Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001767.1

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Reverse (-)

14339 .. 15577

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001767.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggggagaaagagaaaaaacaaatcatcaagaggttccaaagaaagaaagaccagatcagaagtgggagtagcaaaccaagatgctgtagttcctcgccgcaagatccgacatgtcatcaattcttgcaaggaagaagggattgaaatgccagtcccaaccagagctagagacttgccagagattgctaagaagatcgatgccaagctcagttactgcctctcggaacttaatttgctgcctgctagtatttcatcggttgatgaggcggttgccactttcatgcaactggtggcattgtccaaagaatctctcataaaaattcttgtgagaggagaatttgatgagtatcctgatgacaagagcatgcacggcactgcaaacctggctgagatgctcaatcagttcaaggatgaacgtggctggctgcattccagctttttccgacgtgacctcaaaagtaacttcctacagtcggagatcaactactgtatgtttactcagcaggtgggaaaagccagtggtcttgcagagaaacttgccgcggatcttacagcagatctagtcgcggtggaacatcaccatgattcctggtttctggatatgttctggtattacgtgatcatgcaagtaactcgttctgtgttaatgacttatctatcgagatatgttcatttttgttttcatgttgtgtcacttgtttataatctaatggacaagatgattcagaggtcgtatcaatggacgcatgagaactattataccgtgaatgtgaatgaggaaaaaacggatgagtttttttccgagtatactagacttatgtccaaatgcaatgtattcatccatggagtccttgatgatccggaaaagccctctacaattattgtagacggtattggggagattgtggttgaaggtcttaggagttactcgcgtgatctactatctgaagcctttagcgtcagaatgcaatcaattgcatctcggaagatacatatagtaacttttattgaaggtatggcttctcatttgcagtcgagtgttgcaaaccttctggacacatacatggatttggagatgttcgatatgcagatcttgaagaggccacattttgctcatgtatttgaggatatggttgagaactatcccttggcacgcaagggtcttgaaaagagaatcaatatgctcaagaaagctaaggagatttgtgaggggatcatggatacttatgatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Dynamin_N

Protein Analysis

412

Amino Acids

47.66

Weight (kDa)

