MD09G1075200.v1.1

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0008928
Physical Location & Seq
Reverse (-)
5260719 .. 5262365
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1075200.v1.1.491

Sequence Viewer

Length: 246 bp
ATGATGAGGGAGAAGATCAAGATCAGGAAGATCGATTACTTGCCGGCAAGGCAGGTGACCTTCTCAAAGAGGAGAAGAGTGGATTTGAAGAATGCTGGAGAGCTGTCCATTCTGTGTGAATCTGAAGCTGTTGTTATCATCTTTTCCCAAACTGGCAAGCTCTTTGATTTCTCAAGCTCCAGGTATGGATTTTATGGGAGGCGTCTAGAAGGTTCAACTTTGATCGTCGAAAGCACGGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

82

Amino Acids

9.3

Weight (kDa)

9.75

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 57 1.2e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 202
AgsI TTSAA 2 cut(s) 88, 216
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 4 cut(s) 103, 128, 160, 177
AluI AGCT 4 cut(s) 103, 128, 160, 177
AsuHPI GGTGA 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BciT130I CCWGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 230
BpmI CTGGAG 2 cut(s) 117, 163
BpuEI CTTGAG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 33
BseGI GGATG 1 cut(s) 245
BseJI GATNNNNATC 1 cut(s) 20
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 33
BsiSI CCGG 1 cut(s) 44
BsmI GAATGC 1 cut(s) 97
Bsp143I GATC 4 cut(s) 15, 21, 30, 222
BspDI ATCGAT 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 4 cut(s) 15, 21, 30, 222
BssNI GRCGYC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 45, 158
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 4 cut(s) 18, 24, 33, 225
BstMBI GATC 4 cut(s) 15, 21, 30, 222
BstMWI GCNNNNNNNGC 2 cut(s) 49, 240
BstNI CCWGG 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 33
BtsCI GGATG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 45, 158
Cfr10I RCCGGY 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 191
CviJI RGCY 4 cut(s) 103, 128, 160, 177
CviKI_1 RGCY 4 cut(s) 103, 128, 160, 177
DpnI GATC 4 cut(s) 17, 23, 32, 224
DpnII GATC 4 cut(s) 15, 21, 30, 222
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 179
FaiI YATR 2 cut(s) 186, 195
FspBI CTAG 1 cut(s) 206
GsuI CTGGAG 2 cut(s) 117, 163
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 202
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 19, 25, 206
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 70, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 240
Hsp92I GRCGYC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 4 cut(s) 15, 21, 30, 222
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 10, 38, 57, 81, 138, 166, 193
LweI GCATC 1 cut(s) 230
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 55
MalI GATC 4 cut(s) 17, 23, 32, 224
MboI GATC 4 cut(s) 15, 21, 30, 222
MboII GAAGA 4 cut(s) 25, 40, 87, 100
MnlI CCTC 2 cut(s) 63, 192
MroNI GCCGGC 1 cut(s) 43
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 49, 240
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 4 cut(s) 15, 21, 30, 222
NgoMIV GCCGGC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 43
PctI GAATGC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 179
Sau3AI GATC 4 cut(s) 15, 21, 30, 222
ScrFI CCNGG 1 cut(s) 181
SetI ASST 8 cut(s) 57, 62, 105, 130, 162, 179, 185, 214
SfaNI GCATC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 179
TaqI TCGA 2 cut(s) 33, 228
TfiI GAWTC 1 cut(s) 119
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 205
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.