Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000429.1

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Forward (+)

193763 .. 194257

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000429.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgagagaaccaaaccaagatgcagtagtttccggccgcaaaattggaccaatcatcgatgtttgcaaggaggaaggaattaaaattccagtcccaaccagaactagggacttcccagagattagtaagaagatcaatgataagcttacttatagcctgttggaacttcatttgctgcctgctcgtatttcaactgttgacgaggccttcgccactttcatgcaaattatgacgctgaccaaagaatcgctcagaaaaattcttgtgagaggggaatttgatgagttcctagatgatgagatgcatggcactggaaagctggctgagatgctcaagcagttctcggatgagcttgaccaatttcatcatgattatggtcttcgtgacctcaaaaataacttcttagagaccaagatcaactatatctttaatactcgggatgctgtcaaacaagatcatgtagatgatgcagggaagaacaaagaggagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

164

Amino Acids

18.98

Weight (kDa)

5.28

Isoelectric Point (pI)

23.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	3 cut(s)	84, 258, 275
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	192
AluBI	AGCT	3 cut(s)	145, 319, 352
AluI	AGCT	3 cut(s)	145, 319, 352
Alw26I	GTCTC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	2 cut(s)	34, 204
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	3 cut(s)	84, 258, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	2 cut(s)	105, 290
BisI	GCNGC	2 cut(s)	37, 176
BlsI	GCNGC	2 cut(s)	38, 177
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	47
BmsI	GCATC	5 cut(s)	10, 291, 318, 430, 457
BpiI	GAAGAC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	89, 316
BseCI	ATCGAT	1 cut(s)	57
BseGI	GGATG	2 cut(s)	352, 445
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	265, 315
BseNI	ACTGG	2 cut(s)	89, 316
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	36, 206
BshVI	ATCGAT	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	77, 122
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	77, 122
BsnI	GGCC	2 cut(s)	36, 206
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	132, 414, 454
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	36, 206
BspCNI	CTCAG	2 cut(s)	264, 316
BspDI	ATCGAT	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	89, 316
BssMI	GATC	3 cut(s)	132, 414, 454
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	180, 321
BstDEI	CTNAG	3 cut(s)	251, 324, 403
BstF5I	GGATG	2 cut(s)	352, 445
BstKTI	GATC	3 cut(s)	135, 417, 457
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	3 cut(s)	132, 414, 454
BstMCI	CGRYCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	371
BstZI	CGGCCG	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	36, 206
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	352, 445
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	180, 321
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	241
CviAII	CATG	4 cut(s)	220, 305, 368, 458
CviJI	RGCY	7 cut(s)	36, 145, 156, 206, 319, 323, 352
CviKI_1	RGCY	7 cut(s)	36, 145, 156, 206, 319, 323, 352
DdeI	CTNAG	3 cut(s)	251, 324, 403
DpnI	GATC	3 cut(s)	134, 416, 456
DpnII	GATC	3 cut(s)	132, 414, 454
EaeI	YGGCCR	1 cut(s)	34
EagI	CGGCCG	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	34
Eco147I	AGGCCT	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	4 cut(s)	223, 308, 371, 461
FaiI	YATR	8 cut(s)	153, 221, 230, 306, 369, 375, 423, 459
FaqI	GGGAC	2 cut(s)	77, 122
FatI	CATG	4 cut(s)	219, 304, 367, 457
Fnu4HI	GCNGC	2 cut(s)	37, 176
FokI	GGATG	2 cut(s)	359, 452
Fsp4HI	GCNGC	2 cut(s)	37, 176
FspBI	CTAG	2 cut(s)	105, 290
GluI	GCNGC	2 cut(s)	37, 176
HaeIII	GGCC	2 cut(s)	36, 206
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	223, 308, 371, 461
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	254, 346
Hpy188III	TCNNGA	3 cut(s)	368, 383, 437
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	68, 217
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	23, 66, 223, 304, 470
HpyF3I	CTNAG	3 cut(s)	251, 324, 403
Hsp92II	CATG	4 cut(s)	223, 308, 371, 461
Kzo9I	GATC	3 cut(s)	132, 414, 454
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	9 cut(s)	46, 102, 112, 129, 170, 192, 297, 305, 456
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	5 cut(s)	10, 291, 318, 430, 457
MaeI	CTAG	2 cut(s)	105, 290
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	3 cut(s)	134, 416, 456
MboI	GATC	3 cut(s)	132, 414, 454
MboII	GAAGA	3 cut(s)	142, 371, 487
MluCI	AATT	7 cut(s)	42, 78, 84, 225, 258, 275, 359
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	64, 196, 263, 398, 478
Mph1103I	ATGCAT	1 cut(s)	306
MseI	TTAA	2 cut(s)	81, 429
MslI	CAYNNNNRTG	3 cut(s)	218, 372, 462
MspI	CCGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	132, 414, 454
NlaIII	CATG	4 cut(s)	223, 308, 371, 461
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	306
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	38, 177
PspPI	GGNCC	1 cut(s)	47
RseI	CAYNNNNRTG	3 cut(s)	218, 372, 462
SaqAI	TTAA	2 cut(s)	81, 429
SatI	GCNGC	2 cut(s)	37, 176
Sau3AI	GATC	3 cut(s)	132, 414, 454
Sau96I	GGNCC	1 cut(s)	47
SetI	ASST	4 cut(s)	147, 321, 354, 390
SfaNI	GCATC	5 cut(s)	10, 291, 318, 430, 457
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	3 cut(s)	218, 372, 462
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	7 cut(s)	42, 78, 84, 225, 258, 275, 359
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	105, 290
StuI	AGGCCT	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	57
TasI	AATT	7 cut(s)	42, 78, 84, 225, 258, 275, 359
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	81, 429
Tru9I	TTAA	2 cut(s)	81, 429
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	158, 208, 353
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	3 cut(s)	84, 258, 275
XspI	CTAG	2 cut(s)	105, 290
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.