6.3

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
AccI	GTMKAC	2 cut(s)	809, 888
AccII	CGCG	3 cut(s)	545, 569, 934
AccIII	TCCGGA	1 cut(s)	862
AciI	CCGC	5 cut(s)	100, 269, 543, 545, 569
AclWI	GGATC	4 cut(s)	100, 555, 854, 1223
AcsI	RAATTY	2 cut(s)	321, 338
AcuI	CTGAAG	1 cut(s)	969
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	146, 409, 914, 1013, 1099, 1169
AjiI	CACGTC	1 cut(s)	449
AjnI	CCWGG	2 cut(s)	384, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	1133, 1165
AluBI	AGCT	4 cut(s)	167, 208, 438, 1196
AluI	AGCT	4 cut(s)	167, 208, 438, 1196
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	100, 555, 854, 1223
AlwNI	CAGNNNCTG	1 cut(s)	216
Aor13HI	TCCGGA	1 cut(s)	862
AoxI	GGCC	1 cut(s)	1103
ApeKI	GCWGC	2 cut(s)	238, 427
ApoI	RAATTY	2 cut(s)	321, 338
AsuHPI	GGTGA	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	225, 414
BceAI	ACGGC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	386, 592
BciVI	GTATCC	2 cut(s)	360, 1216
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	4 cut(s)	168, 246, 563, 813
BfmI	CTRYAG	2 cut(s)	87, 470
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	2 cut(s)	360, 1216
BglII	AGATCT	2 cut(s)	559, 1092
BisI	GCNGC	4 cut(s)	100, 239, 428, 543
BlsI	GCNGC	4 cut(s)	101, 240, 429, 544
Bme1390I	CCNGG	2 cut(s)	386, 592
BmgBI	CACGTC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	386, 592
BmsI	GCATC	4 cut(s)	73, 190, 384, 989
BoxI	GACNNNNGTC	1 cut(s)	820
Bpu10I	CCTNAGC	1 cut(s)	1197
BpuEI	CTTGAG	1 cut(s)	1172
Bsa29I	ATCGAT	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	543, 844, 1149
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	3 cut(s)	152, 294, 519
Bse3DI	GCAATG	1 cut(s)	838
Bse8I	GATNNNNATC	1 cut(s)	348
BseAI	TCCGGA	1 cut(s)	862
BseBI	CCWGG	2 cut(s)	386, 592
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	3 cut(s)	543, 844, 1149
BseGI	GGATG	3 cut(s)	418, 796, 840
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	3 cut(s)	223, 381, 515
BseNI	ACTGG	3 cut(s)	152, 294, 519
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	225, 414
Bsh1236I	CGCG	3 cut(s)	545, 569, 934
BshFI	GGCC	1 cut(s)	1105
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	863
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	2 cut(s)	430, 972
BsnI	GGCC	1 cut(s)	1105
Bsp13I	TCCGGA	1 cut(s)	862
Bsp19I	CCATGG	1 cut(s)	844
BspACI	CCGC	5 cut(s)	100, 269, 543, 545, 569
BspANI	GGCC	1 cut(s)	1105
BspCNI	CTCAG	3 cut(s)	222, 382, 514
BspDI	ATCGAT	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	862
BspFNI	CGCG	3 cut(s)	545, 569, 934
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	4 cut(s)	100, 555, 854, 1223
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	3 cut(s)	152, 294, 519
BssECI	CCNNGG	3 cut(s)	543, 844, 1149
BssNAI	GTATAC	1 cut(s)	810
BssT1I	CCWWGG	2 cut(s)	844, 1149
Bst1107I	GTATAC	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	386, 592
Bst4CI	ACNGT	4 cut(s)	474, 491, 766, 893
Bst6I	CTCTTC	1 cut(s)	1094
BstBAI	YACGTR	1 cut(s)	619
BstC8I	GCNNGC	4 cut(s)	243, 368, 425, 1156
BstDEI	CTNAG	6 cut(s)	189, 209, 390, 501, 920, 1197
BstDSI	CCRYGG	2 cut(s)	543, 844
BstF5I	GGATG	3 cut(s)	418, 796, 840
BstFNI	CGCG	3 cut(s)	545, 569, 934
BstMAI	GTCTC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 386
BstNI	CCWGG	2 cut(s)	386, 592
BstNSI	RCATGY	2 cut(s)	116, 370
BstPAI	GACNNNNGTC	1 cut(s)	820
BstSCI	CCNGG	2 cut(s)	384, 590
BstSFI	CTRYAG	2 cut(s)	87, 470
BstUI	CGCG	3 cut(s)	545, 569, 934
BstV1I	GCAGC	2 cut(s)	225, 414
BstX2I	RGATCY	4 cut(s)	105, 547, 559, 1092
BstYI	RGATCY	4 cut(s)	105, 547, 559, 1092
BstZ17I	GTATAC	1 cut(s)	810
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	2 cut(s)	360, 1216
BsuRI	GGCC	1 cut(s)	1105
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	2 cut(s)	543, 844
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	418, 796, 840
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 526
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	4 cut(s)	243, 368, 425, 1156
CaiI	CAGNNNCTG	1 cut(s)	216
Cfr42I	CCGCGG	1 cut(s)	546
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	2 cut(s)	754, 949
