Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Forward (+)

68472289 .. 68473460

Gene Structure 1172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGAGAACCAAACCAAGATGCAGTAGTTTCCGGCCGCAAAATTGGACCAATCATCGATGTTTGCAAGGAGGAAGGAATTAAAATTCCAGTCCCAACCAGAACTAGGGACTTCCCAGAGATTAGTAAGAAGATCAATGATAAGCTTACATATAGCCTGTTGGAACTTCATTTGCTGCCTATTCGTATTTCAACTGTTGACGAGGCCTTCGCCACTTTCATGCAAATTATGACGCTGACCAAAGAAACGCTCAGAAAAATTCTTGTGAGAGGAGAATTTGATGAGTTCCTAGATGATGAGATGCATGGCACTGGAAAGCTGGCTGAGATGCTCAAGCAGTTCTCGGATGAGCTTGACCAATTTCATCACGAGTATGGTCTTCGTGACCTCAAAAATAACTTCTTAGAGACCAAGATCAACTATATCCTTAATACTCGGGATGCTGTCAAACAAGATCATGTAGATGATGCAGGGAAGAACAAAGAGGAGCAATGCAGCCTTATGAACACGAGGTTTGTGAACATGGTCTGGACTTACATCGAGCAAGTGATGTTGGATGTGTTAATGAAACAAATAGGGAGATATACTCATCTTCATTTGGAGGTCAGCTCTCTTTCCTATATTCTTTTAGGCAGAATGAGGCACATGACGCAGCAGGAATTCATATATGGAGTTCTTGATGATATGAAAAAACCCTCCACAATAGTTGTGGAGGGCATTGGGGAGATTGAAGTACTTGAGGGTCTGAGGAAGTACTCACGAGATGTATTATCCCGAGCCTTTTGTGTCAAAATGAATGAGATTGCACATTGGAAAATGTTCGCAAGAATATTTGTTGAACGTTTGGCTTCACATTTGAAGTTAAGTGTTGCAAACCTTGTGGACACATACATGGATGTGGAGATGTCTGATATGCAGATGTTGAAGGGGCCAGAATATGGTTTCGGATTAAAGGAGATGCTGGAGAAATATCCTTTGGCGCGCAAGGATCTTCAAAAAAGAATCGAAATGCTCAAGAAAGCCAAGGACATTTGTGATGGCATCCATCATGGGTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

353

Amino Acids

41.12

Weight (kDa)

