Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009680

Physical Location & Seq

Genomic Coordinates Reverse (-)

28436430 .. 28439537

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0163300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTCCTCCTCCAGCGGCGTTGCGCCTCCGCGCTCTCCGCACCCCTCCAGCTCCGACGCTACGCCCAATCCGCCGCAGCCGCTCTCCTCGACGACGATTCCAACCCGGAATCCTTCCCCCGACCCGACCCGAAATACGACGAGACAATCCTTGCCGTCCCGCGCTTAACCTCCGGCAAAAGCATCGCCGCCAAAGAGCGGAAGGCCGGTCGCGTCCCCGGCATCATCTTCGAGCAAGAGGACGGCCAGCACGGCGGCAACAAGCGCCTCATCTCCGTCCGCACGAACCAGATCCGCAAGCTCCTCAATCATCTCGGCCGCTCTTTCTTCCTCTCCCGCCTCTTCCACCTCGAGGTCCGCTCCGACTTCGATGCAGACGACGTCGTTGAGAAAGTCCGCGTTTTACCGCGCTTGATTCATCTGCACTCGAGCACCGATGCTCCGCTTAATGTGACCTTCATAAGGGCCCCTTCAAATGCTTTGTTGAAAGTCGAAATTCCTCTTGTATTCAGAGGAGATGATATCTCTCCTGGATTGAAGAAAGGTGCATATTTAAATACAATCAAGAGGACGGTAAAGTTCCTTTGCCCTGCGGATGTAATTCCTCCATATATTGATGTGGATCTGAGTGAGTTGGATGTTGGCCAAAAGCTAGTTATGGGAGACCTCAAGGTTCATCCGACTCTAAAGCTTATTCAGTCAAAAGATGAGCCAATTTGTAAGATCATGGGTTCAAGAGTTTCTGACCAACAAAAGAAAACTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Dynamin_N

Protein Analysis

255

Amino Acids

28.48

Weight (kDa)

