Rmu_sc0008851.1_g000013
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008851.1
OG0008928
Physical Location & Seq
Forward (+)
61727 .. 64192
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008851.1_g000013.1.cds

Sequence Viewer

Length: 555 bp
atgtcgaagccgacgagggagaagataaagatcaggaagatcgacaacttgccggcgaggcaggtgacgttttcgaagaggagaagagggcttttgaagaaagctggagagctgtcggttctctgtgattgtgagtatgctgtcatcatcttctctgctactggaaagctcttcgagtcctccagctccagttctgctaggattgggagagtgccgccttcgagcttggcctctctctctctctctctctctctctctcctgcatggagtacacatacgacgtcttctttggagttgtccaaatccaatctagctactatcgggatttatctcttgcagacgttttctgcgccatcatggcttgcaagtgtggaggcctatgttttatcggatcgtttgcctcttgatgtgcaaccttgtgtagccccattggcagtgttgtgttgtggaggctcgtctaggcctaggctagcacgactcaaaggtagtggtgtgatgacgatggcgttggcagatctgggtagatcttggtgggcgcggtgggagacttggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

184

Amino Acids

20.03

Weight (kDa)

9.98

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
AatII GACGTC 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 52
AccII CGCG 1 cut(s) 538
AciI CCGC 2 cut(s) 215, 538
AclWI GGATC 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 6 cut(s) 104, 112, 169, 186, 225, 314
AluI AGCT 6 cut(s) 104, 112, 169, 186, 225, 314
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 399
AoxI GGCC 3 cut(s) 228, 375, 461
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AspA2I CCTAGG 1 cut(s) 464
AspLEI GCGC 2 cut(s) 352, 538
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 469
AvrII CCTAGG 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 276
BccI CCATC 2 cut(s) 361, 496
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 5 cut(s) 198, 311, 459, 465, 470
BfuAI ACCTGC 1 cut(s) 52
BglI GCCNNNNNGGC 3 cut(s) 58, 358, 431
BglII AGATCT 2 cut(s) 514, 524
BisI GCNGC 1 cut(s) 215
BlnI CCTAGG 1 cut(s) 464
BlsI GCNGC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 3 cut(s) 126, 166, 172
Bpu14I TTCGAA 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 464
BsaXI ACNNNNNCTCC 1 cut(s) 536
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 166, 189
Bse8I GATNNNNATC 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 464
BseJI GATNNNNATC 1 cut(s) 29
BseNI ACTGG 2 cut(s) 166, 189
BseRI GAGGAG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 3 cut(s) 230, 377, 463
BsiSI CCGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 3 cut(s) 230, 377, 463
Bsp119I TTCGAA 1 cut(s) 74
Bsp143I GATC 5 cut(s) 30, 39, 391, 514, 524
BspACI CCGC 2 cut(s) 215, 538
BspANI GGCC 3 cut(s) 230, 377, 463
BspFNI CGCG 1 cut(s) 538
BspMI ACCTGC 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 399
BspQI GCTCTTC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 2 cut(s) 166, 189
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 5 cut(s) 30, 39, 391, 514, 524
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 464
Bst6I CTCTTC 3 cut(s) 71, 79, 176
BstACI GRCGYC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 54, 363, 471
BstFNI CGCG 1 cut(s) 538
BstHHI GCGC 2 cut(s) 352, 538
BstKTI GATC 5 cut(s) 33, 42, 394, 517, 527
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 5 cut(s) 30, 39, 391, 514, 524
BstMWI GCNNNNNNNGC 3 cut(s) 58, 358, 431
BstUI CGCG 1 cut(s) 538
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 514, 524
