FvH4_5g29232
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008928
Physical Location & Seq
Forward (+)
20255148 .. 20255466
319 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29232.t1

Sequence Viewer

Length: 201 bp
ATGACAAAGCGGGCGAGGAATAAGATAAAGATCAAGAAGATTGACAACTTGCCGGTGAGGCAGGTGACGTTTCTGAAGAGGAGGAGAGGGCTTTTGAAGAAAGCTGGAGAGCTTTTGGTGCTCTGTGATTGTGAAAATTTTAAGGTGAAGACCCGGCCCAATGTTGGTTCTATCAGTCCGGTCTCGGTCCCGTCGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

11.11

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 45 2.7e-12 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 2 cut(s) 104, 112
AluI AGCT 2 cut(s) 104, 112
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 187
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 156, 187
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 67, 76, 157
AvaII GGWCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 123
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 156, 187
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 94, 97
BshFI GGCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 3 cut(s) 53, 154, 179
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssMI GATC 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 58, 118
BstSCI CCNGG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 157
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 156, 187
CviJI RGCY 4 cut(s) 91, 104, 112, 157
CviKI_1 RGCY 4 cut(s) 91, 104, 112, 157
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 95
FaqI GGGAC 1 cut(s) 173
FauI CCCGC 1 cut(s) 3
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 157
HapII CCGG 3 cut(s) 53, 154, 179
HpaII CCGG 3 cut(s) 53, 154, 179
HphI GGTGA 3 cut(s) 67, 76, 157
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 118
HpySE526I ACGT 1 cut(s) 68
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 47, 66, 90, 167, 192
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 49, 88, 109, 160
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 136
MnlI CCTC 5 cut(s) 9, 51, 72, 75, 80
MseI TTAA 1 cut(s) 141
MspI CCGG 3 cut(s) 53, 154, 179
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 58, 118
NciI CCSGG 1 cut(s) 154
NdeII GATC 1 cut(s) 30
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 156, 187
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 156, 187
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 123
SetI ASST 5 cut(s) 66, 71, 106, 114, 147
SinI GGWCC 1 cut(s) 187
Sse9I AATT 1 cut(s) 136
SsiI CCGC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 152
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 194
TaqII GACCGA 1 cut(s) 175
TasI AATT 1 cut(s) 136
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.