Rroxscaffold_3G00222760
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009680
Physical Location & Seq
Reverse (-)
5821822 .. 5833971
12150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222760.1

Sequence Viewer

Length: 1014 bp
ATGGCACGCGAGCGAGAACAAGTTCCAAGCAAGTTCCATATTCCAATGGGTTGTAAAGTTCAAGCTGTTAAAGCTGGCGATAGGAGAATATTAAAACTTGTATTCAATGGGAACTTAGCTAGAAAAAAATTGAAGAATACAGCTATCGATCGGATTCCCAGCCAATGCTCCCCAAGTTTGCAACTAATTTGCATTAGAAGGGAGGGTGGAAAGAGGAAAACAAATCACAAAGTTCGAGAGAAAGCAAAACGAAAGATGAGAGAACCAAATCAAGATGCAGTAGTTTCCGGCAGCAAAATTGGACCAATCATCGATGTTTGCAAGGAGGAAGGAATTAAAATTCCAGTCCCAACCAGAACTAGGGACTTCCCAGAGATTAGTAAGAACATCAATGATAAGCTTACTTATAGCCTGTTGGAACTTCATTTGCTGCCTGCTCGTATTTCAACTGTTGACGAGGCCTTCGCCACTTTCATGCAAATTATGACGCTGACCAAAGAATCGCTCAGAAAAACTCTTGTGGGAGGAGAATTTGATGAGTTCCTAGATGATGAGATGCATGGCACTGGAAAGCTGGCTGAGATGCTCAAGCAGTTCTCAGATGAGCTTGACCAATTTCATCACGATTATGGTCTTCGTGACCTCAAAAATAACTTCTTAGAGACCGAGATCAACTATATCCTTAATACTCGGGATGCTGTCAAAGGAGATATACGTACTCATCTTCATTTGGAGGTCAGCTCTCTTTCCTATATTCTTTTAGGCGGAATGAGGCACATGACGCAGCAGTGGATAAATGAGAGTATGGAAATGAAGGAAACGTTAGTGAAAGATAGGGGTTATAGGCCTGATTTTTTGACTGAGCATAATAGTCTCATATCTAAACGCAGGGAATTCATATATGGAGTTCTTGATGATAAGAAAAAGCCCTCGGAGAGCATTGGGGAGATTGAAGTTGAGGGTCGAGGAAGTACTCACGAGATGTATTATCCCGAGCCTTTTGTGTCAAAATGA

Protein Analysis

337

Amino Acids

38.82

Weight (kDa)

