Rh4CG238300

mitochondrial fission

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009680
Physical Location & Seq
Forward (+)
48309718 .. 48310950
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG238300.1

Sequence Viewer

Length: 1233 bp
ATGGGGAGAAAGAGAAAAAACAAATCAGGTTCCAGGGAAAGAAAGACCAGATCAGAAATGGGAGTAGCAAGCCAAGATGCTGTAATTCCTCGTCGCAAGATCCGACATGTCATCAATTCTTGCAAGGAGGAAGGGATTGAAATTCCAGTCCCAACCAGAGCTAGAGACTTGCCAGAGATTGCTAAGAAGATCGATGCCAAGCTCAGTTACTGCCTCTCGGAACTTAATTTGCTGCCTGCTAGTATTTCATCGGTTGATGAGGCGGTTGCCACTTTCATGCAACTGGTGGCATTGTCCAAAGAATCTCTCATAAAAATTCTTGTGAGAGGAGAATTTGATGAGTATCCGGATGACAAGAGCATGCACGGCACTGCAAACCTGGCTGAGATGCTCAATCAGTTCAAGGATGAACGTGGCTGGCTGCATTCCAGCTTTTTCCGACGTGACCTCAAAAGTAACTTCCTACAGTCGGAGATCAACTACTGTATGTTTACTCAGCAGGTGGGAAAAGCCAGTGGTCTTGCAGAGAAACTTGCGGCGGATCTTACAGCAGATCTAGTTGCGGTGGAACATCACCATGATTCCTGGTTTCTGGATATGTTATGGTATTACGTGATCATGCAAGTAACTCGTTCTGTGTTAATGACTTATCTATCGAGATATGTTCATTTTTGTATTCATGTTGTGTCACTTGTTTATAATCTAATGGACAAGATGATTCAGAGGTCGTATCAGTGGACGCATGAGAACTATTATACCGTGAATGTGAATGAGGAAAAAACGGATGAGTTTTTTTCCGAGTATACTAGACTTATGTCCAAATGCAATGTATTCATCCATGGAGTCCTTGATGATCCGGAAAAGCCCTCTACAATTATTGTAGACGGTATTGGGGAGATTGTGGTTGAAGGTCTTAGGAGTTACTCGCGTGATCTACTATCTGAAGCCATTAGCGTCAGAATGCAATCAATTGCATTTCGGAAGATACATATAGAAACTTTTATTGAAGGTATGGCTTCTCATTTGCAGTCGAGTGTTGCAAACCTTCTGGACACATACATGGATTTGGAGATGTTCGATATGCAGATCTTGAAGAGGCCAAATTTTGCTCATGTATTTGAGGATATGGTTGAGAACTATCCTTTGGCACGCAAGGGTCTTGAAAAGAGAATCAATATGCTCAAGAAAGCAAAGGAGATTTGTGAGGGGATCATGGATGCTTATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Dynamin_N

Protein Analysis

410

Amino Acids

47.38

Weight (kDa)

