWGC 3 cut(s) 172, 492, 649
ApoI RAATTY 3 cut(s) 81, 272, 758
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 914
AspLEI GCGC 2 cut(s) 1078, 1080
AspS9I GGNCC 2 cut(s) 44, 1025
AvaI CYCGRG 2 cut(s) 432, 870
AvaII GGWCC 1 cut(s) 44
BauI CACGAG 2 cut(s) 505, 855
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 3 cut(s) 159, 504, 661
BcoDI GTCTC 2 cut(s) 398, 743
BfaI CTAG 2 cut(s) 102, 287
BisI GCNGC 4 cut(s) 34, 173, 493, 650
BlsI GCNGC 4 cut(s) 35, 174, 494, 651
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 432, 870
BmgT120I GGNCC 2 cut(s) 44, 1025
BmiI GGNNCC 1 cut(s) 1026
BmsI GCATC 4 cut(s) 288, 427, 454, 1044
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 4 cut(s) 568, 600, 590, 622
BpmI CTGGAG 1 cut(s) 1079
BpuEI CTTGAG 2 cut(s) 314, 1095
Bsa29I ATCGAT 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 1034
Bse1I ACTGG 2 cut(s) 86, 313
Bse3DI GCAATG 1 cut(s) 494
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 1120
BseGI GGATG 4 cut(s) 349, 442, 559, 997
BseLI CCNNNNNNNGG 2 cut(s) 102, 1034
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 3 cut(s) 262, 717, 833
BseNI ACTGG 2 cut(s) 86, 313
BsePI GCGCGC 1 cut(s) 1076
BseRI GAGGAG 1 cut(s) 497
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 3 cut(s) 159, 504, 661
Bsh1236I CGCG 1 cut(s) 1078
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 4 cut(s) 33, 203, 712, 1027
BshVI ATCGAT 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 34
BsiHKCI CYCGRG 2 cut(s) 432, 870
BsiSI CCGG 2 cut(s) 30, 713
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 102, 1034
BsmAI GTCTC 2 cut(s) 398, 743
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 4 cut(s) 33, 203, 712, 1027
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 2 cut(s) 432, 870
Bsp143I GATC 4 cut(s) 129, 411, 451, 1084
BspACI CCGC 1 cut(s) 34
BspANI GGCC 4 cut(s) 33, 203, 712, 1027
BspCNI CTCAG 3 cut(s) 261, 718, 834
BspDI ATCGAT 1 cut(s) 54
BspFNI CGCG 1 cut(s) 1078
BspLI GGNNCC 1 cut(s) 1026
BspPI GGATC 1 cut(s) 1092
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 494
BsrI ACTGG 2 cut(s) 86, 313
BssECI CCNNGG 1 cut(s) 1120
BssHII GCGCGC 1 cut(s) 1076
BssMI GATC 4 cut(s) 129, 411, 451, 1084
BssSI CACGAG 2 cut(s) 505, 855
BssT1I CCWWGG 1 cut(s) 1120
Bst2BI CACGAG 2 cut(s) 505, 855
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 3 cut(s) 177, 318, 1078
BstDEI CTNAG 4 cut(s) 248, 400, 726, 842
BstF5I GGATG 4 cut(s) 349, 442, 559, 997
BstFNI CGCG 1 cut(s) 1078
BstHHI GCGC 2 cut(s) 1078, 1080
BstKTI GATC 4 cut(s) 132, 414, 454, 1087
BstMAI GTCTC 2 cut(s) 398, 743
BstMBI GATC 4 cut(s) 129, 411, 451, 1084
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 328
BstUI CGCG 1 cut(s) 1078
BstV1I GCAGC 3 cut(s) 159, 504, 661
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BstZI CGGCCG 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 4 cut(s) 33, 203, 712, 1027
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 4 cut(s) 349, 442, 559, 997
BtsI GCAGTG 1 cut(s) 659
BtsIMutI CAGTG 2 cut(s) 306, 659
Cac8I GCNNGC 3 cut(s) 177, 318, 1078
CfoI GCGC 2 cut(s) 1078, 1080
Cfr13I GGNCC 2 cut(s) 44, 1025
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 2 cut(s) 238, 655
Csp6I GTAC 2 cut(s) 89, 850
CspCI CAANNNNNGTGG 4 cut(s) 789, 824, 957, 992
CviAII CATG 7 cut(s) 217, 302, 325, 455, 520, 643, 988
CviQI GTAC 2 cut(s) 89, 850
DdeI CTNAG 4 cut(s) 248, 400, 726, 842
DpnI GATC 4 cut(s) 131, 413, 453, 1086
DpnII GATC 4 cut(s) 129, 411, 451, 1084
EaeI YGGCCR 1 cut(s) 31
EagI CGGCCG 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 1120
Eco147I AGGCCT 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 44
Eco52I CGGCCG 1 cut(s) 31
Eco88I CYCGRG 2 cut(s) 432, 870
EcoRI GAATTC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 1120
EcoT22I ATGCAT 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 1120
