transcription regulatory region sequence-specific DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g11353 FvH4_4g19210 FvH4_5g29232 |
| malus_domestica | MD05G1049100.v1.1 MD05G1049400.v1.1 MD06G1163200.v1.1 MD09G1074000.v1.1 MD09G1075200.v1.1 MD10G1055900.v1.1 MD10G1306300.v1.1 |
| prunus_persica | Prupe.1G531300_v2.0.a1 Prupe.1G531500_v2.0.a1 Prupe.1G538700_v2.0.a1 |
| pyrus_communis | pycom08g16930 pycom09g00120 pycom15g27670 |
| rosa_chinensis | RchiOBHm_Chr6g0270001 RchiOBHm_Chr7g0233561 |
| rosa_multiflora | Rmu_sc0002409.1_g000001 Rmu_sc0008851.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00227180 Rroxscaffold_5G00351090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 52 |
| Acc36I | ACCTGC | 1 cut(s) | 52 |
| AclWI | GGATC | 1 cut(s) | 98 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 251, 252 |
| AgsI | TTSAA | 3 cut(s) | 97, 183, 200 |
| AluBI | AGCT | 4 cut(s) | 104, 112, 169, 186 |
| AluI | AGCT | 4 cut(s) | 104, 112, 169, 186 |
| AlwI | GGATC | 1 cut(s) | 98 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 204 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 76 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 29, 61 |
| BbsI | GAAGAC | 2 cut(s) | 14, 207 |
| BbvCI | CCTCAGC | 1 cut(s) | 105 |
| BfuAI | ACCTGC | 1 cut(s) | 52 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 58 |
| BmiI | GGNNCC | 1 cut(s) | 270 |
| BpiI | GAAGAC | 2 cut(s) | 14, 207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 105 |
| BpuEI | CTTGAG | 2 cut(s) | 172, 217 |
| BsaBI | GATNNNNATC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 251, 252 |
| Bse1I | ACTGG | 1 cut(s) | 166 |
| Bse3DI | GCAATG | 1 cut(s) | 263 |
| Bse8I | GATNNNNATC | 1 cut(s) | 29 |
| BseJI | GATNNNNATC | 1 cut(s) | 29 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 251, 252 |
| BseMI | GCAATG | 1 cut(s) | 263 |
| BseMII | CTCAG | 2 cut(s) | 96, 123 |
| BseNI | ACTGG | 1 cut(s) | 166 |
| BseRI | GAGGAG | 3 cut(s) | 94, 97, 122 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 251, 252 |
| Bsp143I | GATC | 3 cut(s) | 24, 30, 90 |
| BspCNI | CTCAG | 2 cut(s) | 97, 124 |
| BspLI | GGNNCC | 1 cut(s) | 270 |
| BspMI | ACCTGC | 1 cut(s) | 52 |
| BspPI | GGATC | 1 cut(s) | 98 |
| BsrDI | GCAATG | 1 cut(s) | 263 |
| BsrI | ACTGG | 1 cut(s) | 166 |
| BssMI | GATC | 3 cut(s) | 24, 30, 90 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 167 |
| BstDEI | CTNAG | 2 cut(s) | 105, 132 |
| BstEII | GGTNACC | 1 cut(s) | 64 |
| BstKTI | GATC | 3 cut(s) | 27, 33, 93 |
| BstMBI | GATC | 3 cut(s) | 24, 30, 90 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 58, 192 |
| BstPI | GGTNACC | 1 cut(s) | 64 |
| BstV2I | GAAGAC | 2 cut(s) | 14, 207 |
| BstX2I | RGATCY | 1 cut(s) | 90 |
| BstYI | RGATCY | 1 cut(s) | 90 |
| BveI | ACCTGC | 1 cut(s) | 52 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 167 |
| CviAII | CATG | 2 cut(s) | 226, 273 |
| CviJI | RGCY | 6 cut(s) | 104, 112, 169, 186, 195, 271 |
| CviKI_1 | RGCY | 6 cut(s) | 104, 112, 169, 186, 195, 271 |
| DdeI | CTNAG | 2 cut(s) | 105, 132 |
| DpnI | GATC | 3 cut(s) | 26, 32, 92 |
| DpnII | GATC | 3 cut(s) | 24, 30, 90 |
| Eco91I | GGTNACC | 1 cut(s) | 64 |
| EcoO65I | GGTNACC | 1 cut(s) | 64 |
| FaeI | CATG | 2 cut(s) | 229, 276 |
| FaiI | YATR | 3 cut(s) | 219, 227, 274 |
| FatI | CATG | 2 cut(s) | 225, 272 |
| Hin1II | CATG | 2 cut(s) | 229, 276 |
| HindIII | AAGCTT | 1 cut(s) | 167 |
| HinfI | GANTC | 2 cut(s) | 128, 221 |
| HphI | GGTGA | 2 cut(s) | 16, 76 |
| Hpy188I | TCNGA | 1 cut(s) | 133 |
| Hpy188III | TCNNGA | 4 cut(s) | 28, 34, 97, 189 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 1 cut(s) | 56 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 58, 192 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 132 |
| Hsp92II | CATG | 2 cut(s) | 229, 276 |
| Kzo9I | GATC | 3 cut(s) | 24, 30, 90 |
| LmnI | GCTCC | 2 cut(s) | 109, 268 |
| LpnPI | CCDG | 4 cut(s) | 47, 66, 147, 197 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MalI | GATC | 3 cut(s) | 26, 32, 92 |
| MboI | GATC | 3 cut(s) | 24, 30, 90 |
| MboII | GAAGA | 6 cut(s) | 19, 31, 34, 49, 85, 212 |
| MflI | RGATCY | 1 cut(s) | 90 |
| MnlI | CCTC | 6 cut(s) | 9, 72, 75, 80, 100, 127 |
| MroXI | GAANNNNTTC | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 58, 192 |
| NdeII | GATC | 3 cut(s) | 24, 30, 90 |
| NlaIII | CATG | 2 cut(s) | 229, 276 |
| NlaIV | GGNNCC | 1 cut(s) | 270 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| PaqCI | CACCTGC | 1 cut(s) | 52 |
| PdmI | GAANNNNTTC | 1 cut(s) | 204 |
| PfeI | GAWTC | 2 cut(s) | 128, 221 |
| PspEI | GGTNACC | 1 cut(s) | 64 |
| PspN4I | GGNNCC | 1 cut(s) | 270 |
| PsuI | RGATCY | 1 cut(s) | 90 |
| Sau3AI | GATC | 3 cut(s) | 24, 30, 90 |
| SetI | ASST | 7 cut(s) | 66, 71, 106, 114, 138, 171, 188 |
| SmlI | CTYRAG | 2 cut(s) | 187, 232 |
| SmoI | CTYRAG | 2 cut(s) | 187, 232 |
| TfiI | GAWTC | 2 cut(s) | 128, 221 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 204 |