9.58

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L25p	PF01386	52 - 153	2.7e-09	Ribosomal L25p family
Ribosomal_TL5_C	PF14693	162 - 245	3.8e-20	Ribosomal protein TL5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16731 FvH4_4g16732
rosa_chinensis	RchiOBHm_Chr4g0420311 RchiOBHm_Chr7g0242331
rosa_laevigata	RLG00000000898 RLG00000007776
rosa_multiflora	Rmu_co8180380.1_g000001 Rmu_sc0000429.1_g000047 Rmu_sc0001767.1_g000004 Rmu_sc0018385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222760 Rroxscaffold_5G00362950
rosa_rugosa	Rorug04G0163300 Rorug07G0314900
rosa_samantha	Rh4AG224200 Rh4BG227200 Rh4CG238300 Rh4DG222800 Rh7AG470500 Rh7CG487100 Rh7DG455500
rosa_wichuraiana	Rw4G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	384
AbsI	CCTCGAGG	1 cut(s)	350
AccBSI	CCGCTC	4 cut(s)	83, 199, 321, 360
AccII	CGCG	5 cut(s)	32, 163, 213, 399, 409
AclWI	GGATC	2 cut(s)	286, 630
AcoI	YGGCCR	3 cut(s)	244, 316, 643
AcsI	RAATTY	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	381
AfiI	CCNNNNNNNGG	3 cut(s)	198, 352, 462
AgsI	TTSAA	4 cut(s)	474, 487, 538, 735
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	52, 301, 652, 691
AluI	AGCT	4 cut(s)	52, 301, 652, 691
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	2 cut(s)	137, 657
AlwI	GGATC	2 cut(s)	286, 630
Ama87I	CYCGRG	2 cut(s)	350, 427
AoxI	GGCC	5 cut(s)	204, 244, 316, 465, 643
ApaI	GGGCCC	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	495
AspLEI	GCGC	5 cut(s)	26, 34, 165, 267, 411
AspS9I	GGNCC	3 cut(s)	355, 465, 466
AsuC2I	CCSGG	2 cut(s)	107, 219
AvaI	CYCGRG	2 cut(s)	350, 427
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	89
BceAI	ACGGC	3 cut(s)	140, 259, 268
BcgI	CGANNNNNNTGC	6 cut(s)	166, 200, 211, 245, 353, 387
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	107, 219
BcoDI	GTCTC	2 cut(s)	137, 657
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	7 cut(s)	17, 75, 78, 81, 189, 256, 319
BlsI	GCNGC	7 cut(s)	18, 76, 79, 82, 190, 257, 320
Bme1390I	CCNGG	3 cut(s)	107, 219, 531
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	2 cut(s)	350, 427
BmgT120I	GGNCC	3 cut(s)	355, 465, 466
BmiI	GGNNCC	2 cut(s)	467, 468
BmrFI	CCNGG	3 cut(s)	107, 219, 531
BmsI	GCATC	4 cut(s)	192, 231, 361, 427
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	2 cut(s)	107, 219
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 352, 462
Bse118I	RCCGGY	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	3 cut(s)	601, 643, 676
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	3 cut(s)	198, 352, 462
BseMII	CTCAG	1 cut(s)	617
BseRI	GAGGAG	3 cut(s)	77, 293, 528
BseSI	GKGCMC	1 cut(s)	469
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	5 cut(s)	32, 163, 213, 399, 409
Bsh1285I	CGRYCG	2 cut(s)	211, 319
BshFI	GGCC	5 cut(s)	206, 246, 318, 467, 645
BsiEI	CGRYCG	2 cut(s)	211, 319
BsiHKAI	GWGCWC	1 cut(s)	434
BsiHKCI	CYCGRG	2 cut(s)	350, 427
BsiSI	CCGG	4 cut(s)	107, 174, 207, 219
BslFI	GGGAC	2 cut(s)	143, 200
BslI	CCNNNNNNNGG	3 cut(s)	198, 352, 462
BsmAI	GTCTC	2 cut(s)	137, 657
BsmFI	GGGAC	2 cut(s)	143, 200
BsnI	GGCC	5 cut(s)	206, 246, 318, 467, 645
Bso31I	GGTCTC	1 cut(s)	657
BsoBI	CYCGRG	2 cut(s)	350, 427
Bsp120I	GGGCCC	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	434, 469
Bsp143I	GATC	3 cut(s)	291, 622, 723
BspANI	GGCC	5 cut(s)	206, 246, 318, 467, 645
BspCNI	CTCAG	1 cut(s)	618
BspFNI	CGCG	5 cut(s)	32, 163, 213, 399, 409
BspLI	GGNNCC	2 cut(s)	467, 468
BspPI	GGATC	2 cut(s)	286, 630
BspTNI	GGTCTC	1 cut(s)	657
BsrBI	CCGCTC	4 cut(s)	83, 199, 321, 360
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	291, 622, 723
BssNI	GRCGYC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	248, 299
BstDEI	CTNAG	1 cut(s)	626
BstENI	CCTNNNNNAGG	1 cut(s)	460
BstF5I	GGATG	3 cut(s)	601, 643, 676
BstFNI	CGCG	5 cut(s)	32, 163, 213, 399, 409
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	5 cut(s)	26, 34, 165, 267, 411
BstKTI	GATC	3 cut(s)	294, 625, 726
BstMAI	GTCTC	2 cut(s)	137, 657
BstMBI	GATC	3 cut(s)	291, 622, 723
BstMCI	CGRYCG	2 cut(s)	211, 319
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 71, 80, 219, 252, 264
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	3 cut(s)	105, 217, 529
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	5 cut(s)	32, 163, 213, 399, 409
BstV1I	GCAGC	1 cut(s)	89
BstX2I	RGATCY	2 cut(s)	291, 622
BstYI	RGATCY	2 cut(s)	291, 622
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	206, 246, 318, 467, 645
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	601, 643, 676
Cac8I	GCNNGC	2 cut(s)	248, 299
CfoI	GCGC	5 cut(s)	26, 34, 165, 267, 411
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	3 cut(s)	355, 465, 466
