Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008928

Physical Location & Seq

Genomic Coordinates Forward (+)

11250091 .. 11256669

Gene Structure 6579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGAAGGGGAAAGATTGTGATAAGGAGGATTGACAATTCAACCAGCAGGCAGGTGACGTTTTCGAAGCGGAGGAATGGATTGTTGAAGAAGGCCAAAGAACTGGCGATCCTGTGCGATGCTGAGGTCGGAGTCATGATCTTCTCCAGCACCAACAAGCTCTACGAATTCGCAAGCACCAGAACAACTAAACCAGTCCTAGAGCCACTACAAAACCCTAATAGATCTAACTCCTCCAACTGTTGTCATCGGATCCACGGTGTCTCGGCCACCACCTTCATAGCTACCTCCACCCTCGCTTCCATAGCTACCACGGCCATGGCTGTAGCCATTGTCTCCACCCTCATGAAAGCCACTATCGCCATAACCTCCACCGCCACCGCCTCCCCCTTTACGAGGGCCACTACCACCACCACAACCGCTTCCGCCGGACTAAGCCTCATTGACGGTGATGCTATGACCATCAACATCCTAGCCATTCATGCCTTTGATCATGTCCCTCATGGCCTTCTCGTTGCTAAAGGTGACGAATCCAAATCCCTGGACCTTCGGTCTCACGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

188

Amino Acids

20.07

Weight (kDa)