DdeI	CTNAG	6 cut(s)	189, 209, 390, 501, 920, 1197
Eam1104I	CTCTTC	1 cut(s)	1094
EarI	CTCTTC	1 cut(s)	1094
Eco130I	CCWWGG	2 cut(s)	844, 1149
Eco57I	CTGAAG	1 cut(s)	969
EcoRII	CCWGG	2 cut(s)	384, 590
EcoT14I	CCWWGG	2 cut(s)	844, 1149
ErhI	CCWWGG	2 cut(s)	844, 1149
FaqI	GGGAC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	2 cut(s)	809, 888
Fnu4HI	GCNGC	4 cut(s)	100, 239, 428, 543
FokI	GGATG	3 cut(s)	425, 803, 827
Fsp4HI	GCNGC	4 cut(s)	100, 239, 428, 543
FspBI	CTAG	4 cut(s)	168, 246, 563, 813
GluI	GCNGC	4 cut(s)	100, 239, 428, 543
HaeIII	GGCC	1 cut(s)	1105
HapII	CCGG	1 cut(s)	863
HgaI	GACGC	2 cut(s)	754, 949
HinfI	GANTC	5 cut(s)	308, 587, 724, 849, 1176
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	3 cut(s)	498, 810, 889
Hpy188III	TCNNGA	9 cut(s)	30, 353, 599, 663, 863, 1055, 1096, 1166, 1189
Hpy8I	GTNNAC	3 cut(s)	498, 810, 889
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	4 cut(s)	131, 908, 1007, 1061
HpyCH4III	ACNGT	4 cut(s)	474, 491, 766, 893
HpyCH4IV	ACGT	3 cut(s)	418, 448, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 386
HpyF3I	CTNAG	6 cut(s)	189, 209, 390, 501, 920, 1197
HpySE526I	ACGT	3 cut(s)	418, 448, 618
Kpn2I	TCCGGA	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	621
KspI	CCGCGG	1 cut(s)	546
Lsp1109I	GCAGC	2 cut(s)	225, 414
LweI	GCATC	4 cut(s)	73, 190, 384, 989
MaeI	CTAG	4 cut(s)	168, 246, 563, 813
MaeII	ACGT	3 cut(s)	418, 448, 618
MaeIII	GTNAC	7 cut(s)	212, 449, 461, 631, 693, 926, 1000
MboII	GAAGA	4 cut(s)	146, 205, 1000, 1111
MfeI	CAATTG	1 cut(s)	975
MflI	RGATCY	4 cut(s)	105, 547, 559, 1092
MluCI	AATT	6 cut(s)	121, 232, 321, 338, 879, 975
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	3 cut(s)	133, 456, 469
MroI	TCCGGA	1 cut(s)	862
MseI	TTAA	2 cut(s)	231, 647
MslI	CAYNNNNRTG	3 cut(s)	281, 582, 1064
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	2 cut(s)	386, 592
MunI	CAATTG	1 cut(s)	975
Mva1269I	GAATGC	2 cut(s)	430, 972
MvaI	CCWGG	2 cut(s)	386, 592
MvnI	CGCG	3 cut(s)	545, 569, 934
MwoI	GCNNNNNNNGC	2 cut(s)	372, 386
NcoI	CCATGG	1 cut(s)	844
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	449, 693
NspI	RCATGY	2 cut(s)	116, 370
PaeI	GCATGC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	496
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	2 cut(s)	430, 972
PfeI	GAWTC	4 cut(s)	308, 587, 724, 1176
PkrI	GCNGC	4 cut(s)	101, 240, 429, 544
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Ppu21I	YACGTR	1 cut(s)	619
PscI	ACATGT	1 cut(s)	112
PshAI	GACNNNNGTC	1 cut(s)	820
PsiI	TTATAA	1 cut(s)	705
Psp6I	CCWGG	2 cut(s)	384, 590
PspGI	CCWGG	2 cut(s)	384, 590
PspN4I	GGNNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	4 cut(s)	105, 547, 559, 1092
RseI	CAYNNNNRTG	3 cut(s)	281, 582, 1064
SacII	CCGCGG	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	231, 647
SatI	GCNGC	4 cut(s)	100, 239, 428, 543
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	2 cut(s)	386, 592
SfaNI	GCATC	4 cut(s)	73, 190, 384, 989
SfcI	CTRYAG	2 cut(s)	87, 470
Sfr303I	CCGCGG	1 cut(s)	546
SgrBI	CCGCGG	1 cut(s)	546
SmiMI	CAYNNNNRTG	3 cut(s)	281, 582, 1064
SmlI	CTYRAG	1 cut(s)	1187
SmoI	CTYRAG	1 cut(s)	1187
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	6 cut(s)	121, 232, 321, 338, 879, 975
SsiI	CCGC	5 cut(s)	100, 269, 543, 545, 569
SspMI	CTAG	4 cut(s)	168, 246, 563, 813
StyD4I	CCNGG	2 cut(s)	384, 590
StyI	CCWWGG	2 cut(s)	844, 1149
TaaI	ACNGT	4 cut(s)	474, 491, 766, 893
TaiI	ACGT	3 cut(s)	421, 451, 621
TaqI	TCGA	4 cut(s)	198, 662, 1037, 1083
TasI	AATT	6 cut(s)	121, 232, 321, 338, 879, 975
TauI	GCSGC	2 cut(s)	102, 545
TfiI	GAWTC	4 cut(s)	308, 587, 724, 1176
Tru1I	TTAA	2 cut(s)	231, 647
Tru9I	TTAA	2 cut(s)	231, 647
TscAI	CASTG	2 cut(s)	382, 526
TseFI	GTSAC	2 cut(s)	449, 693
TseI	GCWGC	2 cut(s)	238, 427
Tsp45I	GTSAC	2 cut(s)	449, 693
TspDTI	ATGAA	6 cut(s)	243, 271, 429, 662, 674, 829
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	382, 526
XapI	RAATTY	2 cut(s)	321, 338
XceI	RCATGY	2 cut(s)	116, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	2 cut(s)	809, 888
XspI	CTAG	4 cut(s)	168, 246, 563, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.