6.05

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 56 - 245 7.5e-09 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 490
AccI GTMKAC 2 cut(s) 803, 882
AccII CGCG 1 cut(s) 928
AccIII TCCGGA 2 cut(s) 346, 856
AciI CCGC 4 cut(s) 263, 536, 539, 563
AclWI GGATC 4 cut(s) 94, 549, 848, 1217
AcsI RAATTY 4 cut(s) 141, 315, 332, 1102
AcuI CTGAAG 1 cut(s) 963
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 6 cut(s) 140, 403, 908, 1007, 1093, 1163
AjiI CACGTC 1 cut(s) 443
AjnI CCWGG 3 cut(s) 32, 378, 584
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AluBI AGCT 3 cut(s) 161, 202, 432
AluI AGCT 3 cut(s) 161, 202, 432
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 4 cut(s) 94, 549, 848, 1217
AlwNI CAGNNNCTG 1 cut(s) 210
Aor13HI TCCGGA 2 cut(s) 346, 856
AoxI GGCC 1 cut(s) 1097
ApeKI GCWGC 2 cut(s) 232, 421
ApoI RAATTY 4 cut(s) 141, 315, 332, 1102
AsuHPI GGTGA 1 cut(s) 566
BbvI GCAGC 2 cut(s) 219, 408
BceAI ACGGC 1 cut(s) 382
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 3 cut(s) 34, 380, 586
BciVI GTATCC 1 cut(s) 354
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 4 cut(s) 162, 240, 557, 807
BfmI CTRYAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 490
BfuI GTATCC 1 cut(s) 354
BglII AGATCT 2 cut(s) 553, 1086
BisI GCNGC 3 cut(s) 233, 422, 537
BlsI GCNGC 3 cut(s) 234, 423, 538
Bme1390I CCNGG 3 cut(s) 34, 380, 586
BmgBI CACGTC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 3 cut(s) 34, 380, 586
BmsI GCATC 4 cut(s) 67, 184, 378, 1207
BoxI GACNNNNGTC 1 cut(s) 814
BpuEI CTTGAG 1 cut(s) 1166
Bsa29I ATCGAT 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 613
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 33, 838
BsaWI WCCGGW 2 cut(s) 346, 856
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 3 cut(s) 146, 288, 513
Bse3DI GCAATG 1 cut(s) 832
Bse8I GATNNNNATC 1 cut(s) 342
BseAI TCCGGA 2 cut(s) 346, 856
BseBI CCWGG 3 cut(s) 34, 380, 586
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 33, 838
BseGI GGATG 5 cut(s) 355, 412, 790, 834, 1222
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 3 cut(s) 217, 375, 509
BseNI ACTGG 3 cut(s) 146, 288, 513
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 2 cut(s) 219, 408
Bsh1236I CGCG 1 cut(s) 928
BshFI GGCC 1 cut(s) 1099
BshVI ATCGAT 1 cut(s) 192
BsiSI CCGG 2 cut(s) 347, 857
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 2 cut(s) 424, 966
BsnI GGCC 1 cut(s) 1099
Bsp13I TCCGGA 2 cut(s) 346, 856
Bsp19I CCATGG 1 cut(s) 838
BspACI CCGC 4 cut(s) 263, 536, 539, 563
BspANI GGCC 1 cut(s) 1099
BspCNI CTCAG 3 cut(s) 216, 376, 508
BspDI ATCGAT 1 cut(s) 192
BspEI TCCGGA 2 cut(s) 346, 856
BspFNI CGCG 1 cut(s) 928
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 4 cut(s) 94, 549, 848, 1217
BsrDI GCAATG 1 cut(s) 832
BsrI ACTGG 3 cut(s) 146, 288, 513
BssECI CCNNGG 2 cut(s) 33, 838
BssNAI GTATAC 1 cut(s) 804
BssT1I CCWWGG 1 cut(s) 838
Bst1107I GTATAC 1 cut(s) 804
Bst2UI CCWGG 3 cut(s) 34, 380, 586
Bst4CI ACNGT 4 cut(s) 468, 485, 760, 887
Bst6I CTCTTC 1 cut(s) 1088
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 5 cut(s) 70, 237, 362, 419, 1150
BstDEI CTNAG 5 cut(s) 183, 203, 384, 495, 914
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 5 cut(s) 355, 412, 790, 834, 1222
BstFNI CGCG 1 cut(s) 928
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 366, 380
BstNI CCWGG 3 cut(s) 34, 380, 586
BstNSI RCATGY 2 cut(s) 110, 364
BstPAI GACNNNNGTC 1 cut(s) 814
BstSCI CCNGG 3 cut(s) 32, 378, 584
BstSFI CTRYAG 1 cut(s) 464
BstUI CGCG 1 cut(s) 928
BstV1I GCAGC 2 cut(s) 219, 408
BstX2I RGATCY 4 cut(s) 99, 541, 553, 1086
BstYI RGATCY 4 cut(s) 99, 541, 553, 1086
BstZ17I GTATAC 1 cut(s) 804
Bsu15I ATCGAT 1 cut(s) 192
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 1099
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 838
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 5 cut(s) 355, 412, 790, 834, 1222
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 369, 520, 740
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 5 cut(s) 70, 237, 362, 419, 1150