9.95

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.8e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11353 FvH4_4g19210 FvH4_5g29232
malus_domestica	MD05G1049100.v1.1 MD05G1049400.v1.1 MD06G1163200.v1.1 MD09G1074000.v1.1 MD09G1075200.v1.1 MD10G1055900.v1.1 MD10G1306300.v1.1
prunus_persica	Prupe.1G531300_v2.0.a1 Prupe.1G531500_v2.0.a1 Prupe.1G538700_v2.0.a1
pyrus_communis	pycom08g16930 pycom09g00120 pycom15g27670
rosa_chinensis	RchiOBHm_Chr6g0270001 RchiOBHm_Chr7g0233561
rosa_multiflora	Rmu_sc0002409.1_g000001 Rmu_sc0008851.1_g000013
rosa_roxburghii	Rroxscaffold_3G00227180 Rroxscaffold_5G00351090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	5 cut(s)	70, 375, 381, 420, 426
AclWI	GGATC	3 cut(s)	103, 247, 260
AcoI	YGGCCR	2 cut(s)	267, 315
AcsI	RAATTY	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	42, 88
AhdI	GACNNNNNGTC	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	540
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	3 cut(s)	160, 284, 308
AluI	AGCT	3 cut(s)	160, 284, 308
Alw26I	GTCTC	3 cut(s)	268, 340, 558
AlwI	GGATC	3 cut(s)	103, 247, 260
AoxI	GGCC	5 cut(s)	93, 267, 315, 399, 505
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	399, 544
AsuHPI	GGTGA	3 cut(s)	67, 461, 536
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	542
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	3 cut(s)	268, 340, 558
BfaI	CTAG	2 cut(s)	200, 473
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	544
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmgT120I	GGNCC	2 cut(s)	399, 544
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	109, 442
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	4 cut(s)	256, 312, 318, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	108, 194
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	4 cut(s)	256, 312, 318, 540
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	108, 194
BseRI	GAGGAG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	5 cut(s)	95, 269, 317, 401, 507
BsiEI	CGRYCG	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	3 cut(s)	268, 340, 558
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	5 cut(s)	95, 269, 317, 401, 507
Bso31I	GGTCTC	1 cut(s)	558
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	5 cut(s)	70, 375, 381, 420, 426
BspANI	GGCC	5 cut(s)	95, 269, 317, 401, 507
BspCNI	CTCAG	1 cut(s)	115
BspHI	TCATGA	2 cut(s)	135, 345
BspLI	GGNNCC	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	103, 247, 260
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	108, 194
BssECI	CCNNGG	4 cut(s)	256, 312, 318, 540
BssMI	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	3 cut(s)	242, 260, 449
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	50, 175
BstDEI	CTNAG	2 cut(s)	123, 434
BstDSI	CCRYGG	3 cut(s)	256, 312, 318
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	6 cut(s)	111, 141, 227, 255, 493, 562
BstMAI	GTCTC	3 cut(s)	268, 340, 558
BstMBI	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 314, 359, 482
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	224, 252
BstXI	CCANNNNNNTGG	3 cut(s)	103, 319, 541
BstYI	RGATCY	2 cut(s)	224, 252
BsuRI	GGCC	5 cut(s)	95, 269, 317, 401, 507
BtgI	CCRYGG	3 cut(s)	256, 312, 318
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	50, 175
CciI	TCATGA	2 cut(s)	135, 345
Cfr13I	GGNCC	2 cut(s)	399, 544
CviAII	CATG	6 cut(s)	136, 319, 346, 482, 494, 503
DdeI	CTNAG	2 cut(s)	123, 434
DpnI	GATC	6 cut(s)	110, 140, 226, 254, 492, 561
DpnII	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
DriI	GACNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	267, 315
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EciI	GGCGGA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	6 cut(s)	139, 322, 349, 485, 497, 506
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	6 cut(s)	135, 318, 345, 481, 493, 502
FbaI	TGATCA	1 cut(s)	490
FokI	GGATG	1 cut(s)	455
FspBI	CTAG	2 cut(s)	200, 473
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	5 cut(s)	95, 269, 317, 401, 507
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	6 cut(s)	139, 322, 349, 485, 497, 506
HinfI	GANTC	2 cut(s)	132, 530
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	3 cut(s)	67, 461, 536
Hpy188I	TCNGA	2 cut(s)	131, 252
Hpy188III	TCNNGA	3 cut(s)	136, 346, 557
HpyAV	CCTTC	4 cut(s)	85, 286, 518, 557
HpyCH4III	ACNGT	3 cut(s)	242, 260, 449
HpyCH4IV	ACGT	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 314, 359, 482
HpyF3I	CTNAG	2 cut(s)	123, 434
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	6 cut(s)	139, 322, 349, 485, 497, 506
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
LweI	GCATC	2 cut(s)	109, 442
MaeI	CTAG	2 cut(s)	200, 473
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	55, 524
MalI	GATC	6 cut(s)	110, 140, 226, 254, 492, 561
MboI	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
MboII	GAAGA	2 cut(s)	100, 133
MflI	RGATCY	2 cut(s)	224, 252
MluCI	AATT	2 cut(s)	37, 167
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	2 cut(s)	109, 261
MslI	CAYNNNNRTG	2 cut(s)	317, 344
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	4 cut(s)	305, 314, 359, 482
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
NlaIII	CATG	6 cut(s)	139, 322, 349, 485, 497, 506
NlaIV	GGNNCC	1 cut(s)	254
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	55, 524
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	2 cut(s)	135, 345
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	530
Ple19I	CGATCG	1 cut(s)	562
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	399, 544
PsuI	RGATCY	2 cut(s)	224, 252
PvuI	CGATCG	1 cut(s)	562
RseI	CAYNNNNRTG	2 cut(s)	317, 344
Sau3AI	GATC	6 cut(s)	108, 138, 224, 252, 490, 559
Sau96I	GGNCC	2 cut(s)	399, 544
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	542
SfaNI	GCATC	2 cut(s)	109, 442
SfcI	CTRYAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	317, 344
Sse9I	AATT	2 cut(s)	37, 167
SsiI	CCGC	5 cut(s)	70, 375, 381, 420, 426
SspMI	CTAG	2 cut(s)	200, 473
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	242, 260, 449
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	65
TaqII	GACCGA	1 cut(s)	540
TasI	AATT	2 cut(s)	37, 167
TfiI	GAWTC	1 cut(s)	530
TseFI	GTSAC	2 cut(s)	55, 524
Tsp45I	GTSAC	2 cut(s)	55, 524
TspDTI	ATGAA	3 cut(s)	268, 362, 470
VpaK11BI	GGWCC	1 cut(s)	544
XagI	CCTNNNNNAGG	1 cut(s)	394
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	2 cut(s)	200, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.