FvH4_4g21750

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002239
Physical Location & Seq
Forward (+)
24761439 .. 24761811
373 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21750.t1

Sequence Viewer

Length: 234 bp
ATGGGAAAGACGTCCTTGTTCTCCTTCTGCAACATGTTCAAGGCTTGCTTTTCTGGTGGAAGCCGCGACGATACTTACTCTGATGATGGTGGTGGTTACAGAAGAAGAATATGTCCGAGTGATGAGGACAGAGGCGGTTGGACTGCTGAGCCTGGGATCGACCGCAAGGCCACTGCTTTCATTGCAAGGTTCTACGAGAGGCATGTTTCGGATGCTGAGTACCATGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

78

Amino Acids

8.64

Weight (kDa)

6.05

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccII CGCG 1 cut(s) 66
AciI CCGC 3 cut(s) 64, 135, 163
AclWI GGATC 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 151
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 168
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 153
BisI GCNGC 1 cut(s) 64
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 202
Bpu1102I GCTNAGC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 138, 207
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 163
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 3 cut(s) 64, 135, 163
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 139, 208
BspFNI CGCG 1 cut(s) 66
BspPI GGATC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 156
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 147, 216
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 2 cut(s) 37, 206
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 220
CviAII CATG 3 cut(s) 34, 203, 224
CviJI RGCY 4 cut(s) 44, 63, 151, 170
CviKI_1 RGCY 4 cut(s) 44, 63, 151, 170
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 147, 216
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 37, 206, 227
FaiI YATR 4 cut(s) 35, 112, 204, 225
FalI AAGNNNNNCTT 3 cut(s) 31, 32, 64
FatI CATG 3 cut(s) 33, 202, 223
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 3 cut(s) 37, 206, 227
Hpy188I TCNGA 3 cut(s) 82, 117, 211
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 30, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 147, 216
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 37, 206, 227
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 39, 138, 165
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 114, 117
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 3 cut(s) 118, 125, 192
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 156
NlaIII CATG 3 cut(s) 37, 206, 227
NspI RCATGY 2 cut(s) 37, 206
PciI ACATGT 1 cut(s) 33
PkrI GCNGC 1 cut(s) 65
PscI ACATGT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 153
SetI ASST 2 cut(s) 14, 191
SfaNI GCATC 1 cut(s) 202
SsiI CCGC 3 cut(s) 64, 135, 163
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 159
TauI GCSGC 1 cut(s) 66
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 1 cut(s) 178
XceI RCATGY 2 cut(s) 37, 206
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.