8.94

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 123 - 225 4e-06 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 1 cut(s) 765
AclI AACGTT 1 cut(s) 821
AcsI RAATTY 3 cut(s) 339, 530, 893
AfaI GTAC 2 cut(s) 718, 973
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 5 cut(s) 62, 106, 133, 447, 953
AluBI AGCT 8 cut(s) 65, 74, 119, 143, 400, 574, 607, 741
AluI AGCT 8 cut(s) 65, 74, 119, 143, 400, 574, 607, 741
Alw26I GTCTC 2 cut(s) 656, 878
Ama87I CYCGRG 2 cut(s) 690, 992
AoxI GGCC 2 cut(s) 459, 845
ApeKI GCWGC 3 cut(s) 291, 430, 784
ApoI RAATTY 3 cut(s) 339, 530, 893
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 302
AvaI CYCGRG 2 cut(s) 690, 992
AvaII GGWCC 1 cut(s) 302
BauI CACGAG 1 cut(s) 977
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 3 cut(s) 303, 417, 796
BcoDI GTCTC 2 cut(s) 656, 878
BfaI CTAG 3 cut(s) 120, 360, 545
BisI GCNGC 3 cut(s) 292, 431, 785
BlsI GCNGC 3 cut(s) 293, 432, 786
BmcAI AGTACT 1 cut(s) 973
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 2 cut(s) 690, 992
BmgT120I GGNCC 1 cut(s) 302
BmsI GCATC 4 cut(s) 265, 546, 573, 685
BpiI GAAGAC 1 cut(s) 626
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpuEI CTTGAG 1 cut(s) 572
Bsa29I ATCGAT 2 cut(s) 147, 312
BsaAI YACGTR 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 930
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 344, 571
BseCI ATCGAT 2 cut(s) 147, 312
BseDI CCNNGG 1 cut(s) 930
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMII CTCAG 4 cut(s) 520, 570, 612, 852
BseNI ACTGG 2 cut(s) 344, 571
BseRI GAGGAG 1 cut(s) 540
BseXI GCAGC 3 cut(s) 303, 417, 796
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 461, 847
BshVI ATCGAT 2 cut(s) 147, 312
BsiEI CGRYCG 1 cut(s) 151
BsiHKCI CYCGRG 2 cut(s) 690, 992
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 332, 377
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 2 cut(s) 656, 878
BsmFI GGGAC 2 cut(s) 332, 377
BsnI GGCC 2 cut(s) 461, 847
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 2 cut(s) 690, 992
Bsp143I GATC 2 cut(s) 148, 669
BspACI CCGC 1 cut(s) 765
BspANI GGCC 2 cut(s) 461, 847
BspCNI CTCAG 4 cut(s) 519, 571, 611, 853
BspDI ATCGAT 2 cut(s) 147, 312
BspFNI CGCG 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 656
BsrI ACTGG 2 cut(s) 344, 571
BssECI CCNNGG 1 cut(s) 930
BssMI GATC 2 cut(s) 148, 669
BssSI CACGAG 1 cut(s) 977
Bst2BI CACGAG 1 cut(s) 977
Bst4CI ACNGT 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 716
BstC8I GCNNGC 5 cut(s) 7, 11, 76, 435, 576
BstDEI CTNAG 6 cut(s) 115, 506, 579, 598, 658, 861
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 2 cut(s) 151, 672
BstMAI GTCTC 2 cut(s) 656, 878
BstMBI GATC 2 cut(s) 148, 669
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 71, 781
BstSNI TACGTA 1 cut(s) 716
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 303, 417, 796
BstV2I GAAGAC 1 cut(s) 626
Bsu15I ATCGAT 2 cut(s) 147, 312
BsuRI GGCC 2 cut(s) 461, 847
BsuTUI ATCGAT 2 cut(s) 147, 312
BtsCI GGATG 1 cut(s) 700
BtsI GCAGTG 1 cut(s) 794
BtsIMutI CAGTG 2 cut(s) 564, 794
Cac8I GCNNGC 5 cut(s) 7, 11, 76, 435, 576
Cfr13I GGNCC 1 cut(s) 302
ClaI ATCGAT 2 cut(s) 147, 312
CseI GACGC 2 cut(s) 496, 790
Csp6I GTAC 2 cut(s) 717, 972
CviAII CATG 3 cut(s) 475, 560, 778
CviQI GTAC 2 cut(s) 717, 972
DdeI CTNAG 6 cut(s) 115, 506, 579, 598, 658, 861
DpnI GATC 2 cut(s) 150, 671
DpnII GATC 2 cut(s) 148, 669
EciI GGCGGA 1 cut(s) 780
Eco105I TACGTA 1 cut(s) 716
Eco147I AGGCCT 2 cut(s) 461, 847
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 302
Eco88I CYCGRG 2 cut(s) 690, 992