6.21

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	38 - 215	2.3e-08	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccII	CGCG	1 cut(s)	982
AciI	CCGC	1 cut(s)	37
AclI	AACGTT	1 cut(s)	841
AclWI	GGATC	1 cut(s)	996
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	4 cut(s)	84, 258, 275, 659
AfaI	GTAC	2 cut(s)	735, 755
AfiI	CCNNNNNNNGG	2 cut(s)	105, 938
AgsI	TTSAA	6 cut(s)	192, 731, 839, 859, 925, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	4 cut(s)	145, 319, 352, 609
AluI	AGCT	4 cut(s)	145, 319, 352, 609
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	996
Ama87I	CYCGRG	2 cut(s)	435, 774
AoxI	GGCC	3 cut(s)	34, 204, 929
ApeKI	GCWGC	3 cut(s)	175, 495, 652
ApoI	RAATTY	4 cut(s)	84, 258, 275, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	818
AspLEI	GCGC	2 cut(s)	982, 984
AspS9I	GGNCC	2 cut(s)	47, 929
AvaI	CYCGRG	2 cut(s)	435, 774
AvaII	GGWCC	1 cut(s)	47
BauI	CACGAG	3 cut(s)	368, 508, 759
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	162, 507, 664
BccI	CCATC	2 cut(s)	1031, 1053
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	2 cut(s)	105, 290
BisI	GCNGC	4 cut(s)	37, 176, 496, 653
BlsI	GCNGC	4 cut(s)	38, 177, 497, 654
BmcAI	AGTACT	2 cut(s)	735, 755
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	435, 774
BmgT120I	GGNCC	2 cut(s)	47, 929
BmiI	GGNNCC	1 cut(s)	930
BmsI	GCATC	7 cut(s)	10, 291, 318, 430, 457, 948, 1050
BpiI	GAAGAC	1 cut(s)	371
BplI	GAGNNNNNCTC	4 cut(s)	571, 603, 593, 625
BpmI	CTGGAG	1 cut(s)	983
BpuEI	CTTGAG	3 cut(s)	317, 758, 998
Bsa29I	ATCGAT	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	1023
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 938
Bse1I	ACTGG	2 cut(s)	89, 316
Bse3DI	GCAATG	1 cut(s)	497
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	1023
BseGI	GGATG	5 cut(s)	352, 445, 562, 901, 1041
BseLI	CCNNNNNNNGG	2 cut(s)	105, 938
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	3 cut(s)	265, 315, 737
BseNI	ACTGG	2 cut(s)	89, 316
BsePI	GCGCGC	1 cut(s)	980
BseRI	GAGGAG	2 cut(s)	285, 500
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	162, 507, 664
Bsh1236I	CGCG	1 cut(s)	982
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	36, 206, 931
BshVI	ATCGAT	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	37
BsiHKCI	CYCGRG	2 cut(s)	435, 774
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	77, 122
BslI	CCNNNNNNNGG	2 cut(s)	105, 938
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	77, 122
BsnI	GGCC	3 cut(s)	36, 206, 931
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	2 cut(s)	435, 774
Bsp143I	GATC	4 cut(s)	132, 414, 454, 988
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	3 cut(s)	36, 206, 931
BspCNI	CTCAG	3 cut(s)	264, 316, 738
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	982
BspLI	GGNNCC	1 cut(s)	930
BspPI	GGATC	1 cut(s)	996
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	89, 316
BssECI	CCNNGG	1 cut(s)	1023
BssHII	GCGCGC	1 cut(s)	980
BssMI	GATC	4 cut(s)	132, 414, 454, 988
BssSI	CACGAG	3 cut(s)	368, 508, 759
BssT1I	CCWWGG	1 cut(s)	1023
Bst2BI	CACGAG	3 cut(s)	368, 508, 759
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	321, 982
BstDEI	CTNAG	4 cut(s)	251, 324, 403, 746
BstF5I	GGATG	5 cut(s)	352, 445, 562, 901, 1041
BstFNI	CGCG	1 cut(s)	982
BstHHI	GCGC	2 cut(s)	982, 984
BstKTI	GATC	4 cut(s)	135, 417, 457, 991
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	4 cut(s)	132, 414, 454, 988
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	649
BstUI	CGCG	1 cut(s)	982
BstV1I	GCAGC	3 cut(s)	162, 507, 664
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
BstZI	CGGCCG	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	36, 206, 931
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	5 cut(s)	352, 445, 562, 901, 1041
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	321, 982
CfoI	GCGC	2 cut(s)	982, 984
Cfr13I	GGNCC	2 cut(s)	47, 929
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	2 cut(s)	241, 658
Csp6I	GTAC	2 cut(s)	734, 754
CspCI	CAANNNNNGTGG	6 cut(s)	688, 690, 723, 725, 861, 896
CviAII	CATG	7 cut(s)	220, 305, 458, 523, 646, 892, 1049
CviQI	GTAC	2 cut(s)	734, 754
DdeI	CTNAG	4 cut(s)	251, 324, 403, 746
DpnI	GATC	4 cut(s)	134, 416, 456, 990
DpnII	GATC	4 cut(s)	132, 414, 454, 988
EaeI	YGGCCR	1 cut(s)	34
