Rroxscaffold_5G00351090
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008928
Physical Location & Seq
Forward (+)
26215908 .. 26216390
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351090.1

Sequence Viewer

Length: 483 bp
ATGAGGCCAAGTCTTTTTGTTCTTCAAGTTGGCCATTGCGAACTGAAACTGGAACTCCATCGCATTCTGCCCGACGTTGACTTCTACTTCCACCTCAACTCCGGCAGATTGAAGCTCCACAGGAAGCTTAGTGAGCGAATCTGCAGTTGCAGCTTGTGTTACTATCGTATATGGATGATCAAGAAGGATTTGGAAGCCAGGAGGTGCAGGACAATGGCCACTGCTACCAGAGATGCTGTTGAAGTGGGTGGAGGTGACCAGAAGATAAAGATCAGGAAGATCGACGACTTGCCGGTGAAGCAGGTGACGTTTTTGAAGAGGAGAAGAGGGCTTTTGAAGAAAGCTGGAGAGCTTTCGTTTCTCTGTGATTGTGAGTATGCTGTCACCATCTTCTCTGCTACTGGAAAGCTCTTCGAGTCCTCCAGCTCCAGATGTGGGATGAACTTGGTGGATGCCAGATATCTACATGGAAGACCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

160

Amino Acids

18.47

Weight (kDa)

9.64

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 94 - 139 3.9e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 292
AcoI YGGCCR 2 cut(s) 31, 216
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 5 cut(s) 26, 112, 242, 316, 337
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 7 cut(s) 115, 127, 153, 344, 352, 409, 426
AluI AGCT 7 cut(s) 115, 127, 153, 344, 352, 409, 426
AoxI GGCC 3 cut(s) 5, 31, 216
ApeKI GCWGC 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 266, 307, 316, 376
BalI TGGCCA 2 cut(s) 33, 218
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 66, 395
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 223, 442
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 3 cut(s) 366, 406, 412
BsaBI GATNNNNATC 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 54, 406
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 269
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 3 cut(s) 180, 444, 457
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 54, 406
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 3 cut(s) 7, 33, 218
BsiSI CCGG 2 cut(s) 102, 293
BslI CCNNNNNNNGG 1 cut(s) 435
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 3 cut(s) 7, 33, 218
Bsp143I GATC 3 cut(s) 177, 270, 279
BspANI GGCC 3 cut(s) 7, 33, 218
BspMAI CTGCAG 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 2 cut(s) 54, 406
BssAI RCCGGY 1 cut(s) 292
BssMI GATC 3 cut(s) 177, 270, 279
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 3 cut(s) 311, 319, 416
BstDEI CTNAG 1 cut(s) 128
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 3 cut(s) 180, 444, 457
BstKTI GATC 3 cut(s) 180, 273, 282
BstMBI GATC 3 cut(s) 177, 270, 279
BstMWI GCNNNNNNNGC 3 cut(s) 133, 150, 298
BstNI CCWGG 1 cut(s) 199
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 478
BsuRI GGCC 3 cut(s) 7, 33, 218
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 180, 444, 457
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 292
CviAII CATG 1 cut(s) 467
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 179, 272, 281
DpnII GATC 3 cut(s) 177, 270, 279
EaeI YGGCCR 2 cut(s) 31, 216
Eam1104I CTCTTC 3 cut(s) 311, 319, 416
EarI CTCTTC 3 cut(s) 311, 319, 416
Eco32I GATATC 1 cut(s) 461
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 461
FaeI CATG 1 cut(s) 470
FaiI YATR 4 cut(s) 170, 172, 378, 468
FatI CATG 1 cut(s) 466
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 3 cut(s) 187, 451, 464
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 3 cut(s) 366, 406, 412
HaeIII GGCC 3 cut(s) 7, 33, 218
HapII CCGG 2 cut(s) 102, 293
Hin1II CATG 1 cut(s) 470
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 138, 416
HpaII CCGG 2 cut(s) 102, 293
HphI GGTGA 4 cut(s) 266, 307, 316, 376
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 181, 274, 429
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 77, 287
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 2 cut(s) 75, 308
HpyCH4V TGCA 3 cut(s) 144, 150, 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 150, 298
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 2 cut(s) 75, 308
Hsp92II CATG 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 177, 270, 279
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 120, 431
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 2 cut(s) 223, 442
MaeII ACGT 2 cut(s) 75, 308
MaeIII GTNAC 4 cut(s) 158, 254, 304, 382
MalI GATC 3 cut(s) 179, 272, 281
MboI GATC 3 cut(s) 177, 270, 279
MboII GAAGA 9 cut(s) 14, 274, 289, 328, 336, 349, 382, 403, 483
MlsI TGGCCA 2 cut(s) 33, 218
MluNI TGGCCA 2 cut(s) 33, 218
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 6 cut(s) 104, 195, 245, 312, 320, 430
Mox20I TGGCCA 2 cut(s) 33, 218
MscI TGGCCA 2 cut(s) 33, 218
Msp20I TGGCCA 2 cut(s) 33, 218
MspI CCGG 2 cut(s) 102, 293
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 133, 150, 298
NdeII GATC 3 cut(s) 177, 270, 279
NlaIII CATG 1 cut(s) 470
NmuCI GTSAC 3 cut(s) 254, 304, 382
PaqCI CACCTGC 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 197
PstI CTGCAG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 416
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 177, 270, 279
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 199
SfaNI GCATC 2 cut(s) 223, 442
SfcI CTRYAG 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 2 cut(s) 78, 311
TaqI TCGA 2 cut(s) 282, 414
TfiI GAWTC 1 cut(s) 138
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 3 cut(s) 254, 304, 382
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 3 cut(s) 254, 304, 382
TspDTI ATGAA 1 cut(s) 455
TspRI CASTG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.