EcoRI GAATTC 1 cut(s) 893
EcoT22I ATGCAT 1 cut(s) 561
FaeI CATG 3 cut(s) 478, 563, 781
FaqI GGGAC 2 cut(s) 332, 377
FatI CATG 3 cut(s) 474, 559, 777
Fnu4HI GCNGC 3 cut(s) 292, 431, 785
FokI GGATG 1 cut(s) 707
Fsp4HI GCNGC 3 cut(s) 292, 431, 785
FspBI CTAG 3 cut(s) 120, 360, 545
GluI GCNGC 3 cut(s) 292, 431, 785
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 461, 847
HapII CCGG 1 cut(s) 288
HgaI GACGC 2 cut(s) 496, 790
Hin1II CATG 3 cut(s) 478, 563, 781
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 2 cut(s) 154, 500
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 4 cut(s) 153, 509, 601, 934
Hpy188III TCNNGA 8 cut(s) 236, 272, 623, 638, 692, 911, 977, 992
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 4 cut(s) 192, 323, 472, 808
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 2 cut(s) 715, 821
HpyCH4V TGCA 6 cut(s) 181, 192, 278, 321, 478, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 781
HpyF3I CTNAG 6 cut(s) 115, 506, 579, 598, 658, 861
HpySE526I ACGT 2 cut(s) 715, 821
Hsp92II CATG 3 cut(s) 478, 563, 781
Kzo9I GATC 2 cut(s) 148, 669
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 3 cut(s) 303, 417, 796
LweI GCATC 4 cut(s) 265, 546, 573, 685
MaeI CTAG 3 cut(s) 120, 360, 545
MaeII ACGT 2 cut(s) 715, 821
MaeIII GTNAC 1 cut(s) 638
MalI GATC 2 cut(s) 150, 671
MboI GATC 2 cut(s) 148, 669
MboII GAAGA 3 cut(s) 145, 626, 716
MluCI AATT 9 cut(s) 128, 186, 297, 333, 339, 480, 530, 614, 893
MmeI TCCRAC 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 4 cut(s) 69, 92, 336, 684
MslI CAYNNNNRTG 2 cut(s) 473, 627
MspI CCGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 71, 781
NdeII GATC 2 cut(s) 148, 669
NlaIII CATG 3 cut(s) 478, 563, 781
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 561
PceI AGGCCT 2 cut(s) 461, 847
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 154, 500
PkrI GCNGC 3 cut(s) 293, 432, 786
Ple19I CGATCG 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 716
Psp1406I AACGTT 1 cut(s) 821
PspFI CCCAGC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 302
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 2 cut(s) 718, 973
RsaNI GTAC 2 cut(s) 717, 972
RseI CAYNNNNRTG 2 cut(s) 473, 627
SaqAI TTAA 4 cut(s) 69, 92, 336, 684
SatI GCNGC 3 cut(s) 292, 431, 785
Sau3AI GATC 2 cut(s) 148, 669
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 973
SfaNI GCATC 4 cut(s) 265, 546, 573, 685
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 473, 627
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SnaBI TACGTA 1 cut(s) 716
Sse9I AATT 9 cut(s) 128, 186, 297, 333, 339, 480, 530, 614, 893
SseBI AGGCCT 2 cut(s) 461, 847
SsiI CCGC 1 cut(s) 765
SspI AATATT 1 cut(s) 90
SspMI CTAG 3 cut(s) 120, 360, 545
StuI AGGCCT 2 cut(s) 461, 847
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 2 cut(s) 718, 824
TaqI TCGA 4 cut(s) 147, 235, 312, 964
TaqII GACCGA 1 cut(s) 680
TasI AATT 9 cut(s) 128, 186, 297, 333, 339, 480, 530, 614, 893
TatI WGTACW 1 cut(s) 971
TfiI GAWTC 2 cut(s) 154, 500
Tru1I TTAA 4 cut(s) 69, 92, 336, 684
Tru9I TTAA 4 cut(s) 69, 92, 336, 684
TscAI CASTG 2 cut(s) 571, 794
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 3 cut(s) 291, 430, 784
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 6 cut(s) 413, 463, 608, 716, 827, 886
TspRI CASTG 2 cut(s) 571, 794
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 3 cut(s) 339, 530, 893
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 3 cut(s) 120, 360, 545
ZrmI AGTACT 1 cut(s) 973
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.