Prupe.1G531500_v2.0.a1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008928
Physical Location & Seq
Forward (+)
43454705 .. 43457149
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G531500.1

Sequence Viewer

Length: 219 bp
ATGGTGAAAATGATGAGGGAGAAGATCAAGATCAAGAAGATTGACTACCTGCCAGCAAGGCAGGTGACCTTCTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCTGCAGAGCTATCTGTTCTGTGTGAATCTGAGGTGGCAGTTGTCATCTTTTCTGCTACTGGCAAGCTTTTTGATTATTCAAGCTCAAGTTTTCTTACTAGGAATAAAGTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

73

Amino Acids

8.29

Weight (kDa)

10.29

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 2 cut(s) 52, 57
AclWI GGATC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 97, 183
AluBI AGCT 4 cut(s) 104, 112, 169, 186
AluI AGCT 4 cut(s) 104, 112, 169, 186
AlwI GGATC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 16, 76
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BbvI GCAGC 1 cut(s) 91
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 2 cut(s) 52, 57
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 29
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 24, 30, 90
BspCNI CTCAG 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 2 cut(s) 52, 57
BspPI GGATC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 166
BssMI GATC 3 cut(s) 24, 30, 90
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 54, 167
BstDEI CTNAG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 64
BstKTI GATC 3 cut(s) 27, 33, 93
BstMBI GATC 3 cut(s) 24, 30, 90
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstPI GGTNACC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BveI ACCTGC 2 cut(s) 52, 57
Cac8I GCNNGC 2 cut(s) 54, 167
CviJI RGCY 4 cut(s) 104, 112, 169, 186
CviKI_1 RGCY 4 cut(s) 104, 112, 169, 186
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 26, 32, 92
DpnII GATC 3 cut(s) 24, 30, 90
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
FaiI YATR 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 128
HphI GGTGA 2 cut(s) 16, 76
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 3 cut(s) 28, 34, 97
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 132
Kzo9I GATC 3 cut(s) 24, 30, 90
LpnPI CCDG 4 cut(s) 47, 62, 66, 147
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 26, 32, 92
MboI GATC 3 cut(s) 24, 30, 90
MboII GAAGA 4 cut(s) 34, 49, 85, 96
MflI RGATCY 1 cut(s) 90
MnlI CCTC 4 cut(s) 9, 72, 80, 127
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 3 cut(s) 24, 30, 90
NmuCI GTSAC 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 90
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 24, 30, 90
SetI ASST 8 cut(s) 51, 66, 71, 106, 114, 138, 171, 188
SfcI CTRYAG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
SspMI CTAG 1 cut(s) 201
TfiI GAWTC 1 cut(s) 128
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 64
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.