FvH4_4g19210
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008928
Physical Location & Seq
Reverse (-)
22913904 .. 22915474
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19210.t1

Sequence Viewer

Length: 297 bp
ATGGAGGTGGTTGCCCAAAGAGATGGTGTTGCATATCCGAGAGGCAAGAAAAGGTTTCACAAATTCACCTCCCTGAGCTCCCAGGTTCCTCAGCGCACAAGAAAGATAGCTATAGCAATGACAAAGCCGGCGAGGAATAAGATAAAGATTAAGAAGATTGACAACTTGTCGGCGAGGCAGGTGACGTTTTTGAAGAGGAGGAGAGGGCTTTTGAAGAAAGCTGGAGAGCTTTCGGTGCTATGTGATTGTGAGTATGCTGTGATCATCTTCTCTGCTACTGGGAATCTCTTCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

99

Amino Acids

11.08

Weight (kDa)

10.87

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 52 - 97 4.3e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 62
AgsI TTSAA 2 cut(s) 193, 214
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 4 cut(s) 78, 110, 221, 229
AluI AGCT 4 cut(s) 78, 110, 221, 229
Alw21I GWGCWC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 58, 193
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 2 cut(s) 74, 90
BsaJI CCNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 65, 104
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 211, 214
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 66, 103
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 188, 293
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 74, 90
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 127
CviJI RGCY 6 cut(s) 78, 110, 127, 208, 221, 229
CviKI_1 RGCY 6 cut(s) 78, 110, 127, 208, 221, 229
DdeI CTNAG 2 cut(s) 74, 90
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DriI GACNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 188, 293
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 2 cut(s) 188, 293
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 80
FaiI YATR 5 cut(s) 34, 113, 241, 255, 295
FbaI TGATCA 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 80
GlaI GCGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 96
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 1 cut(s) 283
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 58, 193
Hpy188I TCNGA 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 2 cut(s) 74, 90
HpySE526I ACGT 1 cut(s) 185
HspAI GCGC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 7 cut(s) 68, 86, 95, 141, 164, 207, 264
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 5 cut(s) 166, 205, 226, 259, 280
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 1 cut(s) 62
MnlI CCTC 8 cut(s) 35, 79, 99, 126, 168, 189, 192, 197
MroNI GCCGGC 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 235
NaeI GCCGGC 1 cut(s) 129
NdeII GATC 1 cut(s) 261
NgoMIV GCCGGC 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 181
PaqCI CACCTGC 1 cut(s) 169
PdiI GCCGGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 111
Sse9I AATT 1 cut(s) 62
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 188
TasI AATT 1 cut(s) 62
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.