CaiI CAGNNNCTG 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 2 cut(s) 748, 943
DdeI CTNAG 5 cut(s) 183, 203, 384, 495, 914
Eam1104I CTCTTC 1 cut(s) 1088
EarI CTCTTC 1 cut(s) 1088
EciI GGCGGA 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 963
EcoRII CCWGG 3 cut(s) 32, 378, 584
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
FaqI GGGAC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 2 cut(s) 803, 882
Fnu4HI GCNGC 3 cut(s) 233, 422, 537
FokI GGATG 5 cut(s) 362, 419, 797, 821, 1229
Fsp4HI GCNGC 3 cut(s) 233, 422, 537
FspBI CTAG 4 cut(s) 162, 240, 557, 807
GluI GCNGC 3 cut(s) 233, 422, 537
HaeIII GGCC 1 cut(s) 1099
HapII CCGG 2 cut(s) 347, 857
HgaI GACGC 2 cut(s) 748, 943
HinfI GANTC 5 cut(s) 302, 581, 718, 843, 1170
HpaII CCGG 2 cut(s) 347, 857
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 4 cut(s) 492, 738, 804, 883
Hpy188III TCNNGA 8 cut(s) 347, 593, 657, 857, 1049, 1090, 1160, 1183
Hpy8I GTNNAC 4 cut(s) 492, 738, 804, 883
Hpy99I CGWCG 2 cut(s) 96, 444
HpyAV CCTTC 4 cut(s) 125, 902, 1001, 1055
HpyCH4III ACNGT 4 cut(s) 468, 485, 760, 887
HpyCH4IV ACGT 3 cut(s) 412, 442, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 380
HpyF3I CTNAG 5 cut(s) 183, 203, 384, 495, 914
HpySE526I ACGT 3 cut(s) 412, 442, 612
Kpn2I TCCGGA 2 cut(s) 346, 856
Ksp22I TGATCA 1 cut(s) 615
Lsp1109I GCAGC 2 cut(s) 219, 408
LweI GCATC 4 cut(s) 67, 184, 378, 1207
MaeI CTAG 4 cut(s) 162, 240, 557, 807
MaeII ACGT 3 cut(s) 412, 442, 612
MaeIII GTNAC 6 cut(s) 206, 443, 455, 625, 687, 920
MboII GAAGA 3 cut(s) 199, 994, 1105
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 4 cut(s) 99, 541, 553, 1086
MluCI AATT 9 cut(s) 84, 115, 141, 226, 315, 332, 873, 969, 1102
MlyI GAGTC 1 cut(s) 852
MmeI TCCRAC 3 cut(s) 127, 450, 463
MroI TCCGGA 2 cut(s) 346, 856
MseI TTAA 2 cut(s) 225, 641
MslI CAYNNNNRTG 3 cut(s) 275, 576, 1058
MspI CCGG 2 cut(s) 347, 857
MspR9I CCNGG 3 cut(s) 34, 380, 586
MunI CAATTG 1 cut(s) 969
Mva1269I GAATGC 2 cut(s) 424, 966
MvaI CCWGG 3 cut(s) 34, 380, 586
MvnI CGCG 1 cut(s) 928
MwoI GCNNNNNNNGC 2 cut(s) 366, 380
NcoI CCATGG 1 cut(s) 838
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 443, 687
NspI RCATGY 2 cut(s) 110, 364
PaeI GCATGC 1 cut(s) 364
PaqCI CACCTGC 1 cut(s) 490
PciI ACATGT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PctI GAATGC 2 cut(s) 424, 966
PfeI GAWTC 4 cut(s) 302, 581, 718, 1170
PkrI GCNGC 3 cut(s) 234, 423, 538
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 613
PscI ACATGT 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 814
PsiI TTATAA 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 32, 378, 584
PspGI CCWGG 3 cut(s) 32, 378, 584
PspN4I GGNNCC 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 210
PsuI RGATCY 4 cut(s) 99, 541, 553, 1086
RseI CAYNNNNRTG 3 cut(s) 275, 576, 1058
SaqAI TTAA 2 cut(s) 225, 641
SatI GCNGC 3 cut(s) 233, 422, 537
SchI GAGTC 1 cut(s) 852
ScrFI CCNGG 3 cut(s) 34, 380, 586
SfaNI GCATC 4 cut(s) 67, 184, 378, 1207
SfcI CTRYAG 1 cut(s) 464
SmiMI CAYNNNNRTG 3 cut(s) 275, 576, 1058
SmlI CTYRAG 1 cut(s) 1181
SmoI CTYRAG 1 cut(s) 1181
SphI GCATGC 1 cut(s) 364
Sse9I AATT 9 cut(s) 84, 115, 141, 226, 315, 332, 873, 969, 1102
SsiI CCGC 4 cut(s) 263, 536, 539, 563
SspMI CTAG 4 cut(s) 162, 240, 557, 807
StyD4I CCNGG 3 cut(s) 32, 378, 584
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 4 cut(s) 468, 485, 760, 887
TaiI ACGT 3 cut(s) 415, 445, 615
TaqI TCGA 4 cut(s) 192, 656, 1031, 1077
TasI AATT 9 cut(s) 84, 115, 141, 226, 315, 332, 873, 969, 1102
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 4 cut(s) 302, 581, 718, 1170
Tru1I TTAA 2 cut(s) 225, 641
Tru9I TTAA 2 cut(s) 225, 641
TscAI CASTG 3 cut(s) 376, 520, 740
TseFI GTSAC 2 cut(s) 443, 687
TseI GCWGC 2 cut(s) 232, 421
Tsp45I GTSAC 2 cut(s) 443, 687
TspDTI ATGAA 6 cut(s) 237, 265, 423, 656, 668, 823
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 3 cut(s) 376, 520, 740
XapI RAATTY 4 cut(s) 141, 315, 332, 1102
XceI RCATGY 2 cut(s) 110, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 2 cut(s) 803, 882
XspI CTAG 4 cut(s) 162, 240, 557, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.