transcription regulatory region sequence-specific DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g11353 FvH4_4g19210 FvH4_5g29232 |
| malus_domestica | MD05G1049100.v1.1 MD05G1049400.v1.1 MD06G1163200.v1.1 MD09G1074000.v1.1 MD09G1075200.v1.1 MD10G1055900.v1.1 MD10G1306300.v1.1 |
| prunus_persica | Prupe.1G531300_v2.0.a1 Prupe.1G531500_v2.0.a1 Prupe.1G538700_v2.0.a1 |
| pyrus_communis | pycom08g16930 pycom09g00120 pycom15g27670 |
| rosa_chinensis | RchiOBHm_Chr6g0270001 RchiOBHm_Chr7g0233561 |
| rosa_multiflora | Rmu_sc0002409.1_g000001 Rmu_sc0008851.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00227180 Rroxscaffold_5G00351090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 168 |
| AcuI | CTGAAG | 1 cut(s) | 60 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AluBI | AGCT | 6 cut(s) | 11, 19, 44, 76, 93, 109 |
| AluI | AGCT | 6 cut(s) | 11, 19, 44, 76, 93, 109 |
| ApeKI | GCWGC | 2 cut(s) | 44, 232 |
| BbvI | GCAGC | 2 cut(s) | 31, 219 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BfaI | CTAG | 2 cut(s) | 227, 244 |
| BisI | GCNGC | 2 cut(s) | 45, 233 |
| BlsI | GCNGC | 2 cut(s) | 46, 234 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 98, 130 |
| BpmI | CTGGAG | 2 cut(s) | 33, 79 |
| BpuEI | CTTGAG | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 1 cut(s) | 122 |
| Bse1I | ACTGG | 1 cut(s) | 149 |
| Bse3DI | GCAATG | 1 cut(s) | 116 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseDI | CCNNGG | 1 cut(s) | 122 |
| BseGI | GGATG | 1 cut(s) | 159 |
| BseMI | GCAATG | 1 cut(s) | 116 |
| BseNI | ACTGG | 1 cut(s) | 149 |
| BseRI | GAGGAG | 1 cut(s) | 230 |
| BseXI | GCAGC | 2 cut(s) | 31, 219 |
| BslFI | GGGAC | 1 cut(s) | 167 |
| BsmFI | GGGAC | 1 cut(s) | 167 |
| BsmI | GAATGC | 1 cut(s) | 239 |
| Bsp143I | GATC | 1 cut(s) | 102 |
| BsrDI | GCAATG | 1 cut(s) | 116 |
| BsrI | ACTGG | 1 cut(s) | 149 |
| BssECI | CCNNGG | 1 cut(s) | 122 |
| BssMI | GATC | 1 cut(s) | 102 |
| BssT1I | CCWWGG | 1 cut(s) | 122 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst6I | CTCTTC | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 159 |
| BstKTI | GATC | 1 cut(s) | 105 |
| BstMBI | GATC | 1 cut(s) | 102 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstV1I | GCAGC | 2 cut(s) | 31, 219 |
| BtsCI | GGATG | 1 cut(s) | 159 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| CviAII | CATG | 2 cut(s) | 197, 206 |
| CviJI | RGCY | 6 cut(s) | 11, 19, 44, 76, 93, 109 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 19, 44, 76, 93, 109 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DpnI | GATC | 1 cut(s) | 104 |
| DpnII | GATC | 1 cut(s) | 102 |
| Eam1104I | CTCTTC | 1 cut(s) | 143 |
| EarI | CTCTTC | 1 cut(s) | 143 |
| Eco130I | CCWWGG | 1 cut(s) | 122 |
| Eco57I | CTGAAG | 1 cut(s) | 60 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| EcoT14I | CCWWGG | 1 cut(s) | 122 |
| ErhI | CCWWGG | 1 cut(s) | 122 |
| FaeI | CATG | 2 cut(s) | 200, 209 |
| FaiI | YATR | 2 cut(s) | 198, 207 |
| FaqI | GGGAC | 1 cut(s) | 167 |
| FatI | CATG | 2 cut(s) | 196, 205 |
| FblI | GTMKAC | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 2 cut(s) | 45, 233 |
| FokI | GGATG | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 2 cut(s) | 45, 233 |
| FspBI | CTAG | 2 cut(s) | 227, 244 |
| GluI | GCNGC | 2 cut(s) | 45, 233 |
| GsuI | CTGGAG | 2 cut(s) | 33, 79 |
| Hin1II | CATG | 2 cut(s) | 200, 209 |
| HincII | GTYRAC | 2 cut(s) | 129, 169 |
| HindII | GTYRAC | 2 cut(s) | 129, 169 |
| HinfI | GANTC | 3 cut(s) | 25, 35, 223 |
| Hpy166II | GTNNAC | 2 cut(s) | 129, 169 |
| Hpy188I | TCNGA | 1 cut(s) | 40 |
| Hpy188III | TCNNGA | 1 cut(s) | 96 |
| Hpy8I | GTNNAC | 2 cut(s) | 129, 169 |
| HpyCH4V | TGCA | 1 cut(s) | 235 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| Hsp92II | CATG | 2 cut(s) | 200, 209 |
| Kzo9I | GATC | 1 cut(s) | 102 |
| LmnI | GCTCC | 2 cut(s) | 81, 98 |
| LpnPI | CCDG | 4 cut(s) | 109, 130, 149, 176 |
| Lsp1109I | GCAGC | 2 cut(s) | 31, 219 |
| MaeI | CTAG | 2 cut(s) | 227, 244 |
| MalI | GATC | 1 cut(s) | 104 |
| MboI | GATC | 1 cut(s) | 102 |
| MboII | GAAGA | 2 cut(s) | 16, 160 |
| MnlI | CCTC | 4 cut(s) | 124, 144, 208, 213 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| Mva1269I | GAATGC | 1 cut(s) | 239 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| NdeII | GATC | 1 cut(s) | 102 |
| NlaIII | CATG | 2 cut(s) | 200, 209 |
| PctI | GAATGC | 1 cut(s) | 239 |
| PfeI | GAWTC | 3 cut(s) | 25, 35, 223 |
| PkrI | GCNGC | 2 cut(s) | 46, 234 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| SalI | GTCGAC | 1 cut(s) | 167 |
| SatI | GCNGC | 2 cut(s) | 45, 233 |
| Sau3AI | GATC | 1 cut(s) | 102 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SetI | ASST | 8 cut(s) | 13, 21, 46, 78, 95, 111, 116, 168 |
| SmlI | CTYRAG | 1 cut(s) | 88 |
| SmoI | CTYRAG | 1 cut(s) | 88 |
| SspMI | CTAG | 2 cut(s) | 227, 244 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| StyI | CCWWGG | 1 cut(s) | 122 |
| TaqI | TCGA | 3 cut(s) | 23, 105, 168 |
| TfiI | GAWTC | 3 cut(s) | 25, 35, 223 |
| TseI | GCWGC | 2 cut(s) | 44, 232 |
| TspDTI | ATGAA | 3 cut(s) | 17, 152, 222 |
| XmiI | GTMKAC | 1 cut(s) | 168 |
| XspI | CTAG | 2 cut(s) | 227, 244 |