BstYI RGATCY 2 cut(s) 514, 524
BsuRI GGCC 3 cut(s) 230, 377, 463
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 54, 363, 471
CfoI GCGC 2 cut(s) 352, 538
Cfr10I RCCGGY 1 cut(s) 52
Csp6I GTAC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 2 cut(s) 264, 357
CviQI GTAC 1 cut(s) 270
DpnI GATC 5 cut(s) 32, 41, 393, 516, 526
DpnII GATC 5 cut(s) 30, 39, 391, 514, 524
Eam1104I CTCTTC 3 cut(s) 71, 79, 176
EarI CTCTTC 3 cut(s) 71, 79, 176
Eco130I CCWWGG 1 cut(s) 464
Eco147I AGGCCT 2 cut(s) 377, 463
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 2 cut(s) 267, 360
FaiI YATR 5 cut(s) 138, 265, 276, 358, 381
FatI CATG 2 cut(s) 263, 356
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 5 cut(s) 198, 311, 459, 465, 470
GlaI GCGC 2 cut(s) 351, 537
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 3 cut(s) 126, 166, 172
HaeIII GGCC 3 cut(s) 230, 377, 463
HapII CCGG 1 cut(s) 53
HhaI GCGC 2 cut(s) 352, 538
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 2 cut(s) 267, 360
Hin6I GCGC 2 cut(s) 350, 536
HinP1I GCGC 2 cut(s) 350, 536
HinfI GANTC 2 cut(s) 176, 477
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 3 cut(s) 34, 322, 404
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 2 cut(s) 16, 283
HpyAV CCTTC 1 cut(s) 228
HpyCH4IV ACGT 3 cut(s) 68, 281, 341
HpyCH4V TGCA 4 cut(s) 263, 337, 365, 412
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 358, 431
HpySE526I ACGT 3 cut(s) 68, 281, 341
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 2 cut(s) 267, 360
HspAI GCGC 2 cut(s) 350, 536
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 5 cut(s) 30, 39, 391, 514, 524
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 9 cut(s) 19, 47, 66, 90, 147, 196, 202, 273, 503
MaeI CTAG 5 cut(s) 198, 311, 459, 465, 470
MaeII ACGT 3 cut(s) 68, 281, 341
MaeIII GTNAC 1 cut(s) 64
MalI GATC 5 cut(s) 32, 41, 393, 516, 526
MboI GATC 5 cut(s) 30, 39, 391, 514, 524
MboII GAAGA 8 cut(s) 34, 49, 88, 96, 109, 142, 163, 276
MflI RGATCY 2 cut(s) 514, 524
MlyI GAGTC 2 cut(s) 185, 471
MnlI CCTC 9 cut(s) 9, 51, 72, 80, 190, 241, 367, 411, 443
MroNI GCCGGC 1 cut(s) 52
MspI CCGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 3 cut(s) 58, 358, 431
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 5 cut(s) 30, 39, 391, 514, 524
NgoMIV GCCGGC 1 cut(s) 52
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 2 cut(s) 267, 360
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 52
PceI AGGCCT 2 cut(s) 377, 463
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 2 cut(s) 184, 471
PpsI GAGTC 2 cut(s) 184, 471
PsuI RGATCY 2 cut(s) 514, 524
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 176
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 5 cut(s) 30, 39, 391, 514, 524
SchI GAGTC 2 cut(s) 185, 471
SfuI TTCGAA 1 cut(s) 74
SseBI AGGCCT 2 cut(s) 377, 463
SsiI CCGC 2 cut(s) 215, 538
SspMI CTAG 5 cut(s) 198, 311, 459, 465, 470
StuI AGGCCT 2 cut(s) 377, 463
StyI CCWWGG 1 cut(s) 464
TaiI ACGT 3 cut(s) 71, 284, 344
TaqI TCGA 5 cut(s) 5, 42, 74, 174, 221
TatI WGTACW 1 cut(s) 269
TauI GCSGC 1 cut(s) 217
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspRI CASTG 1 cut(s) 441
XmaJI CCTAGG 1 cut(s) 464
XspI CTAG 5 cut(s) 198, 311, 459, 465, 470
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.