EagI	CGGCCG	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	1023
Eco147I	AGGCCT	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	34
Eco88I	CYCGRG	2 cut(s)	435, 774
EcoRI	GAATTC	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT22I	ATGCAT	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	7 cut(s)	223, 308, 461, 526, 649, 895, 1052
FaqI	GGGAC	2 cut(s)	77, 122
FatI	CATG	7 cut(s)	219, 304, 457, 522, 645, 891, 1048
Fnu4HI	GCNGC	4 cut(s)	37, 176, 496, 653
FokI	GGATG	5 cut(s)	359, 452, 569, 908, 1028
Fsp4HI	GCNGC	4 cut(s)	37, 176, 496, 653
FspBI	CTAG	2 cut(s)	105, 290
GlaI	GCGC	2 cut(s)	981, 983
GluI	GCNGC	4 cut(s)	37, 176, 496, 653
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	3 cut(s)	36, 206, 931
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	2 cut(s)	241, 658
HhaI	GCGC	2 cut(s)	982, 984
Hin1II	CATG	7 cut(s)	223, 308, 461, 526, 649, 895, 1052
Hin6I	GCGC	2 cut(s)	980, 982
HinP1I	GCGC	2 cut(s)	980, 982
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	1002
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	3 cut(s)	199, 520, 883
Hpy188I	TCNGA	5 cut(s)	254, 346, 747, 910, 947
Hpy188III	TCNNGA	8 cut(s)	368, 383, 437, 529, 677, 759, 774, 1015
Hpy8I	GTNNAC	3 cut(s)	199, 520, 883
HpyAV	CCTTC	3 cut(s)	68, 217, 919
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	841
HpyCH4V	TGCA	9 cut(s)	23, 66, 223, 304, 470, 495, 806, 872, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	649
HpyF3I	CTNAG	4 cut(s)	251, 324, 403, 746
HpySE526I	ACGT	1 cut(s)	841
Hsp92II	CATG	7 cut(s)	223, 308, 461, 526, 649, 895, 1052
HspAI	GCGC	2 cut(s)	980, 982
Kzo9I	GATC	4 cut(s)	132, 414, 454, 988
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	3 cut(s)	162, 507, 664
LweI	GCATC	7 cut(s)	10, 291, 318, 430, 457, 948, 1050
MaeI	CTAG	2 cut(s)	105, 290
MaeII	ACGT	1 cut(s)	841
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	4 cut(s)	134, 416, 456, 990
MboI	GATC	4 cut(s)	132, 414, 454, 988
MboII	GAAGA	5 cut(s)	142, 371, 487, 584, 983
MflI	RGATCY	1 cut(s)	988
MluCI	AATT	8 cut(s)	42, 78, 84, 225, 258, 275, 359, 659
MmeI	TCCRAC	2 cut(s)	141, 534
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	818
MseI	TTAA	6 cut(s)	81, 429, 563, 863, 950, 1060
MslI	CAYNNNNRTG	5 cut(s)	218, 372, 462, 890, 896
MspI	CCGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	982
MwoI	GCNNNNNNNGC	1 cut(s)	649
NdeII	GATC	4 cut(s)	132, 414, 454, 988
NlaIII	CATG	7 cut(s)	223, 308, 461, 526, 649, 895, 1052
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	306
PauI	GCGCGC	1 cut(s)	980
PceI	AGGCCT	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	1 cut(s)	1002
PflMI	CCANNNNNTGG	1 cut(s)	938
PkrI	GCNGC	4 cut(s)	38, 177, 497, 654
Psp1406I	AACGTT	1 cut(s)	841
PspN4I	GGNNCC	1 cut(s)	930
PspPI	GGNCC	2 cut(s)	47, 929
PsuI	RGATCY	1 cut(s)	988
PteI	GCGCGC	1 cut(s)	980
RsaI	GTAC	2 cut(s)	735, 755
RsaNI	GTAC	2 cut(s)	734, 754
RseI	CAYNNNNRTG	5 cut(s)	218, 372, 462, 890, 896
SaqAI	TTAA	6 cut(s)	81, 429, 563, 863, 950, 1060
SatI	GCNGC	4 cut(s)	37, 176, 496, 653
Sau3AI	GATC	4 cut(s)	132, 414, 454, 988
Sau96I	GGNCC	2 cut(s)	47, 929
ScaI	AGTACT	2 cut(s)	735, 755
SetI	ASST	9 cut(s)	147, 321, 354, 390, 515, 606, 611, 844, 879
SfaNI	GCATC	7 cut(s)	10, 291, 318, 430, 457, 948, 1050
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	5 cut(s)	218, 372, 462, 890, 896
SmlI	CTYRAG	3 cut(s)	332, 737, 1013
SmoI	CTYRAG	3 cut(s)	332, 737, 1013
Sse9I	AATT	8 cut(s)	42, 78, 84, 225, 258, 275, 359, 659
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	37
SspI	AATATT	1 cut(s)	831
SspMI	CTAG	2 cut(s)	105, 290
StuI	AGGCCT	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	844
TaqI	TCGA	3 cut(s)	57, 540, 1005
TasI	AATT	8 cut(s)	42, 78, 84, 225, 258, 275, 359, 659
TatI	WGTACW	2 cut(s)	733, 753
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	1002
Tru1I	TTAA	6 cut(s)	81, 429, 563, 863, 950, 1060
Tru9I	TTAA	6 cut(s)	81, 429, 563, 863, 950, 1060
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	175, 495, 652
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	9 cut(s)	158, 208, 353, 518, 581, 584, 652, 701, 809
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	4 cut(s)	84, 258, 275, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	2 cut(s)	105, 290
ZrmI	AGTACT	2 cut(s)	735, 755
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.