CseI	GACGC	2 cut(s)	66, 202
CviAII	CATG	1 cut(s)	727
DdeI	CTNAG	1 cut(s)	626
DpnI	GATC	3 cut(s)	293, 624, 725
DpnII	GATC	3 cut(s)	291, 622, 723
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	3 cut(s)	244, 316, 643
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EciI	GGCGGA	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	657
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	350, 427
EcoNI	CCTNNNNNAGG	1 cut(s)	460
EcoO109I	RGGNCCY	2 cut(s)	465, 466
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	469
FaeI	CATG	1 cut(s)	730
FaiI	YATR	6 cut(s)	461, 550, 610, 612, 659, 728
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	2 cut(s)	143, 200
FatI	CATG	1 cut(s)	726
FauI	CCCGC	2 cut(s)	168, 344
Fnu4HI	GCNGC	7 cut(s)	17, 75, 78, 81, 189, 256, 319
FokI	GGATG	3 cut(s)	608, 650, 663
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	7 cut(s)	17, 75, 78, 81, 189, 256, 319
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	5 cut(s)	25, 33, 164, 266, 410
GluI	GCNGC	7 cut(s)	17, 75, 78, 81, 189, 256, 319
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	5 cut(s)	206, 246, 318, 467, 645
HapII	CCGG	4 cut(s)	107, 174, 207, 219
HgaI	GACGC	2 cut(s)	66, 202
HhaI	GCGC	5 cut(s)	26, 34, 165, 267, 411
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	730
Hin6I	GCGC	5 cut(s)	24, 32, 163, 265, 409
HinP1I	GCGC	5 cut(s)	24, 32, 163, 265, 409
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	4 cut(s)	98, 110, 415, 682
HpaII	CCGG	4 cut(s)	107, 174, 207, 219
Hpy188I	TCNGA	6 cut(s)	56, 364, 512, 627, 681, 745
Hpy188III	TCNNGA	2 cut(s)	565, 735
Hpy99I	CGWCG	6 cut(s)	60, 95, 98, 143, 383, 386
HpyAV	CCTTC	4 cut(s)	124, 196, 466, 480
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	374, 424, 548
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 71, 80, 219, 252, 264
HpyF3I	CTNAG	1 cut(s)	626
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	730
HspAI	GCGC	5 cut(s)	24, 32, 163, 265, 409
Kzo9I	GATC	3 cut(s)	291, 622, 723
LmnI	GCTCC	4 cut(s)	57, 306, 365, 445
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	4 cut(s)	192, 231, 361, 427
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	293, 624, 725
MbiI	CCGCTC	4 cut(s)	83, 199, 321, 360
MboI	GATC	3 cut(s)	291, 622, 723
MboII	GAAGA	4 cut(s)	220, 319, 334, 550
MflI	RGATCY	2 cut(s)	291, 622
MhlI	GDGCHC	2 cut(s)	434, 469
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	3 cut(s)	495, 600, 714
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	5 cut(s)	79, 126, 387, 615, 704
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	167, 447, 554
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	4 cut(s)	107, 174, 207, 219
MspR9I	CCNGG	3 cut(s)	107, 219, 531
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	5 cut(s)	32, 163, 213, 399, 409
MwoI	GCNNNNNNNGC	6 cut(s)	38, 71, 80, 219, 252, 264
NciI	CCSGG	2 cut(s)	107, 219
NdeII	GATC	3 cut(s)	291, 622, 723
NlaIII	CATG	1 cut(s)	730
NlaIV	GGNNCC	2 cut(s)	467, 468
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	451
PaeR7I	CTCGAG	2 cut(s)	350, 427
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	98, 110, 415
PflFI	GACNNNGTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	7 cut(s)	18, 76, 79, 82, 190, 257, 320
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	467, 468
PspOMI	GGGCCC	1 cut(s)	465
PspPI	GGNCC	3 cut(s)	355, 465, 466
PspXI	VCTCGAGB	2 cut(s)	350, 427
PsuI	RGATCY	2 cut(s)	291, 622
PsyI	GACNNNGTC	1 cut(s)	380
SaqAI	TTAA	3 cut(s)	167, 447, 554
SatI	GCNGC	7 cut(s)	17, 75, 78, 81, 189, 256, 319
Sau3AI	GATC	3 cut(s)	291, 622, 723
Sau96I	GGNCC	3 cut(s)	355, 465, 466
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	3 cut(s)	107, 219, 531
SduI	GDGCHC	2 cut(s)	434, 469
SfaNI	GCATC	4 cut(s)	192, 231, 361, 427
Sfr274I	CTCGAG	2 cut(s)	350, 427
SinI	GGWCC	1 cut(s)	355
SlaI	CTCGAG	2 cut(s)	350, 427
SmiI	ATTTAAAT	1 cut(s)	555
SmlI	CTYRAG	3 cut(s)	350, 427, 668
SmoI	CTYRAG	3 cut(s)	350, 427, 668
Sse9I	AATT	3 cut(s)	495, 600, 714
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	3 cut(s)	105, 217, 529
SwaI	ATTTAAAT	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	6 cut(s)	90, 231, 351, 369, 428, 492
TasI	AATT	3 cut(s)	495, 600, 714
TauI	GCSGC	6 cut(s)	19, 77, 83, 191, 258, 321
TfiI	GAWTC	3 cut(s)	98, 110, 415
Tru1I	TTAA	3 cut(s)	167, 447, 554
Tru9I	TTAA	3 cut(s)	167, 447, 554
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	407, 448, 665
TspGWI	ACGGA	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	495
XhoI	CTCGAG	2 cut(s)	350, 427
XspI	CTAG	1 cut(s)	653
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.