FaeI CATG 7 cut(s) 220, 305, 328, 458, 523, 646, 991
FaqI GGGAC 1 cut(s) 119
FatI CATG 7 cut(s) 216, 301, 324, 454, 519, 642, 987
Fnu4HI GCNGC 4 cut(s) 34, 173, 493, 650
FokI GGATG 4 cut(s) 356, 449, 566, 1004
Fsp4HI GCNGC 4 cut(s) 34, 173, 493, 650
FspBI CTAG 2 cut(s) 102, 287
GlaI GCGC 2 cut(s) 1077, 1079
GluI GCNGC 4 cut(s) 34, 173, 493, 650
GsuI CTGGAG 1 cut(s) 1079
HaeIII GGCC 4 cut(s) 33, 203, 712, 1027
HapII CCGG 2 cut(s) 30, 713
HgaI GACGC 2 cut(s) 238, 655
HhaI GCGC 2 cut(s) 1078, 1080
Hin1II CATG 7 cut(s) 220, 305, 328, 458, 523, 646, 991
Hin6I GCGC 2 cut(s) 1076, 1078
HinP1I GCGC 2 cut(s) 1076, 1078
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 30, 713
Hpy166II GTNNAC 3 cut(s) 196, 517, 979
Hpy188I TCNGA 5 cut(s) 251, 343, 727, 843, 1043
Hpy188III TCNNGA 7 cut(s) 365, 380, 434, 526, 776, 870, 1112
Hpy8I GTNNAC 3 cut(s) 196, 517, 979
HpyAV CCTTC 4 cut(s) 65, 214, 673, 1015
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 2 cut(s) 686, 937
HpyCH4V TGCA 9 cut(s) 63, 220, 301, 467, 492, 753, 902, 968, 1012
HpyF10VI GCNNNNNNNGC 1 cut(s) 646
HpyF3I CTNAG 4 cut(s) 248, 400, 726, 842
HpySE526I ACGT 2 cut(s) 686, 937
Hsp92II CATG 7 cut(s) 220, 305, 328, 458, 523, 646, 991
HspAI GCGC 2 cut(s) 1076, 1078
Kzo9I GATC 4 cut(s) 129, 411, 451, 1084
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 3 cut(s) 159, 504, 661
LweI GCATC 4 cut(s) 288, 427, 454, 1044
MaeI CTAG 2 cut(s) 102, 287
MaeII ACGT 2 cut(s) 686, 937
MaeIII GTNAC 1 cut(s) 380
MalI GATC 4 cut(s) 131, 413, 453, 1086
MboI GATC 4 cut(s) 129, 411, 451, 1084
MboII GAAGA 5 cut(s) 139, 368, 484, 581, 1079
MflI RGATCY 1 cut(s) 1084
MluCI AATT 7 cut(s) 39, 75, 81, 222, 272, 356, 758
MmeI TCCRAC 2 cut(s) 138, 531
Mph1103I ATGCAT 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 914
MseI TTAA 4 cut(s) 78, 426, 560, 1046
MslI CAYNNNNRTG 5 cut(s) 215, 369, 459, 986, 992
MspI CCGG 2 cut(s) 30, 713
MvnI CGCG 1 cut(s) 1078
MwoI GCNNNNNNNGC 1 cut(s) 646
NdeII GATC 4 cut(s) 129, 411, 451, 1084
NlaIII CATG 7 cut(s) 220, 305, 328, 458, 523, 646, 991
NlaIV GGNNCC 1 cut(s) 1026
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 1 cut(s) 328
PauI GCGCGC 1 cut(s) 1076
PceI AGGCCT 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 1034
PkrI GCNGC 4 cut(s) 35, 174, 494, 651
Psp1406I AACGTT 2 cut(s) 686, 937
PspN4I GGNNCC 1 cut(s) 1026
PspPI GGNCC 2 cut(s) 44, 1025
PsuI RGATCY 1 cut(s) 1084
PteI GCGCGC 1 cut(s) 1076
RsaI GTAC 2 cut(s) 90, 851
RsaNI GTAC 2 cut(s) 89, 850
RseI CAYNNNNRTG 5 cut(s) 215, 369, 459, 986, 992
SaqAI TTAA 4 cut(s) 78, 426, 560, 1046
SatI GCNGC 4 cut(s) 34, 173, 493, 650
Sau3AI GATC 4 cut(s) 129, 411, 451, 1084
Sau96I GGNCC 2 cut(s) 44, 1025
SfaNI GCATC 4 cut(s) 288, 427, 454, 1044
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 5 cut(s) 215, 369, 459, 986, 992
SmlI CTYRAG 2 cut(s) 329, 1110
SmoI CTYRAG 2 cut(s) 329, 1110
Sse9I AATT 7 cut(s) 39, 75, 81, 222, 272, 356, 758
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 927
SspMI CTAG 2 cut(s) 102, 287
StuI AGGCCT 1 cut(s) 203
StyI CCWWGG 1 cut(s) 1120
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 2 cut(s) 689, 940
TaqI TCGA 3 cut(s) 54, 537, 1102
TaqII GACCGA 1 cut(s) 422
TasI AATT 7 cut(s) 39, 75, 81, 222, 272, 356, 758
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 4 cut(s) 78, 426, 560, 1046
Tru9I TTAA 4 cut(s) 78, 426, 560, 1046
TscAI CASTG 2 cut(s) 313, 659
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 3 cut(s) 172, 492, 649
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 8 cut(s) 205, 350, 515, 578, 581, 692, 751, 905
TspRI CASTG 2 cut(s) 313, 659
Van91I CCANNNNNTGG 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 81, 272, 758
XceI RCATGY 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 2 cut(s) 102, 287
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.